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mirror of https://github.com/ilri/csv-metadata-quality.git synced 2025-07-02 04:27:24 +02:00

17 Commits

Author SHA1 Message Date
cbf94490f2 Version 0.4.3 2021-01-26 15:22:40 +02:00
f3d0d5ef07 setup.py: Remove Python 3.6
I actually removed Python 3.6 support a few weeks ago after updating
to Pandas 1.2.0, but forgot to update this.
2021-01-26 15:22:08 +02:00
4b7b99c94c CHANGELOG.md: Add note about multi-value separators 2021-01-26 15:20:22 +02:00
df670e81b9 README.md: Use badge from my Drone CI
All checks were successful
continuous-integration/drone/push Build is passing
I'm not using SourceHut anymore.
2021-01-26 14:38:50 +02:00
ae357d8c6c Revert "Update requirements"
This reverts commit ca80340f7a.

Nope, we still need the --without-hashes because this still fails
on Python 3.7, but not 3.8 or 3.9. From looking around it seems
that nobody can agree whether poetry should handle this, pip should
handle it, or upstream projects should pin their dependencies.
2021-01-26 14:15:31 +02:00
ca80340f7a Update requirements
Some checks failed
continuous-integration/drone/push Build is failing
Generated with poetry export:

    $ poetry export -f requirements.txt > requirements.txt
    $ poetry export --dev -f requirements.txt > requirements-dev.txt

Trying to see if we no longer need --without-hashes since we don't
support Python 3.6 anymore.
2021-01-26 11:46:05 +02:00
cc1743b86d Remove .build.yml
I will just use GitHub Actions and Drone.
2021-01-26 11:41:30 +02:00
bcb9885c6b Update requirements
Generated with poetry export:

    $ poetry export --without-hashes -f requirements.txt > requirements.txt
    $ poetry export --without-hashes --dev -f requirements.txt > requirements-dev.txt

I am trying `--without-hashes` to work around an error on pip install
when running on Python 3.6 in Travis:

    ERROR: In --require-hashes mode, all requirements must have their versions pinned with ==.
2021-01-26 10:36:48 +02:00
b484b75178 poetry.lock: Run poetry update 2021-01-26 10:36:04 +02:00
d3880a9dfa Remove Python 3.6 support
All checks were successful
continuous-integration/drone/push Build is passing
Pandas 1.2.0 apparently requires Python 3.7.1+.
2021-01-03 15:51:53 +02:00
7edb8b19d7 tests/test_check.py: Reformat with black 2021-01-03 15:50:21 +02:00
a6709c7f82 Update requirements
Some checks failed
continuous-integration/drone/push Build is failing
Generated with poetry export:

    $ poetry export --without-hashes -f requirements.txt > requirements.txt
    $ poetry export --without-hashes --dev -f requirements.txt > requirements-dev.txt

I am trying `--without-hashes` to work around an error on pip install
when running on Python 3.6 in Travis:

    ERROR: In --require-hashes mode, all requirements must have their versions pinned with ==.
2021-01-03 15:42:00 +02:00
d489ea4609 poetry.lock: Run poetry update 2021-01-03 15:41:08 +02:00
96634cbb67 pytest.ini: Change --strict to --strict-markers
This is deprecated since pytest 6.2.0.

See: https://docs.pytest.org/en/stable/deprecations.html#the-strict-command-line-option
2021-01-03 15:40:14 +02:00
29e67a0887 Add tests for unnecessary multi-value separators 2021-01-03 15:37:18 +02:00
32cea2055f data/test.csv: Add unnecessary multi-value separator 2021-01-03 15:33:04 +02:00
0dc66c5c4e Expand check/fix for multi-value separators
I just came across some metadata that had unnecessary multi-value
separators at the end of a field, causing a blank value to be used.

