Version 0.6.1

setup.py: minimum python 3.9
Update requirements
2025-07-04 13:33:26 +02:00 · 2023-02-23 13:46:56 +03:00 · 2023-02-23 11:47:40 +03:00 · 2023-02-23 11:46:24 +03:00 · 2023-02-23 11:45:53 +03:00 · 2023-02-18 22:10:04 +03:00
10 changed files with 279 additions and 230 deletions
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@ -4,7 +4,7 @@ All notable changes to this project will be documented in this file.
 The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/),
 and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).

-## Unreleased
+## [0.6.1] - 2023-02-23
 ### Fixed
 - Missing region check should ignore subregion field, if it exists

@ -12,7 +12,11 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 - Use SPDX license data from SPDX themselves instead of spdx-license-list
 because it is deprecated and outdated
 - Require Python 3.9+
- Don't run `fix.separators()` on title fields
+- Don't run `fix.separators()` on title or abstract fields
+- Don't run whitespace or newline fixes on abstract fields
+- Ignore some common non-SPDX licenses
+- Ignore `__description` suffix in filenames meant for SAFBuilder when checking
+for uncommon file extensions

 ### Updated
 - Python dependencies
--- a/csv_metadata_quality/app.py
+++ b/csv_metadata_quality/app.py
@ -90,12 +90,14 @@ def run(argv):

            continue

-        # Fix: whitespace
-        df[column] = df[column].apply(fix.whitespace, field_name=column)
-
-        # Fix: newlines
        if args.unsafe_fixes:
-            df[column] = df[column].apply(fix.newlines, field_name=column)
+            match = re.match(r"^.*?abstract.*$", column)
+            if match is None:
+                # Fix: whitespace
+                df[column] = df[column].apply(fix.whitespace, field_name=column)
+
+                # Fix: newlines
+                df[column] = df[column].apply(fix.newlines, field_name=column)

        # Fix: missing space after comma. Only run on author and citation
        # fields for now, as this problem is mostly an issue in names.
@ -122,9 +124,9 @@ def run(argv):
        df[column] = df[column].apply(fix.unnecessary_unicode)

        # Fix: invalid and unnecessary multi-value separators. Skip the title
-        # field because sometimes "|" is used to indicate something like a
-        # subtitle.
-        match = re.match(r"^.*?title.*$", column)
+        # and abstract fields because "|" is used to indicate something like
+        # a subtitle.
+        match = re.match(r"^.*?(abstract|title).*$", column)
        if match is None:
            df[column] = df[column].apply(fix.separators, field_name=column)
            # Run whitespace fix again after fixing invalid separators
--- a/csv_metadata_quality/check.py
+++ b/csv_metadata_quality/check.py
@ -33,7 +33,6 @@ def issn(field):

    # Try to split multi-value field on "||" separator
    for value in field.split("||"):
-
        if not stdnum_issn.is_valid(value):
            print(f"{Fore.RED}Invalid ISSN: {Fore.RESET}{value}")

@ -56,7 +55,6 @@ def isbn(field):

    # Try to split multi-value field on "||" separator
    for value in field.split("||"):
-
        if not stdnum_isbn.is_valid(value):
            print(f"{Fore.RED}Invalid ISBN: {Fore.RESET}{value}")

@ -173,7 +171,6 @@ def language(field):

    # Try to split multi-value field on "||" separator
    for value in field.split("||"):
-
        # After splitting, check if language value is 2 or 3 characters so we
        # can check it against ISO 639-1 or ISO 639-3 accordingly.
        if len(value) == 2:
@ -286,6 +283,11 @@ def filename_extension(field):

    # Iterate over all values
    for value in values:
+        # Strip filename descriptions that are meant for SAF Bundler, for
+        # example: Annual_Report_2020.pdf__description:Report
+        if "__description" in value:
+            value = value.split("__")[0]
+
        # Assume filename extension does not match
        filename_extension_match = False

@ -312,8 +314,19 @@ def spdx_license_identifier(field):
    Prints the value if it is invalid.
    """

+    # List of common non-SPDX licenses to ignore
+    # See: https://ilri.github.io/cgspace-submission-guidelines/dcterms-license/dcterms-license.txt
+    ignore_licenses = {
+        "All rights reserved; no re-use allowed",
+        "All rights reserved; self-archive copy only",
+        "Copyrighted; Non-commercial educational use only",
+        "Copyrighted; Non-commercial use only",
+        "Copyrighted; all rights reserved",
+        "Other",
+    }
+
    # Skip fields with missing values
-    if pd.isna(field):
+    if pd.isna(field) or field in ignore_licenses:
        return

    spdx_licenses = load_spdx_licenses()
--- a/csv_metadata_quality/version.py
+++ b/csv_metadata_quality/version.py
@ -1,3 +1,3 @@
 # SPDX-License-Identifier: GPL-3.0-only

