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42
content/posts/2020-07.md
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@ -857,4 +857,46 @@ Fixed 13 occurences of: Muloi, D.
Fixed 4 occurences of: Muloi, D.M.
```
## 2020-07-28
- I started analyzing the situation with the cases I've seen where a Solr record fails to be migrated:
- `id: 0-unmigrated` are mostly (all?) `type: 5` aka site view
- `id: -1-unmigrated` are mostly (all?) `type: 5` aka site view
- `id: -1` are mostly (all?) `type: 5` aka site view
- `id: 59184-unmigrated` where "59184" is the id of an item or bitstream that no longer exists
- Why doesn't Atmire's code ignore any id with "-unmigrated"?
- I sent feedback to Atmire since they had responded to my previous question yesterday
- They said that the DSpace 6 version of CUA does not work with Tomcat 8.5...
- I spent a few hours trying to write a [Jython-based curation task](https://wiki.lyrasis.org/display/DSDOC5x/Curation+tasks+in+Jython) to update ISO 3166-1 Alpha2 country codes based on each item's ISO 3166-1 country
- Peter doesn't want to use the ISO 3166-1 list because he objects to a few names, so I thought we might be able to use country codes or numeric codes and update the names with a curation task
- The work is very rough but kinda works: [mytask.py](https://gist.github.com/alanorth/6a31af592b3467f7b63ac8aea7c75d52)
- What is nice is that the `dso.update()` method updates the data the "DSpace way" so we don't need to re-index Solr
- I had a clever idea to "vendor" the pycountry code using `pip install pycountry -t`, but pycountry dropped support for Python 2 in 2019 so we can only use an outdated version
- In the end it's really limiting to this particular task in Jython because we are stuck with Python 2, we can't use virtual environments, and there is a lot of code we'd need to write to be able to handle the ISO 3166 country lists
- Python 2 is no longer supported by the Python community anyways so it's probably better to figure out how to do this in Java
## 2020-07-29
- The Atmire stats tool (com.atmire.statistics.util.update.atomic.AtomicStatisticsUpdateCLI) created 150GB of log files due to errors and the disk got full on DSpace Test (linode26)
- This morning I had noticed that the run I started last night said that 54,000,000 (54 million!) records failed to process, but the core only had 6 million or so documents to process...!
- I removed the large log files and optimized the Solr core
## 2020-07-30
- Looking into ISO 3166-1 from the iso-codes package
- I see that all current 249 countries have names, 173 have official names, and 6 have common names:
```
# grep -c numeric /usr/share/iso-codes/json/iso_3166-1.json
249
# grep -c -E '"name":' /usr/share/iso-codes/json/iso_3166-1.json
249
# grep -c -E '"official_name":' /usr/share/iso-codes/json/iso_3166-1.json
173
# grep -c -E '"common_name":' /usr/share/iso-codes/json/iso_3166-1.json
6
```
- Wow, the `CC-BY-NC-ND-3.0-IGO` license that I had [requested in 2019-02](https://github.com/spdx/license-list-XML/issues/767) was finally merged into SPDX...
<!-- vim: set sw=2 ts=2: -->

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@ -0,0 +1,21 @@
---
title: "August, 2020"
date: 2020-07-02T15:35:54+03:00
author: "Alan Orth"
categories: ["Notes"]
---
## 2020-08-02
- I spent a few days working on a Java-based curation task to tag items with ISO 3166-1 Alpha2 country codes based on their `cg.coverage.country` text values
- It looks up the names in ISO 3166-1 first, and then in our CGSpace countries mapping (which has five or so of Peter's preferred "display" country names)
- It implements a "force" mode too that will clear existing country codes and re-tag everything
- It is class based so I can easily add support for other vocabularies, and the technique could even be used for organizations with mappings to ROR and Clarisa...