For example: "Kenya||Tanzania||"
2021-01-03 15:30:03 +02:00
17 changed files with 344 additions and 307 deletions

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@ -1,15 +0,0 @@
image: archlinux
packages:
- python-poetry
sources:
- https://git.sr.ht/~alanorth/csv-metadata-quality
tasks:
- setup: |
cd csv-metadata-quality
poetry install
- pytest: |
cd csv-metadata-quality
poetry run pytest
- testcli: |
cd csv-metadata-quality
poetry run csv-metadata-quality -i data/test.csv -o /tmp/test.csv -e -u --agrovoc-fields dc.subject,cg.coverage.country

View File

@ -46,20 +46,4 @@ steps:
- python setup.py install
- csv-metadata-quality -i data/test.csv -o /tmp/test.csv -e -u --agrovoc-fields dc.subject,cg.coverage.country
---
kind: pipeline
type: docker
name: python36
steps:
- name: test
image: python:3.6-slim
commands:
- id
- python -V
- pip install -r requirements-dev.txt
- pytest
- python setup.py install
- csv-metadata-quality -i data/test.csv -o /tmp/test.csv -e -u --agrovoc-fields dc.subject,cg.coverage.country
# vim: ts=2 sw=2 et

View File

@ -4,12 +4,15 @@ All notable changes to this project will be documented in this file.
The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/),
and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
## Unreleased
## [0.4.3] - 2021-01-26
### Changed
- Reformat with black
- Requires Python 3.7+ for pandas 1.2.0
### Updated
- Run `poetry update`
- Expand check/fix for multi-value separators to include metadata with invalid
separators at the end, for example "Kenya||Tanzania||"
## [0.4.2] - 2020-07-06
### Changed

View File

@ -1,7 +1,7 @@
# CSV Metadata Quality ![GitHub Actions](https://github.com/ilri/csv-metadata-quality/workflows/Build%20and%20Test/badge.svg) [![builds.sr.ht status](https://builds.sr.ht/~alanorth/csv-metadata-quality.svg)](https://builds.sr.ht/~alanorth/csv-metadata-quality?)
# CSV Metadata Quality ![GitHub Actions](https://github.com/ilri/csv-metadata-quality/workflows/Build%20and%20Test/badge.svg) [![Build Status](https://ci.mjanja.ch/api/badges/alanorth/csv-metadata-quality/status.svg)](https://ci.mjanja.ch/alanorth/csv-metadata-quality)
A simple, but opinionated metadata quality checker and fixer designed to work with CSVs in the DSpace ecosystem (though it could theoretically work on any CSV that uses Dublin Core fields as columns). The implementation is essentially a pipeline of checks and fixes that begins with splitting multi-value fields on the standard DSpace "||" separator, trimming leading/trailing whitespace, and then proceeding to more specialized cases like ISSNs, ISBNs, languages, etc.
Requires Python 3.6 or greater (3.8 recommended). CSV and Excel support comes from the [Pandas](https://pandas.pydata.org/) library, though your mileage may vary with Excel because this is much less tested.
Requires Python 3.7 or greater (3.8 recommended). CSV and Excel support comes from the [Pandas](https://pandas.pydata.org/) library, though your mileage may vary with Excel because this is much less tested.
## Functionality
@ -10,7 +10,7 @@ Requires Python 3.6 or greater (3.8 recommended). CSV and Excel support comes fr
- Experimental validation of titles and abstracts against item's Dublin Core language field
- Validate subjects against the AGROVOC REST API (see the `--agrovoc-fields` option)
- Fix leading, trailing, and excessive (ie, more than one) whitespace
- Fix invalid multi-value separators (`|`) using `--unsafe-fixes`
- Fix invalid and unnecessary multi-value separators (`|`) using `--unsafe-fixes`
- Fix problematic newlines (line feeds) using `--unsafe-fixes`
- Remove unnecessary Unicode like [non-breaking spaces](https://en.wikipedia.org/wiki/Non-breaking_space), [replacement characters](https://en.wikipedia.org/wiki/Specials_(Unicode_block)#Replacement_character), etc
- Check for "suspicious" characters that indicate encoding or copy/paste issues, for example "foreˆt" should be "forêt"
@ -56,6 +56,8 @@ You can enable several "unsafe" fixes with the `--unsafe-fixes` option. Currentl
### Invalid Multi-Value Separators
This is considered "unsafe" because it is *theoretically* possible for a single `|` character to be used legitimately in a metadata value, though in my experience it is always a typo. For example, if a user mistakenly writes `Kenya|Tanzania` when attempting to indicate two countries, the result will be one metadata value with the literal text `Kenya|Tanzania`. The `--unsafe-fixes` option will correct the invalid multi-value separator so that there are two metadata values, ie `Kenya||Tanzania`.
This will also remove unnecessary trailing multi-value separators, for example `Kenya||Tanzania||`.
### Newlines
This is considered "unsafe" because some systems give special importance to vertical space and render it properly. DSpace does not support rendering newlines in its XMLUI and has, at times, suffered from parsing errors that cause the import process to fail if an input file had newlines. The `--unsafe-fixes` option strips Unix line feeds (U+000A).