-VERSION = "0.6.0"
+VERSION = "0.6.1"
--- a/data/abstract-check.csv
+++ b/data/abstract-check.csv
@ -0,0 +1,17 @@
+id,dc.title,dcterms.abstract
+1,Normal item,This is an abstract
+2,Leading whitespace, This is an abstract
+3,Trailing whitespace,This is an abstract 
+4,Consecutive whitespace,This is  an abstract
+5,Newline,"This
+is an abstract"
+6,Newline with leading whitespace," This
+ is an abstract"
+7,Newline with trailing whitespace,"This 
+is an abstract "
+8,Newline with consecutive whitespace,"This
+is an  abstract"
+9,Multiple newlines,"This
+is
+an
+abstract"
--- a/poetry.lock
+++ b/poetry.lock
@ -65,23 +65,23 @@ test = ["nose (>=1.1.2)"]

 [[package]]
 name = "agate-sql"
-version = "0.5.8"
+version = "0.5.9"
 description = "agate-sql adds SQL read/write support to agate."
 category = "dev"
 optional = false
 python-versions = "*"
 files = [
-    {file = "agate-sql-0.5.8.tar.gz", hash = "sha256:581e062ae878cc087d3d0948670d46b16589df0790bf814524b0587a359f2ada"},
-    {file = "agate_sql-0.5.8-py2.py3-none-any.whl", hash = "sha256:aae3d1014c3396cb0c21a21f0e41b514128bc0479b9a1627d020611f470199c3"},
+    {file = "agate-sql-0.5.9.tar.gz", hash = "sha256:30b642a32a5b671161abef9e8ec36352f2e78a24ce849054edac6946d8b9ddc6"},
+    {file = "agate_sql-0.5.9-py2.py3-none-any.whl", hash = "sha256:de199dc5863775fe813b139ec7357f309aab8fd785ae8ee456ad07ee4e24a0e0"},
 ]

 [package.dependencies]
 agate = ">=1.5.0"
-sqlalchemy = ">=1.0.8"
+sqlalchemy = "<2"

 [package.extras]
 docs = ["Sphinx (>=1.2.2)", "sphinx-rtd-theme (>=0.1.6)"]
-test = ["crate", "geojson", "nose (>=1.1.2)"]
+test = ["crate", "geojson", "pytest", "pytest-cov"]

 [[package]]
 name = "appdirs"
@ -173,32 +173,46 @@ files = [

 [[package]]
 name = "black"
-version = "22.12.0"
+version = "23.1.0"
 description = "The uncompromising code formatter."
 category = "dev"
 optional = false
 python-versions = ">=3.7"
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 [package.dependencies]
 click = ">=8.0.0"
 mypy-extensions = ">=0.4.3"
+packaging = ">=22.0"
 pathspec = ">=0.9.0"
 platformdirs = ">=2"
-tomli = {version = ">=1.1.0", markers = "python_full_version < \"3.11.0a7\""}
+tomli = {version = ">=1.1.0", markers = "python_version < \"3.11\""}
 typing-extensions = {version = ">=3.10.0.0", markers = "python_version < \"3.10\""}

 [package.extras]
@ -381,14 +395,14 @@ resolved_reference = "ec553386f3d81097b492ad9f8aff5286cf58d66b"

 [[package]]
 name = "csvkit"
-version = "1.1.0"
+version = "1.1.1"
 description = "A suite of command-line tools for working with CSV, the king of tabular file formats."
 category = "dev"
 optional = false
 python-versions = "*"
 files = [
-    {file = "csvkit-1.1.0-py2.py3-none-any.whl", hash = "sha256:78e5e038505406fa24a976b2f2ba6935f1512e69903603d76f341ef096d4d0dc"},
-    {file = "csvkit-1.1.0.tar.gz", hash = "sha256:ad836b4ebf17674284ec94e2adeb9bea97367c9c7310187c2d8e2e3f1ded9c13"},
+    {file = "csvkit-1.1.1-py2.py3-none-any.whl", hash = "sha256:4ab7b4ced265fabecc6af5658166745b29d894d76cdb4bde51507b8a8fdbcfae"},
+    {file = "csvkit-1.1.1.tar.gz", hash = "sha256:beddb7b78f6b22adbed6ead5ad5de4bfb31dd2c55f3211b2a2b3b65529049223"},
 ]

 [package.dependencies]
@ -469,20 +483,20 @@ tests = ["asttokens", "littleutils", "pytest", "rich"]

 [[package]]
 name = "flake8"
-version = "5.0.4"
+version = "6.0.0"
 description = "the modular source code checker: pep8 pyflakes and co"
 category = "dev"
 optional = false
-python-versions = ">=3.6.1"
+python-versions = ">=3.8.1"
 files = [
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+    {file = "flake8-6.0.0.tar.gz", hash = "sha256:c61007e76655af75e6785a931f452915b371dc48f56efd765247c8fe68f2b181"},
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 [package.dependencies]
 mccabe = ">=0.7.0,<0.8.0"
-pycodestyle = ">=2.9.0,<2.10.0"
-pyflakes = ">=2.5.0,<2.6.0"
+pycodestyle = ">=2.10.0,<2.11.0"
+pyflakes = ">=3.0.0,<3.1.0"

 [[package]]
 name = "ftfy"
@ -501,77 +515,77 @@ wcwidth = ">=0.2.5"

 [[package]]
 name = "greenlet"
-version = "2.0.1"
+version = "2.0.2"
 description = "Lightweight in-process concurrent programming"
 category = "dev"
 optional = false
 python-versions = ">=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*"
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-test = ["faulthandler", "objgraph", "psutil"]
+test = ["objgraph", "psutil"]

