From bda3cb4cd1d53cedbeb0fc4cdf4e3aa10da256e8 Mon Sep 17 00:00:00 2001 From: Alan Orth Date: Tue, 6 Jun 2023 16:54:25 +0300 Subject: [PATCH] Add notes for 2023-06-06 --- content/posts/2023-06.md | 20 ++++++++++++++++- docs/2023-06/index.html | 30 ++++++++++++++++++++----- docs/categories/index.html | 2 +- docs/categories/notes/index.html | 2 +- docs/categories/notes/page/2/index.html | 2 +- docs/categories/notes/page/3/index.html | 2 +- docs/categories/notes/page/4/index.html | 2 +- docs/categories/notes/page/5/index.html | 2 +- docs/categories/notes/page/6/index.html | 2 +- docs/categories/notes/page/7/index.html | 2 +- docs/categories/notes/page/8/index.html | 2 +- docs/index.html | 2 +- docs/page/10/index.html | 2 +- docs/page/2/index.html | 2 +- docs/page/3/index.html | 2 +- docs/page/4/index.html | 2 +- docs/page/5/index.html | 2 +- docs/page/6/index.html | 2 +- docs/page/7/index.html | 2 +- docs/page/8/index.html | 2 +- docs/page/9/index.html | 2 +- docs/posts/index.html | 2 +- docs/posts/page/10/index.html | 2 +- docs/posts/page/2/index.html | 2 +- docs/posts/page/3/index.html | 2 +- docs/posts/page/4/index.html | 2 +- docs/posts/page/5/index.html | 2 +- docs/posts/page/6/index.html | 2 +- docs/posts/page/7/index.html | 2 +- docs/posts/page/8/index.html | 2 +- docs/posts/page/9/index.html | 2 +- docs/sitemap.xml | 10 ++++----- 32 files changed, 78 insertions(+), 40 deletions(-) diff --git a/content/posts/2023-06.md b/content/posts/2023-06.md index adf29c148..72ef6d9f3 100644 --- a/content/posts/2023-06.md +++ b/content/posts/2023-06.md @@ -25,11 +25,29 @@ categories: ["Notes"] ``` - In [2022-11]({{< relref "2022-11.md" >}}) an upstream Java update broke the DSpace 6 Handle server so we will have to pin this again after the upgrade to Ubuntu 22.04 -- After the upgrade I made sure CGSpace was working, then proceeded to upgrade PostgreSQL from 12 to 14, like I did on DSpace Test in 2023-03 +- After the upgrade I made sure CGSpace was working, then proceeded to upgrade PostgreSQL from 12 to 14, like I did on [DSpace Test in 2023-03]({{< relref "2023-03.md" >}}) - Then I had to downgrade OpenJDK to fix the Handle server using the ones I had previously downloaded for Ubuntu 20.04 because they no longer exist on Launchpad: ```console # dpkg -i openjdk-8-j*8u342-b07*.deb ``` +- Export CGSpace to fix missing Initiative collection mappings +- Start a harvest on AReS +- Work on the DSpace 7 migration a bit more + - I decided to rebase and drop all the submission form edits because they conflict every time upstream changes! + +## 2023-06-06 + +- Fix some incorrect ORCID identifiers for an Alliance author on CGSpace +- Export our list of ORCID identifiers, resolve them, and update the records in CGSpace: + +```console +$ cat dspace/config/controlled-vocabularies/cg-creator-identifier.xml 2022-09-22-add-orcids.csv| grep -oE '[A-Z0-9]{4}-[A-Z0-9]{4}-[A-Z0-9]{4}-[A-Z0-9]{4}' | sort -u > /tmp/2023-06-06-orcids.txt +$ ./ilri/resolve_orcids.py -i /tmp/2023-06-06-orcids.txt -o /tmp/2023-06-06-orcids-names.txt -d +$ ./ilri/update_orcids.py -i /tmp/2023-06-06-orcids-names.txt -db dspacetest -u dspace -p 'ffff' -m 247 +``` + +- Start working on updating the MODS schema in CGSpace from 3.1 to 3.8 based on Stefano and Salem's work last year + diff --git a/docs/2023-06/index.html b/docs/2023-06/index.html index b613d1675..a668b2943 100644 --- a/docs/2023-06/index.html +++ b/docs/2023-06/index.html @@ -24,7 +24,7 @@ From what I can see we need to upgrade the MODS schema from 3.1 to 3.7 and then - + @@ -54,9 +54,9 @@ From what I can see we need to upgrade the MODS schema from 3.1 to 3.7 and then "@type": "BlogPosting", "headline": "June, 2023", "url": "https://alanorth.github.io/cgspace-notes/2023-06/", - "wordCount": "209", + "wordCount": "327", "datePublished": "2023-06-02T10:29:36+03:00", - "dateModified": "2023-06-02T16:33:48+03:00", + "dateModified": "2023-06-04T11:00:30+03:00", "author": { "@type": "Person", "name": "Alan Orth" @@ -155,11 +155,31 @@ From what I can see we need to upgrade the MODS schema from 3.1 to 3.7 and then 