View File

@ -103,13 +103,13 @@ def run(argv):
# Fix: unnecessary Unicode
df[column] = df[column].apply(fix.unnecessary_unicode)
# Check: invalid multi-value separator
# Check: invalid and unnecessary multi-value separators
df[column] = df[column].apply(check.separators, field_name=column)
# Check: suspicious characters
df[column] = df[column].apply(check.suspicious_characters, field_name=column)
# Fix: invalid multi-value separator
# Fix: invalid and unnecessary multi-value separators
if args.unsafe_fixes:
df[column] = df[column].apply(fix.separators, field_name=column)
# Run whitespace fix again after fixing invalid separators

View File

@ -57,7 +57,11 @@ def isbn(field):
def separators(field, field_name):
"""Check for invalid multi-value separators (ie "|" or "|||").
"""Check for invalid and unnecessary multi-value separators, for example:
value|value
value|||value
value||value||
Prints the field with the invalid multi-value separator.
"""
@ -70,10 +74,16 @@ def separators(field, field_name):
# Try to split multi-value field on "||" separator
for value in field.split("||"):
# Check if the current value is blank
if value == "":
print(f"Unnecessary multi-value separator ({field_name}): {field}")
continue
# After splitting, see if there are any remaining "|" characters
match = re.findall(r"^.*?\|.*$", value)
# Check if there was a match
if match:
print(f"Invalid multi-value separator ({field_name}): {field}")

View File

@ -42,7 +42,14 @@ def whitespace(field, field_name):
def separators(field, field_name):
"""Fix for invalid multi-value separators (ie "|")."""
"""Fix for invalid and unnecessary multi-value separators, for example:
value|value
value|||value
value||value||
Prints the field with the invalid multi-value separator.
"""
# Skip fields with missing values
if pd.isna(field):
@ -53,6 +60,12 @@ def separators(field, field_name):
# Try to split multi-value field on "||" separator
for value in field.split("||"):
# Check if the value is blank and skip it
if value == "":
print(f"Fixing unnecessary multi-value separator ({field_name}): {field}")
continue
# After splitting, see if there are any remaining "|" characters
pattern = re.compile(r"\|")
match = re.findall(pattern, value)

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@ -1 +1 @@
VERSION = "0.4.2"
VERSION = "0.4.3"

View File

@ -28,3 +28,4 @@ Incorrect ISO 639-1 language,2019-09-26,,,es,,,
Incorrect ISO 639-3 language,2019-09-26,,,spa,,,
Composéd Unicode,2020-01-14,,,,,,
Decomposéd Unicode,2020-01-14,,,,,,
Unnecessary multi-value separator,2021-01-03,0378-5955||,,,,,

1 dc.title dc.date.issued dc.identifier.issn dc.identifier.isbn dc.language.iso dc.subject cg.coverage.country filename
28 Composéd Unicode 2020-01-14
29 Decomposéd Unicode 2020-01-14
30 Unnecessary multi-value separator 2021-01-03 0378-5955||
31