 [[package]]
 name = "idna"
@ -599,14 +613,14 @@ files = [

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+version = "8.10.0"
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 pexpect = {version = ">4.3", markers = "sys_platform != \"win32\""}
 pickleshare = "*"
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 pygments = ">=2.4.0"
 stack-data = "*"
 traitlets = ">=5"

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 parallel = ["ipyparallel"]
 qtconsole = ["qtconsole"]
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+    {file = "numpy-1.24.2-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:889b2cc88b837d86eda1b17008ebeb679d82875022200c6e8e4ce6cf549b7acb"},
+    {file = "numpy-1.24.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:f64bb98ac59b3ea3bf74b02f13836eb2e24e48e0ab0145bbda646295769bd780"},
+    {file = "numpy-1.24.2-cp39-cp39-win32.whl", hash = "sha256:63e45511ee4d9d976637d11e6c9864eae50e12dc9598f531c035265991910468"},
+    {file = "numpy-1.24.2-cp39-cp39-win_amd64.whl", hash = "sha256:a77d3e1163a7770164404607b7ba3967fb49b24782a6ef85d9b5f54126cc39e5"},
+    {file = "numpy-1.24.2-pp38-pypy38_pp73-macosx_10_9_x86_64.whl", hash = "sha256:92011118955724465fb6853def593cf397b4a1367495e0b59a7e69d40c4eb71d"},
+    {file = "numpy-1.24.2-pp38-pypy38_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:f9006288bcf4895917d02583cf3411f98631275bc67cce355a7f39f8c14338fa"},
+    {file = "numpy-1.24.2-pp38-pypy38_pp73-win_amd64.whl", hash = "sha256:150947adbdfeceec4e5926d956a06865c1c690f2fd902efede4ca6fe2e657c3f"},
+    {file = "numpy-1.24.2.tar.gz", hash = "sha256:003a9f530e880cb2cd177cba1af7220b9aa42def9c4afc2a2fc3ee6be7eb2b22"},
 ]

 [[package]]
@ -845,14 +859,14 @@ files = [

 [[package]]
 name = "openpyxl"
-version = "3.0.10"
+version = "3.1.1"
 description = "A Python library to read/write Excel 2010 xlsx/xlsm files"
 category = "dev"
 optional = false
 python-versions = ">=3.6"
 files = [
-    {file = "openpyxl-3.0.10-py2.py3-none-any.whl", hash = "sha256:0ab6d25d01799f97a9464630abacbb34aafecdcaa0ef3cba6d6b3499867d0355"},
-    {file = "openpyxl-3.0.10.tar.gz", hash = "sha256:e47805627aebcf860edb4edf7987b1309c1b3632f3750538ed962bbcc3bd7449"},
+    {file = "openpyxl-3.1.1-py2.py3-none-any.whl", hash = "sha256:a0266e033e65f33ee697254b66116a5793c15fc92daf64711080000df4cfe0a8"},
+    {file = "openpyxl-3.1.1.tar.gz", hash = "sha256:f06d44e2c973781068bce5ecf860a09bcdb1c7f5ce1facd5e9aa82c92c93ae72"},
 ]

 [package.dependencies]
@ -949,14 +963,14 @@ testing = ["docopt", "pytest (<6.0.0)"]

 [[package]]
 name = "pathspec"
-version = "0.10.3"
+version = "0.11.0"
 description = "Utility library for gitignore style pattern matching of file paths."
 category = "dev"
 optional = false
 python-versions = ">=3.7"
 files = [
-    {file = "pathspec-0.10.3-py3-none-any.whl", hash = "sha256:3c95343af8b756205e2aba76e843ba9520a24dd84f68c22b9f93251507509dd6"},
-    {file = "pathspec-0.10.3.tar.gz", hash = "sha256:56200de4077d9d0791465aa9095a01d421861e405b5096955051deefd697d6f6"},
+    {file = "pathspec-0.11.0-py3-none-any.whl", hash = "sha256:3a66eb970cbac598f9e5ccb5b2cf58930cd8e3ed86d393d541eaf2d8b1705229"},
+    {file = "pathspec-0.11.0.tar.gz", hash = "sha256:64d338d4e0914e91c1792321e6907b5a593f1ab1851de7fc269557a21b30ebbc"},
 ]

 [[package]]
@ -988,19 +1002,19 @@ files = [

 [[package]]
 name = "platformdirs"
-version = "2.6.2"
+version = "3.0.0"
 description = "A small Python package for determining appropriate platform-specific dirs, e.g. a \"user data dir\"."
 category = "dev"
 optional = false
 python-versions = ">=3.7"
 files = [
-    {file = "platformdirs-2.6.2-py3-none-any.whl", hash = "sha256:83c8f6d04389165de7c9b6f0c682439697887bca0aa2f1c87ef1826be3584490"},
-    {file = "platformdirs-2.6.2.tar.gz", hash = "sha256:e1fea1fe471b9ff8332e229df3cb7de4f53eeea4998d3b6bfff542115e998bd2"},
+    {file = "platformdirs-3.0.0-py3-none-any.whl", hash = "sha256:b1d5eb14f221506f50d6604a561f4c5786d9e80355219694a1b244bcd96f4567"},
+    {file = "platformdirs-3.0.0.tar.gz", hash = "sha256:8a1228abb1ef82d788f74139988b137e78692984ec7b08eaa6c65f1723af28f9"},
 ]

