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Add notes for 2023-06-06
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@ -25,11 +25,29 @@ categories: ["Notes"]
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```
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- In [2022-11]({{< relref "2022-11.md" >}}) an upstream Java update broke the DSpace 6 Handle server so we will have to pin this again after the upgrade to Ubuntu 22.04
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- After the upgrade I made sure CGSpace was working, then proceeded to upgrade PostgreSQL from 12 to 14, like I did on DSpace Test in 2023-03
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- After the upgrade I made sure CGSpace was working, then proceeded to upgrade PostgreSQL from 12 to 14, like I did on [DSpace Test in 2023-03]({{< relref "2023-03.md" >}})
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- Then I had to downgrade OpenJDK to fix the Handle server using the ones I had previously downloaded for Ubuntu 20.04 because they no longer exist on Launchpad:
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```console
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# dpkg -i openjdk-8-j*8u342-b07*.deb
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```
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- Export CGSpace to fix missing Initiative collection mappings
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- Start a harvest on AReS
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- Work on the DSpace 7 migration a bit more
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- I decided to rebase and drop all the submission form edits because they conflict every time upstream changes!
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## 2023-06-06
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- Fix some incorrect ORCID identifiers for an Alliance author on CGSpace
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- Export our list of ORCID identifiers, resolve them, and update the records in CGSpace:
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```console
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$ cat dspace/config/controlled-vocabularies/cg-creator-identifier.xml 2022-09-22-add-orcids.csv| grep -oE '[A-Z0-9]{4}-[A-Z0-9]{4}-[A-Z0-9]{4}-[A-Z0-9]{4}' | sort -u > /tmp/2023-06-06-orcids.txt
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$ ./ilri/resolve_orcids.py -i /tmp/2023-06-06-orcids.txt -o /tmp/2023-06-06-orcids-names.txt -d
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$ ./ilri/update_orcids.py -i /tmp/2023-06-06-orcids-names.txt -db dspacetest -u dspace -p 'ffff' -m 247
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```
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- Start working on updating the MODS schema in CGSpace from 3.1 to 3.8 based on Stefano and Salem's work last year
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<!-- vim: set sw=2 ts=2: -->
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@ -24,7 +24,7 @@ From what I can see we need to upgrade the MODS schema from 3.1 to 3.7 and then
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<meta property="og:type" content="article" />
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<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/2023-06/" />
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<meta property="article:published_time" content="2023-06-02T10:29:36+03:00" />
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<meta property="article:modified_time" content="2023-06-02T16:33:48+03:00" />
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<meta property="article:modified_time" content="2023-06-04T11:00:30+03:00" />
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@ -54,9 +54,9 @@ From what I can see we need to upgrade the MODS schema from 3.1 to 3.7 and then
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"@type": "BlogPosting",
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"headline": "June, 2023",
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"url": "https://alanorth.github.io/cgspace-notes/2023-06/",
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"wordCount": "209",
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"wordCount": "327",
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"datePublished": "2023-06-02T10:29:36+03:00",
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"dateModified": "2023-06-02T16:33:48+03:00",
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"dateModified": "2023-06-04T11:00:30+03:00",
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"author": {
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"@type": "Person",
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"name": "Alan Orth"
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@ -155,11 +155,31 @@ From what I can see we need to upgrade the MODS schema from 3.1 to 3.7 and then
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<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;"><code class="language-console" data-lang="console"><span style="display:flex;"><span># apt-mark hold openjdk-8-jdk-headless:amd64 openjdk-8-jre-headless:amd64
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</span></span></code></pre></div><ul>
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<li>In <a href="/cgspace-notes/2022-11/">2022-11</a> an upstream Java update broke the DSpace 6 Handle server so we will have to pin this again after the upgrade to Ubuntu 22.04</li>
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<li>After the upgrade I made sure CGSpace was working, then proceeded to upgrade PostgreSQL from 12 to 14, like I did on DSpace Test in 2023-03</li>
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<li>After the upgrade I made sure CGSpace was working, then proceeded to upgrade PostgreSQL from 12 to 14, like I did on <a href="/cgspace-notes/2023-03/">DSpace Test in 2023-03</a></li>
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<li>Then I had to downgrade OpenJDK to fix the Handle server using the ones I had previously downloaded for Ubuntu 20.04 because they no longer exist on Launchpad:</li>
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</ul>
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<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;"><code class="language-console" data-lang="console"><span style="display:flex;"><span># dpkg -i openjdk-8-j*8u342-b07*.deb
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</span></span></code></pre></div><!-- raw HTML omitted -->
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</span></span></code></pre></div><ul>
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<li>Export CGSpace to fix missing Initiative collection mappings</li>
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<li>Start a harvest on AReS</li>