# apt-mark hold openjdk-8-jdk-headless:amd64 openjdk-8-jre-headless:amd64
 
# dpkg -i openjdk-8-j*8u342-b07*.deb
-
+ +

2023-06-06

+ +
$ cat dspace/config/controlled-vocabularies/cg-creator-identifier.xml 2022-09-22-add-orcids.csv| grep -oE '[A-Z0-9]{4}-[A-Z0-9]{4}-[A-Z0-9]{4}-[A-Z0-9]{4}' | sort -u > /tmp/2023-06-06-orcids.txt
+$ ./ilri/resolve_orcids.py -i /tmp/2023-06-06-orcids.txt -o /tmp/2023-06-06-orcids-names.txt -d
+$ ./ilri/update_orcids.py -i /tmp/2023-06-06-orcids-names.txt -db dspacetest -u dspace -p 'ffff' -m 247
+
+ diff --git a/docs/categories/index.html b/docs/categories/index.html index d54a86c04..041b22974 100644 --- a/docs/categories/index.html +++ b/docs/categories/index.html @@ -10,7 +10,7 @@ - + diff --git a/docs/categories/notes/index.html b/docs/categories/notes/index.html index 567d48d50..f164ec1ac 100644 --- a/docs/categories/notes/index.html +++ b/docs/categories/notes/index.html @@ -10,7 +10,7 @@ - + diff --git a/docs/categories/notes/page/2/index.html b/docs/categories/notes/page/2/index.html index 975d06ffa..d79e09c07 100644 --- a/docs/categories/notes/page/2/index.html +++ b/docs/categories/notes/page/2/index.html @@ -10,7 +10,7 @@ - + diff --git a/docs/categories/notes/page/3/index.html b/docs/categories/notes/page/3/index.html index 0fec9b2fd..3a5dac78b 100644 --- a/docs/categories/notes/page/3/index.html +++ b/docs/categories/notes/page/3/index.html @@ -10,7 +10,7 @@ - + diff --git a/docs/categories/notes/page/4/index.html b/docs/categories/notes/page/4/index.html index f2c7ac00c..bb5b55ee4 100644 --- a/docs/categories/notes/page/4/index.html +++ b/docs/categories/notes/page/4/index.html @@ -10,7 +10,7 @@ - + diff --git a/docs/categories/notes/page/5/index.html b/docs/categories/notes/page/5/index.html index c353cacef..de428e100 100644 --- a/docs/categories/notes/page/5/index.html +++ b/docs/categories/notes/page/5/index.html @@ -10,7 +10,7 @@ - + diff --git a/docs/categories/notes/page/6/index.html b/docs/categories/notes/page/6/index.html index 690a8a349..f966bcf27 100644 --- a/docs/categories/notes/page/6/index.html +++ b/docs/categories/notes/page/6/index.html @@ -10,7 +10,7 @@ - + diff --git a/docs/categories/notes/page/7/index.html b/docs/categories/notes/page/7/index.html index 0c7f2ac08..814d40a62 100644 --- a/docs/categories/notes/page/7/index.html +++ b/docs/categories/notes/page/7/index.html @@ -10,7 +10,7 @@ - + diff --git a/docs/categories/notes/page/8/index.html b/docs/categories/notes/page/8/index.html index bad1ba52a..8b73d956a 100644 --- a/docs/categories/notes/page/8/index.html +++ b/docs/categories/notes/page/8/index.html @@ -10,7 +10,7 @@ - + diff --git a/docs/index.html b/docs/index.html index 7ec9918fc..761d6435f 100644 --- a/docs/index.html +++ b/docs/index.html @@ -10,7 +10,7 @@ - + diff --git a/docs/page/10/index.html b/docs/page/10/index.html index 5de958965..eb9caadd2 100644 --- a/docs/page/10/index.html +++ b/docs/page/10/index.html @@ -10,7 +10,7 @@ - + diff --git a/docs/page/2/index.html b/docs/page/2/index.html index 930899129..d47977e3c 100644 --- a/docs/page/2/index.html +++ b/docs/page/2/index.html @@ -10,7 +10,7 @@ - + diff --git a/docs/page/3/index.html b/docs/page/3/index.html index d98139896..7de13d242 100644 --- a/docs/page/3/index.html +++ b/docs/page/3/index.html @@ -10,7 +10,7 @@ - + diff --git a/docs/page/4/index.html b/docs/page/4/index.html index