<!--more-->
- The code is currently on my personal GitHub: https://github.com/alanorth/dspace-curation-tasks
- I still need to figure out how to integrate this with the DSpace build because currently you have to package it and copy the JAR to the `dspace/lib` directory (not to mention the config)
<!-- vim: set sw=2 ts=2: -->

6
docs/2015-11/index.html
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@ -31,7 +31,7 @@ Last week I had increased the limit from 30 to 60, which seemed to help, but now
$ psql -c &#39;SELECT * from pg_stat_activity;&#39; | grep idle | grep -c cgspace
78
"/>
<meta name="generator" content="Hugo 0.73.0" />
<meta name="generator" content="Hugo 0.74.1" />
@ -239,6 +239,8 @@ db.statementpool = true
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-07/">August, 2020</a></li>
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
<li><a href="/cgspace-notes/2020-06/">June, 2020</a></li>
@ -247,8 +249,6 @@ db.statementpool = true
<li><a href="/cgspace-notes/2020-04/">April, 2020</a></li>
<li><a href="/cgspace-notes/2020-03/">March, 2020</a></li>
</ol>
</section>

6
docs/2015-12/index.html
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@ -33,7 +33,7 @@ Replace lzop with xz in log compression cron jobs on DSpace Test—it uses less
-rw-rw-r-- 1 tomcat7 tomcat7 387K Nov 18 23:59 dspace.log.2015-11-18.lzo
-rw-rw-r-- 1 tomcat7 tomcat7 169K Nov 18 23:59 dspace.log.2015-11-18.xz
"/>
<meta name="generator" content="Hugo 0.73.0" />
<meta name="generator" content="Hugo 0.74.1" />
@ -261,6 +261,8 @@ $ curl -o /dev/null -s -w %{time_total}\\n https://cgspace.cgiar.org/rest/handle
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-07/">August, 2020</a></li>
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
<li><a href="/cgspace-notes/2020-06/">June, 2020</a></li>
@ -269,8 +271,6 @@ $ curl -o /dev/null -s -w %{time_total}\\n https://cgspace.cgiar.org/rest/handle
<li><a href="/cgspace-notes/2020-04/">April, 2020</a></li>
<li><a href="/cgspace-notes/2020-03/">March, 2020</a></li>
</ol>
</section>

6
docs/2016-01/index.html
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@ -25,7 +25,7 @@ Move ILRI collection 10568/12503 from 10568/27869 to 10568/27629 using the move_
I realized it is only necessary to clear the Cocoon cache after moving collections—rather than reindexing—as no metadata has changed, and therefore no search or browse indexes need to be updated.
Update GitHub wiki for documentation of maintenance tasks.
"/>
<meta name="generator" content="Hugo 0.73.0" />
<meta name="generator" content="Hugo 0.74.1" />
@ -197,6 +197,8 @@ $ find SimpleArchiveForBio/ -iname &ldquo;*.pdf&rdquo; -exec basename {} ; | sor
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-07/">August, 2020</a></li>
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
<li><a href="/cgspace-notes/2020-06/">June, 2020</a></li>
@ -205,8 +207,6 @@ $ find SimpleArchiveForBio/ -iname &ldquo;*.pdf&rdquo; -exec basename {} ; | sor
<li><a href="/cgspace-notes/2020-04/">April, 2020</a></li>
<li><a href="/cgspace-notes/2020-03/">March, 2020</a></li>
</ol>
</section>

6
docs/2016-02/index.html
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@ -35,7 +35,7 @@ I noticed we have a very interesting list of countries on CGSpace:
Not only are there 49,000 countries, we have some blanks (25)&hellip;
Also, lots of things like &ldquo;COTE D`LVOIRE&rdquo; and &ldquo;COTE D IVOIRE&rdquo;
"/>
<meta name="generator" content="Hugo 0.73.0" />
<meta name="generator" content="Hugo 0.74.1" />
@ -375,6 +375,8 @@ Bitstream: tést señora alimentación.pdf
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-07/">August, 2020</a></li>
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
<li><a href="/cgspace-notes/2020-06/">June, 2020</a></li>
@ -383,8 +385,6 @@ Bitstream: tést señora alimentación.pdf
<li><a href="/cgspace-notes/2020-04/">April, 2020</a></li>
<li><a href="/cgspace-notes/2020-03/">March, 2020</a></li>
</ol>
</section>

6
docs/2016-03/index.html