 [package.extras]
-docs = ["furo (>=2022.12.7)", "proselint (>=0.13)", "sphinx (>=5.3)", "sphinx-autodoc-typehints (>=1.19.5)"]
-test = ["appdirs (==1.4.4)", "covdefaults (>=2.2.2)", "pytest (>=7.2)", "pytest-cov (>=4)", "pytest-mock (>=3.10)"]
+docs = ["furo (>=2022.12.7)", "proselint (>=0.13)", "sphinx (>=6.1.3)", "sphinx-autodoc-typehints (>=1.22,!=1.23.4)"]
+test = ["appdirs (==1.4.4)", "covdefaults (>=2.2.2)", "pytest (>=7.2.1)", "pytest-cov (>=4)", "pytest-mock (>=3.10)"]

 [[package]]
 name = "pluggy"
@ -1032,14 +1046,14 @@ files = [

 [[package]]
 name = "prompt-toolkit"
-version = "3.0.36"
+version = "3.0.37"
 description = "Library for building powerful interactive command lines in Python"
 category = "dev"
 optional = false
-python-versions = ">=3.6.2"
+python-versions = ">=3.7.0"
 files = [
-    {file = "prompt_toolkit-3.0.36-py3-none-any.whl", hash = "sha256:aa64ad242a462c5ff0363a7b9cfe696c20d55d9fc60c11fd8e632d064804d305"},
-    {file = "prompt_toolkit-3.0.36.tar.gz", hash = "sha256:3e163f254bef5a03b146397d7c1963bd3e2812f0964bb9a24e6ec761fd28db63"},
+    {file = "prompt_toolkit-3.0.37-py3-none-any.whl", hash = "sha256:6a2948ec427dfcc7c983027b1044b355db6aaa8be374f54ad2015471f7d81c5b"},
+    {file = "prompt_toolkit-3.0.37.tar.gz", hash = "sha256:d5d73d4b5eb1a92ba884a88962b157f49b71e06c4348b417dd622b25cdd3800b"},
 ]

 [package.dependencies]
@ -1074,14 +1088,14 @@ tests = ["pytest"]

 [[package]]
 name = "pycodestyle"
-version = "2.9.1"
+version = "2.10.0"
 description = "Python style guide checker"
 category = "dev"
 optional = false
 python-versions = ">=3.6"
 files = [
-    {file = "pycodestyle-2.9.1-py2.py3-none-any.whl", hash = "sha256:d1735fc58b418fd7c5f658d28d943854f8a849b01a5d0a1e6f3f3fdd0166804b"},
-    {file = "pycodestyle-2.9.1.tar.gz", hash = "sha256:2c9607871d58c76354b697b42f5d57e1ada7d261c261efac224b664affdc5785"},
+    {file = "pycodestyle-2.10.0-py2.py3-none-any.whl", hash = "sha256:8a4eaf0d0495c7395bdab3589ac2db602797d76207242c17d470186815706610"},
+    {file = "pycodestyle-2.10.0.tar.gz", hash = "sha256:347187bdb476329d98f695c213d7295a846d1152ff4fe9bacb8a9590b8ee7053"},
 ]

 [[package]]
@ -1102,14 +1116,14 @@ resolved_reference = "7abda245295da5280de172ceb9bbf2f6f1336e57"

 [[package]]
 name = "pyflakes"
-version = "2.5.0"
+version = "3.0.1"
 description = "passive checker of Python programs"
 category = "dev"
 optional = false
 python-versions = ">=3.6"
 files = [
-    {file = "pyflakes-2.5.0-py2.py3-none-any.whl", hash = "sha256:4579f67d887f804e67edb544428f264b7b24f435b263c4614f384135cea553d2"},
-    {file = "pyflakes-2.5.0.tar.gz", hash = "sha256:491feb020dca48ccc562a8c0cbe8df07ee13078df59813b83959cbdada312ea3"},
+    {file = "pyflakes-3.0.1-py2.py3-none-any.whl", hash = "sha256:ec55bf7fe21fff7f1ad2f7da62363d749e2a470500eab1b555334b67aa1ef8cf"},
+    {file = "pyflakes-3.0.1.tar.gz", hash = "sha256:ec8b276a6b60bd80defed25add7e439881c19e64850afd9b346283d4165fd0fd"},
 ]

 [[package]]
@ -1184,14 +1198,14 @@ six = ">=1.5"

 [[package]]
 name = "python-slugify"
-version = "7.0.0"
+version = "8.0.0"
 description = "A Python slugify application that also handles Unicode"
 category = "dev"
 optional = false
 python-versions = ">=3.7"
 files = [
-    {file = "python-slugify-7.0.0.tar.gz", hash = "sha256:7a0f21a39fa6c1c4bf2e5984c9b9ae944483fd10b54804cb0e23a3ccd4954f0b"},
-    {file = "python_slugify-7.0.0-py2.py3-none-any.whl", hash = "sha256:003aee64f9fd955d111549f96c4b58a3f40b9319383c70fad6277a4974bbf570"},
+    {file = "python-slugify-8.0.0.tar.gz", hash = "sha256:f1da83f3c7ab839b3f84543470cd95bdb5a81f1a0b80fed502f78b7dca256062"},
+    {file = "python_slugify-8.0.0-py2.py3-none-any.whl", hash = "sha256:51f217508df20a6c166c7821683384b998560adcf8f19a6c2ca8b460528ccd9c"},
 ]

