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Update notes
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@ -918,6 +918,43 @@ $ time schedtool -D -e ionice -c2 -n7 nice -n19 /home/cgspace.cgiar.org/bin/dspa
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- Peter emailed to ask why [this item](https://cgspace.cgiar.org/handle/10568/88090) doesn't have an Altmetric badge on CGSpace but does have one on the [Altmetric dashboard](https://www.altmetric.com/details/26709041)
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- Looks like our badge code calls the `handle` endpoint which doesn't exist:
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```
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https://api.altmetric.com/v1/handle/10568/88090
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```
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- I told Peter we should keep an eye out and try again next week
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## 2018-01-20
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- Run the authority indexing script on CGSpace and of course it died:
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```
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$ time schedtool -D -e ionice -c2 -n7 nice -n19 /home/cgspace.cgiar.org/bin/dspace index-authority
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Retrieving all data
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Initialize org.dspace.authority.indexer.DSpaceAuthorityIndexer
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Exception: null
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java.lang.NullPointerException
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at org.dspace.authority.AuthorityValueGenerator.generateRaw(AuthorityValueGenerator.java:82)
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at org.dspace.authority.AuthorityValueGenerator.generate(AuthorityValueGenerator.java:39)
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at org.dspace.authority.indexer.DSpaceAuthorityIndexer.prepareNextValue(DSpaceAuthorityIndexer.java:201)
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at org.dspace.authority.indexer.DSpaceAuthorityIndexer.hasMore(DSpaceAuthorityIndexer.java:132)
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at org.dspace.authority.indexer.DSpaceAuthorityIndexer.hasMore(DSpaceAuthorityIndexer.java:144)
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at org.dspace.authority.indexer.DSpaceAuthorityIndexer.hasMore(DSpaceAuthorityIndexer.java:144)
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at org.dspace.authority.indexer.DSpaceAuthorityIndexer.hasMore(DSpaceAuthorityIndexer.java:159)
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at org.dspace.authority.indexer.DSpaceAuthorityIndexer.hasMore(DSpaceAuthorityIndexer.java:144)
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at org.dspace.authority.indexer.DSpaceAuthorityIndexer.hasMore(DSpaceAuthorityIndexer.java:144)
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at org.dspace.authority.indexer.AuthorityIndexClient.main(AuthorityIndexClient.java:61)
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at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
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at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
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at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
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at java.lang.reflect.Method.invoke(Method.java:498)
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at org.dspace.app.launcher.ScriptLauncher.runOneCommand(ScriptLauncher.java:226)
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at org.dspace.app.launcher.ScriptLauncher.main(ScriptLauncher.java:78)
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real 7m2.241s
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user 1m33.198s
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sys 0m12.317s
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```
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- I tested the abstract cleanups on Bioversity's Journal Articles collection again that I had started a few days ago
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- In the end there were 324 items in the collection that were Limited Access, but only 199 had abstracts
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@ -92,7 +92,7 @@ Danny wrote to ask for help renewing the wildcard ilri.org certificate and I adv
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<meta property="article:published_time" content="2018-01-02T08:35:54-08:00"/>
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<meta property="article:modified_time" content="2018-01-19T17:45:27+02:00"/>
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<meta property="article:modified_time" content="2018-01-19T20:21:12+02:00"/>
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@ -194,9 +194,9 @@ Danny wrote to ask for help renewing the wildcard ilri.org certificate and I adv
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"@type": "BlogPosting",
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"headline": "January, 2018",
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"url": "https://alanorth.github.io/cgspace-notes/2018-01/",
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"wordCount": "5116",
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"wordCount": "5226",
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"datePublished": "2018-01-02T08:35:54-08:00",
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"dateModified": "2018-01-19T17:45:27+02:00",
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"dateModified": "2018-01-19T20:21:12+02:00",
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"author": {
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"@type": "Person",
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"name": "Alan Orth"
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@ -1273,12 +1273,51 @@ $ time schedtool -D -e ionice -c2 -n7 nice -n19 /home/cgspace.cgiar.org/bin/dspa
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<li>Looks like our badge code calls the <code>handle</code> endpoint which doesn’t exist:</li>
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</ul>
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<p><a href="https://api.altmetric.com/v1/handle/10568/88090">https://api.altmetric.com/v1/handle/10568/88090</a></p>
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<pre><code>https://api.altmetric.com/v1/handle/10568/88090
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</code></pre>