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@ -25,7 +25,7 @@ Looking at issues with author authorities on CGSpace
For some reason we still have the index-lucene-update cron job active on CGSpace, but I&rsquo;m pretty sure we don&rsquo;t need it as of the latest few versions of Atmire&rsquo;s Listings and Reports module
Reinstall my local (Mac OS X) DSpace stack with Tomcat 7, PostgreSQL 9.3, and Java JDK 1.7 to match environment on CGSpace server
"/>
<meta name="generator" content="Hugo 0.73.0" />
<meta name="generator" content="Hugo 0.74.1" />
@ -313,6 +313,8 @@ Reinstall my local (Mac OS X) DSpace stack with Tomcat 7, PostgreSQL 9.3, and Ja
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-07/">August, 2020</a></li>
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
<li><a href="/cgspace-notes/2020-06/">June, 2020</a></li>
@ -321,8 +323,6 @@ Reinstall my local (Mac OS X) DSpace stack with Tomcat 7, PostgreSQL 9.3, and Ja
<li><a href="/cgspace-notes/2020-04/">April, 2020</a></li>
<li><a href="/cgspace-notes/2020-03/">March, 2020</a></li>
</ol>
</section>

6
docs/2016-04/index.html
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@ -29,7 +29,7 @@ After running DSpace for over five years I&rsquo;ve never needed to look in any
This will save us a few gigs of backup space we&rsquo;re paying for on S3
Also, I noticed the checker log has some errors we should pay attention to:
"/>
<meta name="generator" content="Hugo 0.73.0" />
<meta name="generator" content="Hugo 0.74.1" />
@ -492,6 +492,8 @@ dspace.log.2016-04-27:7271
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-07/">August, 2020</a></li>
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
<li><a href="/cgspace-notes/2020-06/">June, 2020</a></li>
@ -500,8 +502,6 @@ dspace.log.2016-04-27:7271
<li><a href="/cgspace-notes/2020-04/">April, 2020</a></li>
<li><a href="/cgspace-notes/2020-03/">March, 2020</a></li>
</ol>
</section>

6
docs/2016-05/index.html
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@ -31,7 +31,7 @@ There are 3,000 IPs accessing the REST API in a 24-hour period!
# awk &#39;{print $1}&#39; /var/log/nginx/rest.log | uniq | wc -l
3168
"/>
<meta name="generator" content="Hugo 0.73.0" />
<meta name="generator" content="Hugo 0.74.1" />
@ -368,6 +368,8 @@ sys 0m20.540s
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-07/">August, 2020</a></li>
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
<li><a href="/cgspace-notes/2020-06/">June, 2020</a></li>
@ -376,8 +378,6 @@ sys 0m20.540s
<li><a href="/cgspace-notes/2020-04/">April, 2020</a></li>
<li><a href="/cgspace-notes/2020-03/">March, 2020</a></li>
</ol>
</section>

6
docs/2016-06/index.html
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@ -31,7 +31,7 @@ This is their publications set: http://ebrary.ifpri.org/oai/oai.php?verb=ListRec
You can see the others by using the OAI ListSets verb: http://ebrary.ifpri.org/oai/oai.php?verb=ListSets
Working on second phase of metadata migration, looks like this will work for moving CPWF-specific data in dc.identifier.fund to cg.identifier.cpwfproject and then the rest to dc.description.sponsorship
"/>
<meta name="generator" content="Hugo 0.73.0" />
<meta name="generator" content="Hugo 0.74.1" />
@ -406,6 +406,8 @@ $ ./delete-metadata-values.py -f dc.contributor.corporate -i Corporate-Authors-D
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-07/">August, 2020</a></li>
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
<li><a href="/cgspace-notes/2020-06/">June, 2020</a></li>
@ -414,8 +416,6 @@ $ ./delete-metadata-values.py -f dc.contributor.corporate -i Corporate-Authors-D
<li><a href="/cgspace-notes/2020-04/">April, 2020</a></li>
<li><a href="/cgspace-notes/2020-03/">March, 2020</a></li>
</ol>
</section>

6
docs/2016-07/index.html
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@ -41,7 +41,7 @@ dspacetest=# select text_value from metadatavalue where metadata_field_id=3 and
In this case the select query was showing 95 results before the update
"/>