 [package.dependencies]
@ -1296,22 +1310,22 @@ yaml = ["pyyaml (>=5.4)"]

 [[package]]
 name = "rich"
-version = "13.2.0"
+version = "13.3.1"
 description = "Render rich text, tables, progress bars, syntax highlighting, markdown and more to the terminal"
 category = "dev"
 optional = false
 python-versions = ">=3.7.0"
 files = [
-    {file = "rich-13.2.0-py3-none-any.whl", hash = "sha256:7c963f0d03819221e9ac561e1bc866e3f95a02248c1234daa48954e6d381c003"},
-    {file = "rich-13.2.0.tar.gz", hash = "sha256:f1a00cdd3eebf999a15d85ec498bfe0b1a77efe9b34f645768a54132ef444ac5"},
+    {file = "rich-13.3.1-py3-none-any.whl", hash = "sha256:8aa57747f3fc3e977684f0176a88e789be314a99f99b43b75d1e9cb5dc6db9e9"},
+    {file = "rich-13.3.1.tar.gz", hash = "sha256:125d96d20c92b946b983d0d392b84ff945461e5a06d3867e9f9e575f8697b67f"},
 ]

 [package.dependencies]
 markdown-it-py = ">=2.1.0,<3.0.0"
-pygments = ">=2.6.0,<3.0.0"
+pygments = ">=2.14.0,<3.0.0"

 [package.extras]
-jupyter = ["ipywidgets (>=7.5.1,<8.0.0)"]
+jupyter = ["ipywidgets (>=7.5.1,<9)"]

 [[package]]
 name = "six"
@ -1446,14 +1460,14 @@ files = [

 [[package]]
 name = "traitlets"
-version = "5.8.1"
+version = "5.9.0"
 description = "Traitlets Python configuration system"
 category = "dev"
 optional = false
 python-versions = ">=3.7"
 files = [
-    {file = "traitlets-5.8.1-py3-none-any.whl", hash = "sha256:a1ca5df6414f8b5760f7c5f256e326ee21b581742114545b462b35ffe3f04861"},
-    {file = "traitlets-5.8.1.tar.gz", hash = "sha256:32500888f5ff7bbf3b9267ea31748fa657aaf34d56d85e60f91dda7dc7f5785b"},
+    {file = "traitlets-5.9.0-py3-none-any.whl", hash = "sha256:9e6ec080259b9a5940c797d58b613b5e31441c2257b87c2e795c5228ae80d2d8"},
+    {file = "traitlets-5.9.0.tar.gz", hash = "sha256:f6cde21a9c68cf756af02035f72d5a723bf607e862e7be33ece505abf4a3bad9"},
 ]

 [package.extras]
@ -1462,14 +1476,14 @@ test = ["argcomplete (>=2.0)", "pre-commit", "pytest", "pytest-mock"]

 [[package]]
 name = "typing-extensions"
-version = "4.4.0"
+version = "4.5.0"
 description = "Backported and Experimental Type Hints for Python 3.7+"
 category = "dev"
 optional = false
 python-versions = ">=3.7"
 files = [
-    {file = "typing_extensions-4.4.0-py3-none-any.whl", hash = "sha256:16fa4864408f655d35ec496218b85f79b3437c829e93320c7c9215ccfd92489e"},
-    {file = "typing_extensions-4.4.0.tar.gz", hash = "sha256:1511434bb92bf8dd198c12b1cc812e800d4181cfcb867674e0f8279cc93087aa"},
+    {file = "typing_extensions-4.5.0-py3-none-any.whl", hash = "sha256:fb33085c39dd998ac16d1431ebc293a8b3eedd00fd4a32de0ff79002c19511b4"},
+    {file = "typing_extensions-4.5.0.tar.gz", hash = "sha256:5cb5f4a79139d699607b3ef622a1dedafa84e115ab0024e0d9c044a9479ca7cb"},
 ]

 [[package]]
@ -1536,4 +1550,4 @@ test = ["pytest", "pytest-cov"]
 [metadata]
 lock-version = "2.0"
 python-versions = "^3.9"
-content-hash = "c1e832a209ac63e5ba95044bf2a1128d68c730a473b71468c08ca9d51b59b472"
+content-hash = "1b34b8e66a585939f8d282eef00772743851df1797603ea980b59dd3aa799ede"
--- a/pyproject.toml
+++ b/pyproject.toml
@ -1,6 +1,6 @@
 [tool.poetry]
 name = "csv-metadata-quality"
-version = "0.6.0"
+version = "0.6.1"
 description="A simple, but opinionated CSV quality checking and fixing pipeline for CSVs in the DSpace ecosystem."
 authors = ["Alan Orth <alan.orth@gmail.com>"]
 license="GPL-3.0-only"
@ -12,26 +12,26 @@ csv-metadata-quality = 'csv_metadata_quality.__main__:main'