f2ee665c3..1cd65cca3 100644 --- a/docs/page/4/index.html +++ b/docs/page/4/index.html @@ -10,7 +10,7 @@ - + diff --git a/docs/page/5/index.html b/docs/page/5/index.html index f7495e02b..3a43cb6ef 100644 --- a/docs/page/5/index.html +++ b/docs/page/5/index.html @@ -10,7 +10,7 @@ - + diff --git a/docs/page/6/index.html b/docs/page/6/index.html index 549dbdcbd..c6eaf5bcb 100644 --- a/docs/page/6/index.html +++ b/docs/page/6/index.html @@ -10,7 +10,7 @@ - + diff --git a/docs/page/7/index.html b/docs/page/7/index.html index a9cc69344..262072ca9 100644 --- a/docs/page/7/index.html +++ b/docs/page/7/index.html @@ -10,7 +10,7 @@ - + diff --git a/docs/page/8/index.html b/docs/page/8/index.html index 1c2a632fd..a060dddab 100644 --- a/docs/page/8/index.html +++ b/docs/page/8/index.html @@ -10,7 +10,7 @@ - + diff --git a/docs/page/9/index.html b/docs/page/9/index.html index 739508a32..e05d407f3 100644 --- a/docs/page/9/index.html +++ b/docs/page/9/index.html @@ -10,7 +10,7 @@ - + diff --git a/docs/posts/index.html b/docs/posts/index.html index 85ac55e6e..a49f40b5d 100644 --- a/docs/posts/index.html +++ b/docs/posts/index.html @@ -10,7 +10,7 @@ - + diff --git a/docs/posts/page/10/index.html b/docs/posts/page/10/index.html index 719297db9..ba29e4335 100644 --- a/docs/posts/page/10/index.html +++ b/docs/posts/page/10/index.html @@ -10,7 +10,7 @@ - + diff --git a/docs/posts/page/2/index.html b/docs/posts/page/2/index.html index 63b3b5078..7b725316f 100644 --- a/docs/posts/page/2/index.html +++ b/docs/posts/page/2/index.html @@ -10,7 +10,7 @@ - + diff --git a/docs/posts/page/3/index.html b/docs/posts/page/3/index.html index 224177a29..143b19b45 100644 --- a/docs/posts/page/3/index.html +++ b/docs/posts/page/3/index.html @@ -10,7 +10,7 @@ - + diff --git a/docs/posts/page/4/index.html b/docs/posts/page/4/index.html index b1bff4b4d..4f0caa337 100644 --- a/docs/posts/page/4/index.html +++ b/docs/posts/page/4/index.html @@ -10,7 +10,7 @@ - + diff --git a/docs/posts/page/5/index.html b/docs/posts/page/5/index.html index c6a1d64af..6dfe247aa 100644 --- a/docs/posts/page/5/index.html +++ b/docs/posts/page/5/index.html @@ -10,7 +10,7 @@ - + diff --git a/docs/posts/page/6/index.html b/docs/posts/page/6/index.html index da095f9a4..58399710a 100644 --- a/docs/posts/page/6/index.html +++ b/docs/posts/page/6/index.html @@ -10,7 +10,7 @@ - + diff --git a/docs/posts/page/7/index.html b/docs/posts/page/7/index.html index d4ab325b3..478fd5a9c 100644 --- a/docs/posts/page/7/index.html +++ b/docs/posts/page/7/index.html @@ -10,7 +10,7 @@ - + diff --git a/docs/posts/page/8/index.html b/docs/posts/page/8/index.html index 67b5f803a..cd10bd8f3 100644 --- a/docs/posts/page/8/index.html +++ b/docs/posts/page/8/index.html @@ -10,7 +10,7 @@ - + diff --git a/docs/posts/page/9/index.html b/docs/posts/page/9/index.html index 1df168b7c..da7fcf46b 100644 --- a/docs/posts/page/9/index.html +++ b/docs/posts/page/9/index.html @@ -10,7 +10,7 @@ - + diff --git a/docs/sitemap.xml b/docs/sitemap.xml index 5a823146f..4d0f082eb 100644 --- a/docs/sitemap.xml +++ b/docs/sitemap.xml @@ -3,19 +3,19 @@ xmlns:xhtml="http://www.w3.org/1999/xhtml"> https://alanorth.github.io/cgspace-notes/categories/ - 2023-06-02T16:33:48+03:00 + 2023-06-04T11:00:30+03:00 https://alanorth.github.io/cgspace-notes/ - 2023-06-02T16:33:48+03:00 + 2023-06-04T11:00:30+03:00 https://alanorth.github.io/cgspace-notes/2023-06/ - 2023-06-02T16:33:48+03:00 + 2023-06-04T11:00:30+03:00 https://alanorth.github.io/cgspace-notes/categories/notes/ - 2023-06-02T16:33:48+03:00 + 2023-06-04T11:00:30+03:00 https://alanorth.github.io/cgspace-notes/posts/ - 2023-06-02T16:33:48+03:00 + 2023-06-04T11:00:30+03:00 https://alanorth.github.io/cgspace-notes/2023-05/ 2023-05-30T20:19:17+03:00