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<li>Work on the DSpace 7 migration a bit more
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<ul>
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<li>I decided to rebase and drop all the submission form edits because they conflict every time upstream changes!</li>
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</ul>
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</li>
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</ul>
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<h2 id="2023-06-06">2023-06-06</h2>
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<ul>
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<li>Fix some incorrect ORCID identifiers for an Alliance author on CGSpace</li>
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<li>Export our list of ORCID identifiers, resolve them, and update the records in CGSpace:</li>
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</ul>
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<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;"><code class="language-console" data-lang="console"><span style="display:flex;"><span>$ cat dspace/config/controlled-vocabularies/cg-creator-identifier.xml 2022-09-22-add-orcids.csv| grep -oE <span style="color:#e6db74">'[A-Z0-9]{4}-[A-Z0-9]{4}-[A-Z0-9]{4}-[A-Z0-9]{4}'</span> | sort -u > /tmp/2023-06-06-orcids.txt
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</span></span><span style="display:flex;"><span>$ ./ilri/resolve_orcids.py -i /tmp/2023-06-06-orcids.txt -o /tmp/2023-06-06-orcids-names.txt -d
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</span></span><span style="display:flex;"><span>$ ./ilri/update_orcids.py -i /tmp/2023-06-06-orcids-names.txt -db dspacetest -u dspace -p <span style="color:#e6db74">'ffff'</span> -m <span style="color:#ae81ff">247</span>
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</span></span></code></pre></div><ul>
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<li>Start working on updating the MODS schema in CGSpace from 3.1 to 3.8 based on Stefano and Salem’s work last year</li>
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</ul>
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<!-- raw HTML omitted -->
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<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
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<meta property="og:type" content="website" />
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<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/" />
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<meta property="og:updated_time" content="2023-06-02T16:33:48+03:00" />
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<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
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<meta property="og:type" content="website" />
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<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/notes/" />
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<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
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<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
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<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
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<meta property="og:updated_time" content="2023-06-02T16:33:48+03:00" />
|
||||
<meta property="og:updated_time" content="2023-06-04T11:00:30+03:00" />
|
||||
|
||||
|
||||
|
||||
|
||||
@ -10,7 +10,7 @@
|
||||
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
|
||||
<meta property="og:type" content="website" />
|
||||
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" />
|
||||
<meta property="og:updated_time" content="2023-06-02T16:33:48+03:00" />
|
||||
<meta property="og:updated_time" content="2023-06-04T11:00:30+03:00" />
|
||||
|
||||
|
||||
|
||||
|
||||
@ -10,7 +10,7 @@
|
||||
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
|
||||
<meta property="og:type" content="website" />
|
||||
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" />
|
||||
<meta property="og:updated_time" content="2023-06-02T16:33:48+03:00" />
|
||||
<meta property="og:updated_time" content="2023-06-04T11:00:30+03:00" />
|
||||
|
||||
|
||||
|
||||
|
||||
@ -10,7 +10,7 @@
|
||||
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
|
||||
<meta property="og:type" content="website" />
|
||||
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" />
|
||||
<meta property="og:updated_time" content="2023-06-02T16:33:48+03:00" />
|
||||
<meta property="og:updated_time" content="2023-06-04T11:00:30+03:00" />
|
||||
|
||||
|
||||
|
||||
|
||||
@ -10,7 +10,7 @@
|
||||
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
|
||||
<meta property="og:type" content="website" />
|
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<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" />
|
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<meta property="og:updated_time" content="2023-06-02T16:33:48+03:00" />
|
||||
<meta property="og:updated_time" content="2023-06-04T11:00:30+03:00" />
|
||||
|
||||
|
||||
|
||||
|
||||
@ -10,7 +10,7 @@
|
||||
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
|
||||
<meta property="og:type" content="website" />
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<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" />
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<meta property="og:updated_time" content="2023-06-02T16:33:48+03:00" />
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||||
<meta property="og:updated_time" content="2023-06-04T11:00:30+03:00" />
|
||||
|
||||
|
||||
|
||||
|
||||
@ -3,19 +3,19 @@
|
||||
xmlns:xhtml="http://www.w3.org/1999/xhtml">
|
||||
<url>
|
||||
<loc>https://alanorth.github.io/cgspace-notes/categories/</loc>
|
||||
<lastmod>2023-06-02T16:33:48+03:00</lastmod>
|
||||
<lastmod>2023-06-04T11:00:30+03:00</lastmod>
|
||||
</url><url>
|
||||
<loc>https://alanorth.github.io/cgspace-notes/</loc>
|
||||
<lastmod>2023-06-02T16:33:48+03:00</lastmod>
|
||||
<lastmod>2023-06-04T11:00:30+03:00</lastmod>
|
||||
</url><url>
|
||||
<loc>https://alanorth.github.io/cgspace-notes/2023-06/</loc>
|
||||
<lastmod>2023-06-02T16:33:48+03:00</lastmod>
|
||||
<lastmod>2023-06-04T11:00:30+03:00</lastmod>
|
||||
</url><url>
|
||||
<loc>https://alanorth.github.io/cgspace-notes/categories/notes/</loc>
|
||||
<lastmod>2023-06-02T16:33:48+03:00</lastmod>
|
||||
<lastmod>2023-06-04T11:00:30+03:00</lastmod>
|
||||
</url><url>
|
||||
<loc>https://alanorth.github.io/cgspace-notes/posts/</loc>
|
||||
<lastmod>2023-06-02T16:33:48+03:00</lastmod>
|
||||
<lastmod>2023-06-04T11:00:30+03:00</lastmod>
|
||||
</url><url>
|
||||
<loc>https://alanorth.github.io/cgspace-notes/2023-05/</loc>
|
||||
<lastmod>2023-05-30T20:19:17+03:00</lastmod>
|
||||
|
||||
Loading…
Reference in New Issue
Block a user