<meta name="generator" content="Hugo 0.73.0" />
<meta name="generator" content="Hugo 0.74.1" />
@ -322,6 +322,8 @@ discovery.index.authority.ignore-variants=true
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-07/">August, 2020</a></li>
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
<li><a href="/cgspace-notes/2020-06/">June, 2020</a></li>
@ -330,8 +332,6 @@ discovery.index.authority.ignore-variants=true
<li><a href="/cgspace-notes/2020-04/">April, 2020</a></li>
<li><a href="/cgspace-notes/2020-03/">March, 2020</a></li>
</ol>
</section>

6
docs/2016-08/index.html
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@ -39,7 +39,7 @@ $ git checkout -b 55new 5_x-prod
$ git reset --hard ilri/5_x-prod
$ git rebase -i dspace-5.5
"/>
<meta name="generator" content="Hugo 0.73.0" />
<meta name="generator" content="Hugo 0.74.1" />
@ -386,6 +386,8 @@ $ JAVA_OPTS=&quot;-Dfile.encoding=UTF-8 -Xmx512m&quot; /home/cgspace.cgiar.org/b
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-07/">August, 2020</a></li>
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
<li><a href="/cgspace-notes/2020-06/">June, 2020</a></li>
@ -394,8 +396,6 @@ $ JAVA_OPTS=&quot;-Dfile.encoding=UTF-8 -Xmx512m&quot; /home/cgspace.cgiar.org/b
<li><a href="/cgspace-notes/2020-04/">April, 2020</a></li>
<li><a href="/cgspace-notes/2020-03/">March, 2020</a></li>
</ol>
</section>

6
docs/2016-09/index.html
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@ -31,7 +31,7 @@ It looks like we might be able to use OUs now, instead of DCs:
$ ldapsearch -x -H ldaps://svcgroot2.cgiarad.org:3269/ -b &quot;dc=cgiarad,dc=org&quot; -D &quot;admigration1@cgiarad.org&quot; -W &quot;(sAMAccountName=admigration1)&quot;
"/>
<meta name="generator" content="Hugo 0.73.0" />
<meta name="generator" content="Hugo 0.74.1" />
@ -603,6 +603,8 @@ $ ./delete-metadata-values.py -i ilrisubjects-delete-13.csv -f cg.subject.ilri -
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-07/">August, 2020</a></li>
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
<li><a href="/cgspace-notes/2020-06/">June, 2020</a></li>
@ -611,8 +613,6 @@ $ ./delete-metadata-values.py -i ilrisubjects-delete-13.csv -f cg.subject.ilri -
<li><a href="/cgspace-notes/2020-04/">April, 2020</a></li>
<li><a href="/cgspace-notes/2020-03/">March, 2020</a></li>
</ol>
</section>

6
docs/2016-10/index.html
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@ -39,7 +39,7 @@ I exported a random item&rsquo;s metadata as CSV, deleted all columns except id
0000-0002-6115-0956||0000-0002-3812-8793||0000-0001-7462-405X
"/>
<meta name="generator" content="Hugo 0.73.0" />
<meta name="generator" content="Hugo 0.74.1" />
@ -369,6 +369,8 @@ dspace=# update metadatavalue set text_value = regexp_replace(text_value, 'http:
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-07/">August, 2020</a></li>
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
<li><a href="/cgspace-notes/2020-06/">June, 2020</a></li>
@ -377,8 +379,6 @@ dspace=# update metadatavalue set text_value = regexp_replace(text_value, 'http:
<li><a href="/cgspace-notes/2020-04/">April, 2020</a></li>
<li><a href="/cgspace-notes/2020-03/">March, 2020</a></li>
</ol>
</section>

6
docs/2016-11/index.html
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@ -23,7 +23,7 @@ Add dc.type to the output options for Atmire&rsquo;s Listings and Reports module
Add dc.type to the output options for Atmire&rsquo;s Listings and Reports module (#286)
"/>
<meta name="generator" content="Hugo 0.73.0" />
<meta name="generator" content="Hugo 0.74.1" />
@ -545,6 +545,8 @@ org.dspace.discovery.SearchServiceException: Error executing query
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-07/">August, 2020</a></li>
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
<li><a href="/cgspace-notes/2020-06/">June, 2020</a></li>
@ -553,8 +555,6 @@ org.dspace.discovery.SearchServiceException: Error executing query
<li><a href="/cgspace-notes/2020-04/">April, 2020</a></li>
<li><a href="/cgspace-notes/2020-03/">March, 2020</a></li>