475
poetry.lock generated
View File

@ -62,8 +62,8 @@ python-versions = "*"
[[package]]
name = "appnope"
version = "0.1.0"
description = "Disable App Nap on OS X 10.9"
version = "0.1.2"
description = "Disable App Nap on macOS >= 10.9"
category = "dev"
optional = false
python-versions = "*"
@ -80,21 +80,21 @@ marker = "sys_platform == \"win32\""
[[package]]
name = "attrs"
version = "20.2.0"
version = "20.3.0"
description = "Classes Without Boilerplate"
category = "dev"
optional = false
python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
[package.extras]
dev = ["coverage (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "zope.interface", "sphinx", "sphinx-rtd-theme", "pre-commit"]
docs = ["sphinx", "sphinx-rtd-theme", "zope.interface"]
dev = ["coverage (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "zope.interface", "furo", "sphinx", "pre-commit"]
docs = ["furo", "sphinx", "zope.interface"]
tests = ["coverage (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "zope.interface"]
tests_no_zope = ["coverage (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six"]
[[package]]
name = "babel"
version = "2.8.0"
version = "2.9.0"
description = "Internationalization utilities"
category = "dev"
optional = false
@ -136,7 +136,7 @@ typing-extensions = ">=3.7.4"
[[package]]
name = "certifi"
version = "2020.6.20"
version = "2020.12.5"
description = "Python package for providing Mozilla's CA Bundle."
category = "main"
optional = false
@ -144,11 +144,11 @@ python-versions = "*"
[[package]]
name = "chardet"
version = "3.0.4"
version = "4.0.0"
description = "Universal encoding detector for Python 2 and 3"
category = "main"
optional = false
python-versions = "*"
python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*"
[[package]]
name = "click"
@ -291,7 +291,7 @@ six = "*"
[[package]]
name = "isort"
version = "5.6.4"
version = "5.7.0"
description = "A Python utility / library to sort Python imports."
category = "dev"
optional = false
@ -312,19 +312,19 @@ python-versions = "*"
[[package]]
name = "jedi"
version = "0.17.2"
version = "0.18.0"
description = "An autocompletion tool for Python that can be used for text editors."
category = "dev"
optional = false
python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*"
python-versions = ">=3.6"
marker = "python_version >= \"3.7\" and python_version < \"4.0\""
[package.extras]
qa = ["flake8 (3.7.9)"]
testing = ["Django (<3.1)", "colorama", "docopt", "pytest (>=3.9.0,<5.0.0)"]
qa = ["flake8 (3.8.3)", "mypy (0.782)"]
testing = ["Django (<3.1)", "colorama", "docopt", "pytest (<6.0.0)"]
[package.dependencies]
parso = ">=0.7.0,<0.8.0"
parso = ">=0.8.0,<0.9.0"
[[package]]
name = "langid"
@ -366,7 +366,7 @@ python-versions = "*"
[[package]]
name = "numpy"
version = "1.19.4"
version = "1.19.5"
description = "NumPy is the fundamental package for array computing with Python."
category = "main"
optional = false
@ -374,7 +374,7 @@ python-versions = ">=3.6"
[[package]]
name = "openpyxl"
version = "3.0.5"
version = "3.0.6"
description = "A Python library to read/write Excel 2010 xlsx/xlsm files"
category = "dev"
optional = false
@ -386,7 +386,7 @@ jdcal = "*"
[[package]]
name = "packaging"
