Update notes

content/post/2018-01.md

@@ -918,6 +918,43 @@ $ time schedtool -D -e ionice -c2 -n7 nice -n19 /home/cgspace.cgiar.org/bin/dspa
 - Peter emailed to ask why [this item](https://cgspace.cgiar.org/handle/10568/88090) doesn't have an Altmetric badge on CGSpace but does have one on the [Altmetric dashboard](https://www.altmetric.com/details/26709041)
 - Looks like our badge code calls the `handle` endpoint which doesn't exist:
 
+```
 https://api.altmetric.com/v1/handle/10568/88090
+```
 
 - I told Peter we should keep an eye out and try again next week
+
+## 2018-01-20
+
+- Run the authority indexing script on CGSpace and of course it died:
+
+```
+$ time schedtool -D -e ionice -c2 -n7 nice -n19 /home/cgspace.cgiar.org/bin/dspace index-authority 
+Retrieving all data 
+Initialize org.dspace.authority.indexer.DSpaceAuthorityIndexer 
+Exception: null
+java.lang.NullPointerException
+        at org.dspace.authority.AuthorityValueGenerator.generateRaw(AuthorityValueGenerator.java:82)
+        at org.dspace.authority.AuthorityValueGenerator.generate(AuthorityValueGenerator.java:39)
+        at org.dspace.authority.indexer.DSpaceAuthorityIndexer.prepareNextValue(DSpaceAuthorityIndexer.java:201)
+        at org.dspace.authority.indexer.DSpaceAuthorityIndexer.hasMore(DSpaceAuthorityIndexer.java:132)
+        at org.dspace.authority.indexer.DSpaceAuthorityIndexer.hasMore(DSpaceAuthorityIndexer.java:144)
+        at org.dspace.authority.indexer.DSpaceAuthorityIndexer.hasMore(DSpaceAuthorityIndexer.java:144)
+        at org.dspace.authority.indexer.DSpaceAuthorityIndexer.hasMore(DSpaceAuthorityIndexer.java:159)
+        at org.dspace.authority.indexer.DSpaceAuthorityIndexer.hasMore(DSpaceAuthorityIndexer.java:144)
+        at org.dspace.authority.indexer.DSpaceAuthorityIndexer.hasMore(DSpaceAuthorityIndexer.java:144)
+        at org.dspace.authority.indexer.AuthorityIndexClient.main(AuthorityIndexClient.java:61)
+        at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
+        at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
+        at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
+        at java.lang.reflect.Method.invoke(Method.java:498)
+        at org.dspace.app.launcher.ScriptLauncher.runOneCommand(ScriptLauncher.java:226)
+        at org.dspace.app.launcher.ScriptLauncher.main(ScriptLauncher.java:78)
+ 
+real    7m2.241s
+user    1m33.198s
+sys     0m12.317s
+```
+
+- I tested the abstract cleanups on Bioversity's Journal Articles collection again that I had started a few days ago
+- In the end there were 324 items in the collection that were Limited Access, but only 199 had abstracts

public/2018-01/index.html

@@ -92,7 +92,7 @@ Danny wrote to ask for help renewing the wildcard ilri.org certificate and I adv
 
 <meta property="article:published_time" content="2018-01-02T08:35:54-08:00"/>
 
-<meta property="article:modified_time" content="2018-01-19T17:45:27&#43;02:00"/>
+<meta property="article:modified_time" content="2018-01-19T20:21:12&#43;02:00"/>
 
 
 
@@ -194,9 +194,9 @@ Danny wrote to ask for help renewing the wildcard ilri.org certificate and I adv
   "@type": "BlogPosting",
   "headline": "January, 2018",
   "url": "https://alanorth.github.io/cgspace-notes/2018-01/",
-  "wordCount": "5116",
+  "wordCount": "5226",
   "datePublished": "2018-01-02T08:35:54-08:00",
-  "dateModified": "2018-01-19T17:45:27&#43;02:00",
+  "dateModified": "2018-01-19T20:21:12&#43;02:00",
   "author": {
     "@type": "Person",
     "name": "Alan Orth"
@@ -1273,12 +1273,51 @@ $ time schedtool -D -e ionice -c2 -n7 nice -n19 /home/cgspace.cgiar.org/bin/dspa
 <li>Looks like our badge code calls the <code>handle</code> endpoint which doesn&rsquo;t exist:</li>
 </ul>
 