</ol>
</section>

6
docs/2016-12/index.html
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@ -43,7 +43,7 @@ I see thousands of them in the logs for the last few months, so it&rsquo;s not r
I&rsquo;ve raised a ticket with Atmire to ask
Another worrying error from dspace.log is:
"/>
<meta name="generator" content="Hugo 0.73.0" />
<meta name="generator" content="Hugo 0.74.1" />
@ -781,6 +781,8 @@ $ exit
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-07/">August, 2020</a></li>
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
<li><a href="/cgspace-notes/2020-06/">June, 2020</a></li>
@ -789,8 +791,6 @@ $ exit
<li><a href="/cgspace-notes/2020-04/">April, 2020</a></li>
<li><a href="/cgspace-notes/2020-03/">March, 2020</a></li>
</ol>
</section>

6
docs/2017-01/index.html
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@ -25,7 +25,7 @@ I checked to see if the Solr sharding task that is supposed to run on January 1s
I tested on DSpace Test as well and it doesn&rsquo;t work there either
I asked on the dspace-tech mailing list because it seems to be broken, and actually now I&rsquo;m not sure if we&rsquo;ve ever had the sharding task run successfully over all these years
"/>
<meta name="generator" content="Hugo 0.73.0" />
<meta name="generator" content="Hugo 0.74.1" />
@ -366,6 +366,8 @@ $ gs -sDEVICE=pdfwrite -dCompatibilityLevel=1.4 -dPDFSETTINGS=/ebook -dNOPAUSE -
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-07/">August, 2020</a></li>
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
<li><a href="/cgspace-notes/2020-06/">June, 2020</a></li>
@ -374,8 +376,6 @@ $ gs -sDEVICE=pdfwrite -dCompatibilityLevel=1.4 -dPDFSETTINGS=/ebook -dNOPAUSE -
<li><a href="/cgspace-notes/2020-04/">April, 2020</a></li>
<li><a href="/cgspace-notes/2020-03/">March, 2020</a></li>
</ol>
</section>

6
docs/2017-02/index.html
View File

@ -47,7 +47,7 @@ DELETE 1
Create issue on GitHub to track the addition of CCAFS Phase II project tags (#301)
Looks like we&rsquo;ll be using cg.identifier.ccafsprojectpii as the field name
"/>
<meta name="generator" content="Hugo 0.73.0" />
<meta name="generator" content="Hugo 0.74.1" />
@ -421,6 +421,8 @@ COPY 1968
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-07/">August, 2020</a></li>
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
<li><a href="/cgspace-notes/2020-06/">June, 2020</a></li>
@ -429,8 +431,6 @@ COPY 1968
<li><a href="/cgspace-notes/2020-04/">April, 2020</a></li>
<li><a href="/cgspace-notes/2020-03/">March, 2020</a></li>
</ol>
</section>

6
docs/2017-03/index.html
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@ -51,7 +51,7 @@ Interestingly, it seems DSpace 4.x&rsquo;s thumbnails were sRGB, but forcing reg
$ identify ~/Desktop/alc_contrastes_desafios.jpg
/Users/aorth/Desktop/alc_contrastes_desafios.jpg JPEG 464x600 464x600&#43;0&#43;0 8-bit CMYK 168KB 0.000u 0:00.000
"/>
<meta name="generator" content="Hugo 0.73.0" />
<meta name="generator" content="Hugo 0.74.1" />
@ -352,6 +352,8 @@ $ ./delete-metadata-values.py -i Investors-Delete-121.csv -f dc.description.spon
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-07/">August, 2020</a></li>
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
<li><a href="/cgspace-notes/2020-06/">June, 2020</a></li>
@ -360,8 +362,6 @@ $ ./delete-metadata-values.py -i Investors-Delete-121.csv -f dc.description.spon
<li><a href="/cgspace-notes/2020-04/">April, 2020</a></li>
<li><a href="/cgspace-notes/2020-03/">March, 2020</a></li>
</ol>
</section>

6
docs/2017-04/index.html
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@ -37,7 +37,7 @@ Testing the CMYK patch on a collection with 650 items:
$ [dspace]/bin/dspace filter-media -f -i 10568/16498 -p &quot;ImageMagick PDF Thumbnail&quot; -v &gt;&amp; /tmp/filter-media-cmyk.txt
"/>
<meta name="generator" content="Hugo 0.73.0" />
<meta name="generator" content="Hugo 0.74.1" />
@ -582,6 +582,8 @@ $ gem install compass -v 1.0.3
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-07/">August, 2020</a></li>