version = "20.4"
version = "20.8"
description = "Core utilities for Python packages"
category = "dev"
optional = false
@ -394,23 +394,22 @@ python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
[package.dependencies]
pyparsing = ">=2.0.2"
six = "*"
[[package]]
name = "pandas"
version = "1.1.4"
version = "1.2.1"
description = "Powerful data structures for data analysis, time series, and statistics"
category = "main"
optional = false
python-versions = ">=3.6.1"
python-versions = ">=3.7.1"
[package.extras]
test = ["pytest (>=4.0.2)", "pytest-xdist", "hypothesis (>=3.58)"]
test = ["pytest (>=5.0.1)", "pytest-xdist", "hypothesis (>=3.58)"]
[package.dependencies]
numpy = ">=1.15.4"
numpy = ">=1.16.5"
python-dateutil = ">=2.7.3"
pytz = ">=2017.2"
pytz = ">=2017.3"
[[package]]
name = "parsedatetime"
@ -422,19 +421,20 @@ python-versions = "*"
[[package]]
name = "parso"
version = "0.7.1"
version = "0.8.1"
description = "A Python Parser"
category = "dev"
optional = false
python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
python-versions = ">=3.6"
marker = "python_version >= \"3.7\" and python_version < \"4.0\""
[package.extras]
testing = ["docopt", "pytest (>=3.0.7)"]
qa = ["flake8 (3.8.3)", "mypy (0.782)"]
testing = ["docopt", "pytest (<6.0.0)"]
[[package]]
name = "pathspec"
version = "0.8.0"
version = "0.8.1"
description = "Utility library for gitignore style pattern matching of file paths."
category = "dev"
optional = false
@ -474,7 +474,7 @@ dev = ["pre-commit", "tox"]
[[package]]
name = "prompt-toolkit"
version = "3.0.8"
version = "3.0.14"
description = "Library for building powerful interactive command lines in Python"
category = "dev"
optional = false
@ -486,7 +486,7 @@ wcwidth = "*"
[[package]]
name = "ptyprocess"
version = "0.6.0"
version = "0.7.0"
description = "Run a subprocess in a pseudo terminal"
category = "dev"
optional = false
@ -495,7 +495,7 @@ marker = "python_version >= \"3.7\" and python_version < \"4.0\" and sys_platfor
[[package]]
name = "py"
version = "1.9.0"
version = "1.10.0"
description = "library with cross-python path, ini-parsing, io, code, log facilities"
category = "dev"
optional = false
@ -527,7 +527,7 @@ python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
[[package]]
name = "pygments"
version = "2.7.2"
version = "2.7.4"
description = "Pygments is a syntax highlighting package written in Python."
category = "dev"
optional = false
@ -544,23 +544,22 @@ python-versions = ">=2.6, !=3.0.*, !=3.1.*, !=3.2.*"
[[package]]
name = "pytest"
version = "6.1.2"
version = "6.2.2"
description = "pytest: simple powerful testing with Python"
category = "dev"
optional = false
python-versions = ">=3.5"
python-versions = ">=3.6"
[package.extras]
checkqa_mypy = ["mypy (0.780)"]
testing = ["argcomplete", "hypothesis (>=3.56)", "mock", "nose", "requests", "xmlschema"]
[package.dependencies]
atomicwrites = ">=1.0"
attrs = ">=17.4.0"
attrs = ">=19.2.0"
colorama = "*"
iniconfig = "*"
packaging = "*"
pluggy = ">=0.12,<1.0"
pluggy = ">=0.12,<1.0.0a1"
py = ">=1.8.2"
toml = "*"
@ -603,7 +602,7 @@ text-unidecode = ">=1.3"
[[package]]
name = "python-stdnum"
version = "1.14"
version = "1.15"