 [tool.poetry.dependencies]
 python = "^3.9"
-pandas = "^1.5.1"
-python-stdnum = "^1.17"
-requests = "^2.28.1"
-requests-cache = "^0.9.7"
+pandas = "^1.5.2"
+python-stdnum = "^1.18"
+requests = "^2.28.2"
+requests-cache = "^0.9.8"
 langid = "^1.1.6"
-colorama = "^0.4.5"
+colorama = "^0.4.6"
 ftfy = "^6.1.1"
 country-converter = {git = "https://github.com/alanorth/country_converter.git", rev = "myanmar-region"}
 pycountry = {git = "https://github.com/alanorth/pycountry", rev = "iso-codes-4.12.0"}

 [tool.poetry.dev-dependencies]
-pytest = "^7.2.0"
-flake8 = "^5.0.4"
+pytest = "^7.2.1"
+flake8 = "^6.0.0"
 pytest-clarity = "^1.0.1"
-black = "^22.10.0"
-isort = "^5.10.1"
-csvkit = "^1.0.7"
+black = "^23.1.0"
+isort = "^5.12.0"
+csvkit = "^1.1.0"

 [tool.poetry.group.dev.dependencies]
-ipython = "^8.7.0"
+ipython = "^8.10.0"

 [build-system]
 requires = ["poetry>=0.12"]
--- a/requirements-dev.txt
+++ b/requirements-dev.txt
@ -1,6 +1,6 @@
 agate-dbf==0.2.2 ; python_version >= "3.9" and python_version < "4.0"
 agate-excel==0.2.5 ; python_version >= "3.9" and python_version < "4.0"
-agate-sql==0.5.8 ; python_version >= "3.9" and python_version < "4.0"
+agate-sql==0.5.9 ; python_version >= "3.9" and python_version < "4.0"
 agate==1.7.1 ; python_version >= "3.9" and python_version < "4.0"
 appdirs==1.4.4 ; python_version >= "3.9" and python_version < "4.0"
 appnope==0.1.3 ; python_version >= "3.9" and python_version < "4.0" and sys_platform == "darwin"
@ -8,72 +8,72 @@ asttokens==2.2.1 ; python_version >= "3.9" and python_version < "4.0"
 attrs==22.2.0 ; python_version >= "3.9" and python_version < "4.0"
 babel==2.11.0 ; python_version >= "3.9" and python_version < "4.0"
 backcall==0.2.0 ; python_version >= "3.9" and python_version < "4.0"
-black==22.12.0 ; python_version >= "3.9" and python_version < "4.0"
+black==23.1.0 ; python_version >= "3.9" and python_version < "4.0"
 cattrs==22.2.0 ; python_version >= "3.9" and python_version < "4.0"
 certifi==2022.12.7 ; python_version >= "3.9" and python_version < "4"
 charset-normalizer==3.0.1 ; python_version >= "3.9" and python_version < "4"
 click==8.1.3 ; python_version >= "3.9" and python_version < "4.0"
 colorama==0.4.6 ; python_version >= "3.9" and python_version < "4.0"
 country-converter @ git+https://github.com/alanorth/country_converter.git@myanmar-region ; python_version >= "3.9" and python_version < "4.0"
-csvkit==1.1.0 ; python_version >= "3.9" and python_version < "4.0"
+csvkit==1.1.1 ; python_version >= "3.9" and python_version < "4.0"
 dbfread==2.0.7 ; python_version >= "3.9" and python_version < "4.0"
 decorator==5.1.1 ; python_version >= "3.9" and python_version < "4.0"
 et-xmlfile==1.1.0 ; python_version >= "3.9" and python_version < "4.0"
 exceptiongroup==1.1.0 ; python_version >= "3.9" and python_version < "3.11"
 executing==1.2.0 ; python_version >= "3.9" and python_version < "4.0"
-flake8==5.0.4 ; python_version >= "3.9" and python_version < "4.0"
+flake8==6.0.0 ; python_version >= "3.9" and python_version < "4.0"
 ftfy==6.1.1 ; python_version >= "3.9" and python_version < "4"
-greenlet==2.0.1 ; python_version >= "3.9" and (platform_machine == "aarch64" or platform_machine == "ppc64le" or platform_machine == "x86_64" or platform_machine == "amd64" or platform_machine == "AMD64" or platform_machine == "win32" or platform_machine == "WIN32") and python_version < "4.0"
+greenlet==2.0.2 ; python_version >= "3.9" and (platform_machine == "aarch64" or platform_machine == "ppc64le" or platform_machine == "x86_64" or platform_machine == "amd64" or platform_machine == "AMD64" or platform_machine == "win32" or platform_machine == "WIN32") and python_version < "4.0"
 idna==3.4 ; python_version >= "3.9" and python_version < "4"
 iniconfig==2.0.0 ; python_version >= "3.9" and python_version < "4.0"
-ipython==8.8.0 ; python_version >= "3.9" and python_version < "4.0"
+ipython==8.10.0 ; python_version >= "3.9" and python_version < "4.0"
 isodate==0.6.1 ; python_version >= "3.9" and python_version < "4.0"
-isort==5.11.4 ; python_version >= "3.9" and python_version < "4.0"
+isort==5.12.0 ; python_version >= "3.9" and python_version < "4.0"
 jedi==0.18.2 ; python_version >= "3.9" and python_version < "4.0"
 langid==1.1.6 ; python_version >= "3.9" and python_version < "4.0"
 leather==0.3.4 ; python_version >= "3.9" and python_version < "4.0"
-markdown-it-py==2.1.0 ; python_version >= "3.9" and python_version < "4.0"
+markdown-it-py==2.2.0 ; python_version >= "3.9" and python_version < "4.0"
 matplotlib-inline==0.1.6 ; python_version >= "3.9" and python_version < "4.0"
 mccabe==0.7.0 ; python_version >= "3.9" and python_version < "4.0"
 mdurl==0.1.2 ; python_version >= "3.9" and python_version < "4.0"