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
<li><a href="/cgspace-notes/2020-06/">June, 2020</a></li>
@ -590,8 +592,6 @@ $ gem install compass -v 1.0.3
<li><a href="/cgspace-notes/2020-04/">April, 2020</a></li>
<li><a href="/cgspace-notes/2020-03/">March, 2020</a></li>
</ol>
</section>

6
docs/2017-05/index.html
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@ -15,7 +15,7 @@
<meta name="twitter:card" content="summary"/>
<meta name="twitter:title" content="May, 2017"/>
<meta name="twitter:description" content="2017-05-01 ICARDA apparently started working on CG Core on their MEL repository They have done a few cg.* fields, but not very consistent and even copy some of CGSpace items: https://mel.cgiar.org/xmlui/handle/20.500.11766/6911?show=full https://cgspace.cgiar.org/handle/10568/73683 2017-05-02 Atmire got back about the Workflow Statistics issue, and apparently it&rsquo;s a bug in the CUA module so they will send us a pull request 2017-05-04 Sync DSpace Test with database and assetstore from CGSpace Re-deploy DSpace Test with Atmire&rsquo;s CUA patch for workflow statistics, run system updates, and restart the server Now I can see the workflow statistics and am able to select users, but everything returns 0 items Megan says there are still some mapped items are not appearing since last week, so I forced a full index-discovery -b Need to remember to check if the collection has more items (currently 39 on CGSpace, but 118 on the freshly reindexed DSPace Test) tomorrow: https://cgspace."/>
<meta name="generator" content="Hugo 0.73.0" />
<meta name="generator" content="Hugo 0.74.1" />
@ -388,6 +388,8 @@ UPDATE 187
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-07/">August, 2020</a></li>
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
<li><a href="/cgspace-notes/2020-06/">June, 2020</a></li>
@ -396,8 +398,6 @@ UPDATE 187
<li><a href="/cgspace-notes/2020-04/">April, 2020</a></li>
<li><a href="/cgspace-notes/2020-03/">March, 2020</a></li>
</ol>
</section>

6
docs/2017-06/index.html
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@ -15,7 +15,7 @@
<meta name="twitter:card" content="summary"/>
<meta name="twitter:title" content="June, 2017"/>
<meta name="twitter:description" content="2017-06-01 After discussion with WLE and CGSpace content people, we decided to just add one metadata field for the WLE Research Themes The cg.identifier.wletheme field will be used for both Phase I and Phase II Research Themes Then we&rsquo;ll create a new sub-community for Phase II and create collections for the research themes there The current &ldquo;Research Themes&rdquo; community will be renamed to &ldquo;WLE Phase I Research Themes&rdquo; Tagged all items in the current Phase I collections with their appropriate themes Create pull request to add Phase II research themes to the submission form: #328 Add cg."/>
<meta name="generator" content="Hugo 0.73.0" />
<meta name="generator" content="Hugo 0.74.1" />
@ -267,6 +267,8 @@ $ JAVA_OPTS=&quot;-Xmx1024m -Dfile.encoding=UTF-8&quot; [dspace]/bin/dspace impo
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-07/">August, 2020</a></li>
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
<li><a href="/cgspace-notes/2020-06/">June, 2020</a></li>
@ -275,8 +277,6 @@ $ JAVA_OPTS=&quot;-Xmx1024m -Dfile.encoding=UTF-8&quot; [dspace]/bin/dspace impo
<li><a href="/cgspace-notes/2020-04/">April, 2020</a></li>
<li><a href="/cgspace-notes/2020-03/">March, 2020</a></li>
</ol>
</section>

6
docs/2017-07/index.html
View File

@ -33,7 +33,7 @@ Merge changes for WLE Phase II theme rename (#329)
Looking at extracting the metadata registries from ICARDA&rsquo;s MEL DSpace database so we can compare fields with CGSpace
We can use PostgreSQL&rsquo;s extended output format (-x) plus sed to format the output into quasi XML:
"/>
<meta name="generator" content="Hugo 0.73.0" />
<meta name="generator" content="Hugo 0.74.1" />
@ -272,6 +272,8 @@ delete from metadatavalue where resource_type_id=2 and metadata_field_id=235 and