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<ul>
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<li>I told Peter we should keep an eye out and try again next week</li>
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</ul>
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<h2 id="2018-01-20">2018-01-20</h2>
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<ul>
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<li>Run the authority indexing script on CGSpace and of course it died:</li>
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</ul>
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<pre><code>$ time schedtool -D -e ionice -c2 -n7 nice -n19 /home/cgspace.cgiar.org/bin/dspace index-authority
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Retrieving all data
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Initialize org.dspace.authority.indexer.DSpaceAuthorityIndexer
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Exception: null
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java.lang.NullPointerException
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at org.dspace.authority.AuthorityValueGenerator.generateRaw(AuthorityValueGenerator.java:82)
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at org.dspace.authority.AuthorityValueGenerator.generate(AuthorityValueGenerator.java:39)
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at org.dspace.authority.indexer.DSpaceAuthorityIndexer.prepareNextValue(DSpaceAuthorityIndexer.java:201)
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at org.dspace.authority.indexer.DSpaceAuthorityIndexer.hasMore(DSpaceAuthorityIndexer.java:132)
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at org.dspace.authority.indexer.DSpaceAuthorityIndexer.hasMore(DSpaceAuthorityIndexer.java:144)
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at org.dspace.authority.indexer.DSpaceAuthorityIndexer.hasMore(DSpaceAuthorityIndexer.java:144)
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at org.dspace.authority.indexer.DSpaceAuthorityIndexer.hasMore(DSpaceAuthorityIndexer.java:159)
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at org.dspace.authority.indexer.DSpaceAuthorityIndexer.hasMore(DSpaceAuthorityIndexer.java:144)
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at org.dspace.authority.indexer.DSpaceAuthorityIndexer.hasMore(DSpaceAuthorityIndexer.java:144)
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at org.dspace.authority.indexer.AuthorityIndexClient.main(AuthorityIndexClient.java:61)
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at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
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at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
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at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
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at java.lang.reflect.Method.invoke(Method.java:498)
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at org.dspace.app.launcher.ScriptLauncher.runOneCommand(ScriptLauncher.java:226)
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at org.dspace.app.launcher.ScriptLauncher.main(ScriptLauncher.java:78)
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real 7m2.241s
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user 1m33.198s
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sys 0m12.317s
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</code></pre>
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<ul>
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<li>I tested the abstract cleanups on Bioversity’s Journal Articles collection again that I had started a few days ago</li>
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<li>In the end there were 324 items in the collection that were Limited Access, but only 199 had abstracts</li>
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</ul>
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@ -4,7 +4,7 @@
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<url>
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<loc>https://alanorth.github.io/cgspace-notes/2018-01/</loc>
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<lastmod>2018-01-19T17:45:27+02:00</lastmod>
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<lastmod>2018-01-19T20:21:12+02:00</lastmod>
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</url>
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<url>
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@ -144,7 +144,7 @@
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<url>
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<loc>https://alanorth.github.io/cgspace-notes/</loc>
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<lastmod>2018-01-19T17:45:27+02:00</lastmod>
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<lastmod>2018-01-19T20:21:12+02:00</lastmod>
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<priority>0</priority>
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</url>
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@ -155,7 +155,7 @@
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<url>
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<loc>https://alanorth.github.io/cgspace-notes/tags/notes/</loc>
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<lastmod>2018-01-19T17:45:27+02:00</lastmod>
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<lastmod>2018-01-19T20:21:12+02:00</lastmod>
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<priority>0</priority>
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</url>
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@ -167,13 +167,13 @@
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<url>
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<loc>https://alanorth.github.io/cgspace-notes/post/</loc>
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<lastmod>2018-01-19T17:45:27+02:00</lastmod>
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<lastmod>2018-01-19T20:21:12+02:00</lastmod>
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<priority>0</priority>
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</url>
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<url>
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<loc>https://alanorth.github.io/cgspace-notes/tags/</loc>
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<lastmod>2018-01-19T17:45:27+02:00</lastmod>
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<lastmod>2018-01-19T20:21:12+02:00</lastmod>
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<priority>0</priority>
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</url>
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