description = "Python module to handle standardized numbers and codes"
category = "main"
optional = false
@ -624,7 +623,7 @@ python-versions = "*"
[[package]]
name = "pytz"
version = "2020.4"
version = "2020.5"
description = "World timezone definitions, modern and historical"
category = "main"
optional = false
@ -632,7 +631,7 @@ python-versions = "*"
[[package]]
name = "regex"
version = "2020.10.28"
version = "2020.11.13"
description = "Alternative regular expression module, to replace re."
category = "dev"
optional = false
@ -640,7 +639,7 @@ python-versions = "*"
[[package]]
name = "requests"
version = "2.24.0"
version = "2.25.1"
description = "Python HTTP for Humans."
category = "main"
optional = false
@ -652,9 +651,9 @@ socks = ["PySocks (>=1.5.6,<1.5.7 || >1.5.7)", "win-inet-pton"]
[package.dependencies]
certifi = ">=2017.4.17"
chardet = ">=3.0.2,<4"
chardet = ">=3.0.2,<5"
idna = ">=2.5,<3"
urllib3 = ">=1.21.1,<1.25.0 || >1.25.0,<1.25.1 || >1.25.1,<1.26"
urllib3 = ">=1.21.1,<1.27"
[[package]]
name = "requests-cache"
@ -677,7 +676,7 @@ python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*"
[[package]]
name = "sqlalchemy"
version = "1.3.20"
version = "1.3.22"
description = "Database Abstraction Library"
category = "dev"
optional = false
@ -736,7 +735,7 @@ ipython-genutils = "*"
[[package]]
name = "typed-ast"
version = "1.4.1"
version = "1.4.2"
description = "a fork of Python 2 and 3 ast modules with type comment support"
category = "dev"
optional = false
@ -752,7 +751,7 @@ python-versions = "*"
[[package]]
name = "urllib3"
version = "1.25.11"
version = "1.26.2"
description = "HTTP library with thread-safe connection pooling, file post, and more."
category = "main"
optional = false
@ -804,20 +803,20 @@ appdirs = [
{file = "appdirs-1.4.4.tar.gz", hash = "sha256:7d5d0167b2b1ba821647616af46a749d1c653740dd0d2415100fe26e27afdf41"},
]
appnope = [
{file = "appnope-0.1.0-py2.py3-none-any.whl", hash = "sha256:5b26757dc6f79a3b7dc9fab95359328d5747fcb2409d331ea66d0272b90ab2a0"},
{file = "appnope-0.1.0.tar.gz", hash = "sha256:8b995ffe925347a2138d7ac0fe77155e4311a0ea6d6da4f5128fe4b3cbe5ed71"},
{file = "appnope-0.1.2-py2.py3-none-any.whl", hash = "sha256:93aa393e9d6c54c5cd570ccadd8edad61ea0c4b9ea7a01409020c9aa019eb442"},
{file = "appnope-0.1.2.tar.gz", hash = "sha256:dd83cd4b5b460958838f6eb3000c660b1f9caf2a5b1de4264e941512f603258a"},
]
atomicwrites = [
{file = "atomicwrites-1.4.0-py2.py3-none-any.whl", hash = "sha256:6d1784dea7c0c8d4a5172b6c620f40b6e4cbfdf96d783691f2e1302a7b88e197"},
{file = "atomicwrites-1.4.0.tar.gz", hash = "sha256:ae70396ad1a434f9c7046fd2dd196fc04b12f9e91ffb859164193be8b6168a7a"},
]
attrs = [
{file = "attrs-20.2.0-py2.py3-none-any.whl", hash = "sha256:fce7fc47dfc976152e82d53ff92fa0407700c21acd20886a13777a0d20e655dc"},
{file = "attrs-20.2.0.tar.gz", hash = "sha256:26b54ddbbb9ee1d34d5d3668dd37d6cf74990ab23c828c2888dccdceee395594"},
{file = "attrs-20.3.0-py2.py3-none-any.whl", hash = "sha256:31b2eced602aa8423c2aea9c76a724617ed67cf9513173fd3a4f03e3a929c7e6"},
{file = "attrs-20.3.0.tar.gz", hash = "sha256:832aa3cde19744e49938b91fea06d69ecb9e649c93ba974535d08ad92164f700"},
]
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View File