-<p><a href="https://api.altmetric.com/v1/handle/10568/88090">https://api.altmetric.com/v1/handle/10568/88090</a></p>
+<pre><code>https://api.altmetric.com/v1/handle/10568/88090
+</code></pre>
 
 <ul>
 <li>I told Peter we should keep an eye out and try again next week</li>
 </ul>
 
+<h2 id="2018-01-20">2018-01-20</h2>
+
+<ul>
+<li>Run the authority indexing script on CGSpace and of course it died:</li>
+</ul>
+
+<pre><code>$ time schedtool -D -e ionice -c2 -n7 nice -n19 /home/cgspace.cgiar.org/bin/dspace index-authority 
+Retrieving all data 
+Initialize org.dspace.authority.indexer.DSpaceAuthorityIndexer 
+Exception: null
+java.lang.NullPointerException
+        at org.dspace.authority.AuthorityValueGenerator.generateRaw(AuthorityValueGenerator.java:82)
+        at org.dspace.authority.AuthorityValueGenerator.generate(AuthorityValueGenerator.java:39)
+        at org.dspace.authority.indexer.DSpaceAuthorityIndexer.prepareNextValue(DSpaceAuthorityIndexer.java:201)
+        at org.dspace.authority.indexer.DSpaceAuthorityIndexer.hasMore(DSpaceAuthorityIndexer.java:132)
+        at org.dspace.authority.indexer.DSpaceAuthorityIndexer.hasMore(DSpaceAuthorityIndexer.java:144)
+        at org.dspace.authority.indexer.DSpaceAuthorityIndexer.hasMore(DSpaceAuthorityIndexer.java:144)
+        at org.dspace.authority.indexer.DSpaceAuthorityIndexer.hasMore(DSpaceAuthorityIndexer.java:159)
+        at org.dspace.authority.indexer.DSpaceAuthorityIndexer.hasMore(DSpaceAuthorityIndexer.java:144)
+        at org.dspace.authority.indexer.DSpaceAuthorityIndexer.hasMore(DSpaceAuthorityIndexer.java:144)
+        at org.dspace.authority.indexer.AuthorityIndexClient.main(AuthorityIndexClient.java:61)
+        at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
+        at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
+        at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
+        at java.lang.reflect.Method.invoke(Method.java:498)
+        at org.dspace.app.launcher.ScriptLauncher.runOneCommand(ScriptLauncher.java:226)
+        at org.dspace.app.launcher.ScriptLauncher.main(ScriptLauncher.java:78)
+ 
+real    7m2.241s
+user    1m33.198s
+sys     0m12.317s
+</code></pre>
+
+<ul>
+<li>I tested the abstract cleanups on Bioversity&rsquo;s Journal Articles collection again that I had started a few days ago</li>
+<li>In the end there were 324 items in the collection that were Limited Access, but only 199 had abstracts</li>
+</ul>
+
   
 
   

public/sitemap.xml

@@ -4,7 +4,7 @@
   
   <url>
     <loc>https://alanorth.github.io/cgspace-notes/2018-01/</loc>
-    <lastmod>2018-01-19T17:45:27+02:00</lastmod>
+    <lastmod>2018-01-19T20:21:12+02:00</lastmod>
   </url>
   
   <url>
@@ -144,7 +144,7 @@
   
   <url>
     <loc>https://alanorth.github.io/cgspace-notes/</loc>
-    <lastmod>2018-01-19T17:45:27+02:00</lastmod>
+    <lastmod>2018-01-19T20:21:12+02:00</lastmod>
     <priority>0</priority>
   </url>
   
@@ -155,7 +155,7 @@
   
   <url>
     <loc>https://alanorth.github.io/cgspace-notes/tags/notes/</loc>
-    <lastmod>2018-01-19T17:45:27+02:00</lastmod>
+    <lastmod>2018-01-19T20:21:12+02:00</lastmod>
     <priority>0</priority>
   </url>
   
@@ -167,13 +167,13 @@
   
   <url>
     <loc>https://alanorth.github.io/cgspace-notes/post/</loc>
-    <lastmod>2018-01-19T17:45:27+02:00</lastmod>
+    <lastmod>2018-01-19T20:21:12+02:00</lastmod>
     <priority>0</priority>
   </url>
   
   <url>
     <loc>https://alanorth.github.io/cgspace-notes/tags/</loc>
-    <lastmod>2018-01-19T17:45:27+02:00</lastmod>
+    <lastmod>2018-01-19T20:21:12+02:00</lastmod>
     <priority>0</priority>
   </url>