-mypy-extensions==0.4.3 ; python_version >= "3.9" and python_version < "4.0"
-numpy==1.24.1 ; python_version < "4.0" and python_version >= "3.9"
+mypy-extensions==1.0.0 ; python_version >= "3.9" and python_version < "4.0"
+numpy==1.24.2 ; python_version < "4.0" and python_version >= "3.9"
 olefile==0.46 ; python_version >= "3.9" and python_version < "4.0"
-openpyxl==3.0.10 ; python_version >= "3.9" and python_version < "4.0"
+openpyxl==3.1.1 ; python_version >= "3.9" and python_version < "4.0"
 packaging==23.0 ; python_version >= "3.9" and python_version < "4.0"
 pandas==1.5.3 ; python_version >= "3.9" and python_version < "4.0"
 parsedatetime==2.6 ; python_version >= "3.9" and python_version < "4.0"
 parso==0.8.3 ; python_version >= "3.9" and python_version < "4.0"
-pathspec==0.10.3 ; python_version >= "3.9" and python_version < "4.0"
+pathspec==0.11.0 ; python_version >= "3.9" and python_version < "4.0"
 pexpect==4.8.0 ; python_version >= "3.9" and python_version < "4.0" and sys_platform != "win32"
 pickleshare==0.7.5 ; python_version >= "3.9" and python_version < "4.0"
-platformdirs==2.6.2 ; python_version >= "3.9" and python_version < "4.0"
+platformdirs==3.0.0 ; python_version >= "3.9" and python_version < "4.0"
 pluggy==1.0.0 ; python_version >= "3.9" and python_version < "4.0"
 pprintpp==0.4.0 ; python_version >= "3.9" and python_version < "4.0"
-prompt-toolkit==3.0.36 ; python_version >= "3.9" and python_version < "4.0"
+prompt-toolkit==3.0.37 ; python_version >= "3.9" and python_version < "4.0"
 ptyprocess==0.7.0 ; python_version >= "3.9" and python_version < "4.0" and sys_platform != "win32"
 pure-eval==0.2.2 ; python_version >= "3.9" and python_version < "4.0"
-pycodestyle==2.9.1 ; python_version >= "3.9" and python_version < "4.0"
+pycodestyle==2.10.0 ; python_version >= "3.9" and python_version < "4.0"
 pycountry @ git+https://github.com/alanorth/pycountry@iso-codes-4.12.0 ; python_version >= "3.9" and python_version < "4.0"
-pyflakes==2.5.0 ; python_version >= "3.9" and python_version < "4.0"
+pyflakes==3.0.1 ; python_version >= "3.9" and python_version < "4.0"
 pygments==2.14.0 ; python_version >= "3.9" and python_version < "4.0"
 pytest-clarity==1.0.1 ; python_version >= "3.9" and python_version < "4.0"
 pytest==7.2.1 ; python_version >= "3.9" and python_version < "4.0"
 python-dateutil==2.8.2 ; python_version >= "3.9" and python_version < "4.0"
-python-slugify==7.0.0 ; python_version >= "3.9" and python_version < "4.0"
+python-slugify==8.0.0 ; python_version >= "3.9" and python_version < "4.0"
 python-stdnum==1.18 ; python_version >= "3.9" and python_version < "4.0"
 pytimeparse==1.1.8 ; python_version >= "3.9" and python_version < "4.0"
 pytz==2022.7.1 ; python_version >= "3.9" and python_version < "4.0"
 requests-cache==0.9.8 ; python_version >= "3.9" and python_version < "4.0"
 requests==2.28.2 ; python_version >= "3.9" and python_version < "4"
-rich==13.2.0 ; python_version >= "3.9" and python_version < "4.0"
+rich==13.3.1 ; python_version >= "3.9" and python_version < "4.0"
 six==1.16.0 ; python_version >= "3.9" and python_version < "4.0"
 sqlalchemy==1.4.46 ; python_version >= "3.9" and python_version < "4.0"
 stack-data==0.6.2 ; python_version >= "3.9" and python_version < "4.0"
 text-unidecode==1.3 ; python_version >= "3.9" and python_version < "4.0"
-tomli==2.0.1 ; python_version >= "3.9" and python_full_version < "3.11.0a7"
-traitlets==5.8.1 ; python_version >= "3.9" and python_version < "4.0"
-typing-extensions==4.4.0 ; python_version >= "3.9" and python_version < "3.10"
+tomli==2.0.1 ; python_version >= "3.9" and python_version < "3.11"
+traitlets==5.9.0 ; python_version >= "3.9" and python_version < "4.0"
+typing-extensions==4.5.0 ; python_version >= "3.9" and python_version < "3.10"
 url-normalize==1.4.3 ; python_version >= "3.9" and python_version < "4.0"
 urllib3==1.26.14 ; python_version >= "3.9" and python_version < "4"
 wcwidth==0.2.6 ; python_version >= "3.9" and python_version < "4"
--- a/requirements.txt
+++ b/requirements.txt
@ -9,7 +9,7 @@ exceptiongroup==1.1.0 ; python_version >= "3.9" and python_version < "3.11"
 ftfy==6.1.1 ; python_version >= "3.9" and python_version < "4"
 idna==3.4 ; python_version >= "3.9" and python_version < "4"
 langid==1.1.6 ; python_version >= "3.9" and python_version < "4.0"
-numpy==1.24.1 ; python_version < "4.0" and python_version >= "3.9"
+numpy==1.24.2 ; python_version < "4.0" and python_version >= "3.9"
 pandas==1.5.3 ; python_version >= "3.9" and python_version < "4.0"
 pycountry @ git+https://github.com/alanorth/pycountry@iso-codes-4.12.0 ; python_version >= "3.9" and python_version < "4.0"
 python-dateutil==2.8.2 ; python_version >= "3.9" and python_version < "4.0"
--- a/setup.py
+++ b/setup.py
@ -14,7 +14,7 @@ install_requires = [