@ -1,6 +1,6 @@
[tool.poetry]
name = "csv-metadata-quality"
version = "0.4.2"
version = "0.4.3"
description="A simple, but opinionated CSV quality checking and fixing pipeline for CSVs in the DSpace ecosystem."
authors = ["Alan Orth <alan.orth@gmail.com>"]
license="GPL-3.0-only"

View File

@ -1,5 +1,5 @@
[pytest]
addopts= -rsxX -s -v --strict --capture=sys
addopts= -rsxX -s -v --strict-markers --capture=sys
filterwarnings =
error::UserWarning
ignore:.*U.* is deprecated:DeprecationWarning

View File

@ -3,14 +3,14 @@ agate-dbf==0.2.2
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agate-sql==0.5.5
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black==20.8b1
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csvkit==1.0.5
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numpy==1.19.5
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packaging==20.8
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parsedatetime==2.6
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py==1.9.0
prompt-toolkit==3.0.14; python_version >= "3.7" and python_version < "4.0"
ptyprocess==0.7.0; python_version >= "3.7" and python_version < "4.0" and sys_platform != "win32"
py==1.10.0
pycodestyle==2.6.0
pycountry==19.8.18
pyflakes==2.2.0
pygments==2.7.2; python_version >= "3.7" and python_version < "4.0"
pygments==2.7.4; python_version >= "3.7" and python_version < "4.0"
pyparsing==2.4.7
pytest==6.1.2
pytest==6.2.2
pytest-clarity==0.3.0a0
python-dateutil==2.8.1
python-slugify==4.0.1
python-stdnum==1.14
python-stdnum==1.15
pytimeparse==1.1.8
pytz==2020.4
regex==2020.10.28
requests==2.24.0
pytz==2020.5
regex==2020.11.13
requests==2.25.1
requests-cache==0.5.2
six==1.15.0
sqlalchemy==1.3.20
sqlalchemy==1.3.22
termcolor==1.1.0
text-unidecode==1.3
toml==0.10.2
traitlets==5.0.5; python_version >= "3.7" and python_version < "4.0"
typed-ast==1.4.1
typed-ast==1.4.2
typing-extensions==3.7.4.3
urllib3==1.25.11
urllib3==1.26.2
wcwidth==0.2.5; python_version >= "3.7" and python_version < "4.0"
xlrd==1.2.0

View File

@ -1,15 +1,15 @@
certifi==2020.6.20
chardet==3.0.4
certifi==2020.12.5
chardet==4.0.0
idna==2.10
langid==1.1.6
numpy==1.19.4
pandas==1.1.4
numpy==1.19.5
pandas==1.2.1
pycountry==19.8.18
python-dateutil==2.8.1
python-stdnum==1.14
pytz==2020.4
requests==2.24.0
python-stdnum==1.15
pytz==2020.5
requests==2.25.1
requests-cache==0.5.2
six==1.15.0
urllib3==1.25.11
urllib3==1.26.2
xlrd==1.2.0

View File

@ -14,7 +14,7 @@ install_requires = [
setuptools.setup(
name="csv-metadata-quality",
version="0.4.2",
version="0.4.3",
author="Alan Orth",
author_email="aorth@mjanja.ch",
description="A simple, but opinionated CSV quality checking and fixing pipeline for CSVs in the DSpace ecosystem.",
@ -23,7 +23,6 @@ setuptools.setup(
long_description_content_type="text/markdown",
url="https://github.com/alanorth/csv-metadata-quality",
classifiers=[
"Programming Language :: Python :: 3.6",
"Programming Language :: Python :: 3.7",
"Programming Language :: Python :: 3.8",
"Programming Language :: Python :: 3.9",

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@ -59,6 +59,21 @@ def test_check_invalid_separators(capsys):
assert captured.out == f"Invalid multi-value separator ({field_name}): {value}\n"
def test_check_unnecessary_separators(capsys):
"""Test checking unnecessary multi-value separators."""
field = "Alan||Orth||"
field_name = "dc.contributor.author"
check.separators(field, field_name)
captured = capsys.readouterr()
assert (
captured.out == f"Unnecessary multi-value separator ({field_name}): {field}\n"
)
def test_check_valid_separators():
"""Test checking valid multi-value separators."""

View File

@ -41,6 +41,16 @@ def test_fix_invalid_separators():
assert fix.separators(value, field_name) == "Alan||Orth"
def test_fix_unnecessary_separators():
"""Test fixing unnecessary multi-value separators."""
field = "Alan||Orth||"
field_name = "dc.contributor.author"
assert fix.separators(field, field_name) == "Alan||Orth"
def test_fix_unnecessary_unicode():
"""Test fixing unnecessary Unicode."""