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@ -25,11 +25,29 @@ categories: ["Notes"]
```
- In [2022-11]({{< relref "2022-11.md" >}}) an upstream Java update broke the DSpace 6 Handle server so we will have to pin this again after the upgrade to Ubuntu 22.04
- After the upgrade I made sure CGSpace was working, then proceeded to upgrade PostgreSQL from 12 to 14, like I did on DSpace Test in 2023-03
- After the upgrade I made sure CGSpace was working, then proceeded to upgrade PostgreSQL from 12 to 14, like I did on [DSpace Test in 2023-03]({{< relref "2023-03.md" >}})
- Then I had to downgrade OpenJDK to fix the Handle server using the ones I had previously downloaded for Ubuntu 20.04 because they no longer exist on Launchpad:
```console
# dpkg -i openjdk-8-j*8u342-b07*.deb
```
- Export CGSpace to fix missing Initiative collection mappings
- Start a harvest on AReS
- Work on the DSpace 7 migration a bit more
- I decided to rebase and drop all the submission form edits because they conflict every time upstream changes!
## 2023-06-06
- Fix some incorrect ORCID identifiers for an Alliance author on CGSpace
- Export our list of ORCID identifiers, resolve them, and update the records in CGSpace:
```console
$ cat dspace/config/controlled-vocabularies/cg-creator-identifier.xml 2022-09-22-add-orcids.csv| grep -oE '[A-Z0-9]{4}-[A-Z0-9]{4}-[A-Z0-9]{4}-[A-Z0-9]{4}' | sort -u > /tmp/2023-06-06-orcids.txt
$ ./ilri/resolve_orcids.py -i /tmp/2023-06-06-orcids.txt -o /tmp/2023-06-06-orcids-names.txt -d
$ ./ilri/update_orcids.py -i /tmp/2023-06-06-orcids-names.txt -db dspacetest -u dspace -p 'ffff' -m 247
```
- Start working on updating the MODS schema in CGSpace from 3.1 to 3.8 based on Stefano and Salem's work last year
<!-- vim: set sw=2 ts=2: -->

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<meta property="og:type" content="article" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/2023-06/" />
<meta property="article:published_time" content="2023-06-02T10:29:36+03:00" />
<meta property="article:modified_time" content="2023-06-02T16:33:48+03:00" />
<meta property="article:modified_time" content="2023-06-04T11:00:30+03:00" />
@ -54,9 +54,9 @@ From what I can see we need to upgrade the MODS schema from 3.1 to 3.7 and then
"@type": "BlogPosting",
"headline": "June, 2023",
"url": "https://alanorth.github.io/cgspace-notes/2023-06/",
"wordCount": "209",
"wordCount": "327",
"datePublished": "2023-06-02T10:29:36+03:00",
"dateModified": "2023-06-02T16:33:48+03:00",
"dateModified": "2023-06-04T11:00:30+03:00",
"author": {
"@type": "Person",
"name": "Alan Orth"
@ -155,11 +155,31 @@ From what I can see we need to upgrade the MODS schema from 3.1 to 3.7 and then
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;"><code class="language-console" data-lang="console"><span style="display:flex;"><span># apt-mark hold openjdk-8-jdk-headless:amd64 openjdk-8-jre-headless:amd64
</span></span></code></pre></div><ul>
<li>In <a href="/cgspace-notes/2022-11/">2022-11</a> an upstream Java update broke the DSpace 6 Handle server so we will have to pin this again after the upgrade to Ubuntu 22.04</li>
<li>After the upgrade I made sure CGSpace was working, then proceeded to upgrade PostgreSQL from 12 to 14, like I did on DSpace Test in 2023-03</li>
<li>After the upgrade I made sure CGSpace was working, then proceeded to upgrade PostgreSQL from 12 to 14, like I did on <a href="/cgspace-notes/2023-03/">DSpace Test in 2023-03</a></li>
<li>Then I had to downgrade OpenJDK to fix the Handle server using the ones I had previously downloaded for Ubuntu 20.04 because they no longer exist on Launchpad:</li>
</ul>
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;"><code class="language-console" data-lang="console"><span style="display:flex;"><span># dpkg -i openjdk-8-j*8u342-b07*.deb
</span></span></code></pre></div><!-- raw HTML omitted -->
</span></span></code></pre></div><ul>
<li>Export CGSpace to fix missing Initiative collection mappings</li>
<li>Start a harvest on AReS</li>
<li>Work on the DSpace 7 migration a bit more
<ul>
<li>I decided to rebase and drop all the submission form edits because they conflict every time upstream changes!</li>
</ul>
</li>
</ul>
<h2 id="2023-06-06">2023-06-06</h2>
<ul>
<li>Fix some incorrect ORCID identifiers for an Alliance author on CGSpace</li>
<li>Export our list of ORCID identifiers, resolve them, and update the records in CGSpace:</li>
</ul>
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;"><code class="language-console" data-lang="console"><span style="display:flex;"><span>$ cat dspace/config/controlled-vocabularies/cg-creator-identifier.xml 2022-09-22-add-orcids.csv| grep -oE <span style="color:#e6db74">&#39;[A-Z0-9]{4}-[A-Z0-9]{4}-[A-Z0-9]{4}-[A-Z0-9]{4}&#39;</span> | sort -u &gt; /tmp/2023-06-06-orcids.txt
</span></span><span style="display:flex;"><span>$ ./ilri/resolve_orcids.py -i /tmp/2023-06-06-orcids.txt -o /tmp/2023-06-06-orcids-names.txt -d
</span></span><span style="display:flex;"><span>$ ./ilri/update_orcids.py -i /tmp/2023-06-06-orcids-names.txt -db dspacetest -u dspace -p <span style="color:#e6db74">&#39;ffff&#39;</span> -m <span style="color:#ae81ff">247</span>
</span></span></code></pre></div><ul>
<li>Start working on updating the MODS schema in CGSpace from 3.1 to 3.8 based on Stefano and Salem&rsquo;s work last year</li>
</ul>
<!-- raw HTML omitted -->

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<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
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<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
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<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
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<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
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