 setuptools.setup(
    name="csv-metadata-quality",
-    version="0.6.0",
+    version="0.6.1",
    author="Alan Orth",
    author_email="aorth@mjanja.ch",
    description="A simple, but opinionated CSV quality checking and fixing pipeline for CSVs in the DSpace ecosystem.",
@ -23,7 +23,6 @@ setuptools.setup(
    long_description_content_type="text/markdown",
    url="https://github.com/alanorth/csv-metadata-quality",
    classifiers=[
-        "Programming Language :: Python :: 3.8",
        "Programming Language :: Python :: 3.9",
        "Programming Language :: Python :: 3.10",
        "License :: OSI Approved :: GNU General Public License v3 (GPLv3)",
Author	SHA1	Message	Date
Alan Orth	fdccdf7318	Version 0.6.1 Some checks failed continuous-integration/drone/push Build is failing Details	2023-02-23 13:46:56 +03:00
Alan Orth	ff2c986eec	setup.py: minimum python 3.9	2023-02-23 11:47:40 +03:00
Alan Orth	547574866e	Update requirements Generated with poetry export: $ poetry export --without-hashes -f requirements.txt > requirements.txt $ poetry export --without-hashes --with dev -f requirements.txt > requirements-dev.txt I am trying `--without-hashes` to work around an error on pip install when running in CI: ERROR: In --require-hashes mode, all requirements must have their versions pinned with ==	2023-02-23 11:46:24 +03:00
Alan Orth	8aa7b93d87	poetry.lock: run poetry update	2023-02-23 11:45:53 +03:00
Alan Orth	53fdb50906	csv_metadata_quality/check.py: run black Some checks failed continuous-integration/drone/push Build is failing Details	2023-02-18 22:10:04 +03:00
Alan Orth	3e0e9a7f8b	poetry.lock: run poetry update	2023-02-18 22:09:33 +03:00
Alan Orth	03d824b78e	pyproject.toml: update some dependencies	2023-02-18 22:09:05 +03:00
Alan Orth	8bc4cd419c	Strip filename descriptions before checking Some checks failed continuous-integration/drone/push Build is failing Details When checking for uncommon file extensions in the filename field we should strip descriptions that are meant for SAF Bundler, for example: Annual_Report_2020.pdf__description:Report. This ends up as a false positive that spams the output with warnings.	2023-02-13 11:00:57 +03:00
Alan Orth	bde38e9ed4	CHANGELOG.md: add notes about abstracts	2023-02-13 10:39:03 +03:00
Alan Orth	8db1e36a6d	csv_metadata_quality/app.py: skip abstract in separator check Also skip abstract in the separator check, since it's rare to have any "\|" here, but more likely that if one is present then it's for a reason.	2023-02-13 10:37:33 +03:00
Alan Orth	fbb625be5c	Ignore common non-SPDX licenses This is meant to catch licenses that are supposed to be SPDX but aren't, not licenses that aren't supposed to be SPDX. We have so many free-text license descriptions like "Copyrighted" and "Other" that I'm sick of seeing warnings for them!	2023-02-07 17:01:56 +03:00
Alan Orth	084b970798	CHANGELOG.md: add note about abstract field	2023-02-07 16:52:34 +03:00
Alan Orth	171b35b015	Add data/abstract-check.csv A test file with several whitespace and newline scenarios in the abstract. I am currently disabling whitespace/newline fixes in the abstract because they are too agressive.	2023-02-07 16:50:47 +03:00
Alan Orth	545bb8cd0c	csv_metadata_quality/app.py: disable whitespace on abstracts It's too aggressive on abstracts. If people paste in text from a PDF there are often newlines, and most of the time this is what they want.	2023-02-07 16:48:40 +03:00