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-07/">August, 2020</a></li>
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
<li><a href="/cgspace-notes/2020-06/">June, 2020</a></li>
@ -280,8 +282,6 @@ delete from metadatavalue where resource_type_id=2 and metadata_field_id=235 and
<li><a href="/cgspace-notes/2020-04/">April, 2020</a></li>
<li><a href="/cgspace-notes/2020-03/">March, 2020</a></li>
</ol>
</section>

6
docs/2017-08/index.html
View File

@ -57,7 +57,7 @@ This was due to newline characters in the dc.description.abstract column, which
I exported a new CSV from the collection on DSpace Test and then manually removed the characters in vim using g/^$/d
Then I cleaned up the author authorities and HTML characters in OpenRefine and sent the file back to Abenet
"/>
<meta name="generator" content="Hugo 0.73.0" />
<meta name="generator" content="Hugo 0.74.1" />
@ -514,6 +514,8 @@ org.apache.commons.dbcp.SQLNestedException: Cannot get a connection, pool error
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-07/">August, 2020</a></li>
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
<li><a href="/cgspace-notes/2020-06/">June, 2020</a></li>
@ -522,8 +524,6 @@ org.apache.commons.dbcp.SQLNestedException: Cannot get a connection, pool error
<li><a href="/cgspace-notes/2020-04/">April, 2020</a></li>
<li><a href="/cgspace-notes/2020-03/">March, 2020</a></li>
</ol>
</section>

6
docs/2017-09/index.html
View File

@ -29,7 +29,7 @@ Linode sent an alert that CGSpace (linode18) was using 261% CPU for the past two
Ask Sisay to clean up the WLE approvers a bit, as Marianne&rsquo;s user account is both in the approvers step as well as the group
"/>
<meta name="generator" content="Hugo 0.73.0" />
<meta name="generator" content="Hugo 0.74.1" />
@ -656,6 +656,8 @@ Cert Status: good
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-07/">August, 2020</a></li>
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
<li><a href="/cgspace-notes/2020-06/">June, 2020</a></li>
@ -664,8 +666,6 @@ Cert Status: good
<li><a href="/cgspace-notes/2020-04/">April, 2020</a></li>
<li><a href="/cgspace-notes/2020-03/">March, 2020</a></li>
</ol>
</section>

6
docs/2017-10/index.html
View File

@ -31,7 +31,7 @@ http://hdl.handle.net/10568/78495||http://hdl.handle.net/10568/79336
There appears to be a pattern but I&rsquo;ll have to look a bit closer and try to clean them up automatically, either in SQL or in OpenRefine
Add Katherine Lutz to the groups for content submission and edit steps of the CGIAR System collections
"/>
<meta name="generator" content="Hugo 0.73.0" />
<meta name="generator" content="Hugo 0.74.1" />
@ -440,6 +440,8 @@ session_id=6C30F10B4351A4ED83EC6ED50AFD6B6A
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-07/">August, 2020</a></li>
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
<li><a href="/cgspace-notes/2020-06/">June, 2020</a></li>
@ -448,8 +450,6 @@ session_id=6C30F10B4351A4ED83EC6ED50AFD6B6A
<li><a href="/cgspace-notes/2020-04/">April, 2020</a></li>
<li><a href="/cgspace-notes/2020-03/">March, 2020</a></li>
</ol>
</section>

6
docs/2017-11/index.html
View File

@ -45,7 +45,7 @@ Generate list of authors on CGSpace for Peter to go through and correct:
dspace=# \copy (select distinct text_value, count(*) as count from metadatavalue where metadata_field_id = (select metadata_field_id from metadatafieldregistry where element = &#39;contributor&#39; and qualifier = &#39;author&#39;) AND resource_type_id = 2 group by text_value order by count desc) to /tmp/authors.csv with csv;
COPY 54701
"/>
<meta name="generator" content="Hugo 0.73.0" />
<meta name="generator" content="Hugo 0.74.1" />
@ -941,6 +941,8 @@ $ cat dspace.log.2017-11-28 | grep -o -E 'session_id=[A-Z0-9]{32}' | sort -n | u
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-07/">August, 2020</a></li>
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
<li><a href="/cgspace-notes/2020-06/">June, 2020</a></li>
@ -949,8 +951,6 @@ $ cat dspace.log.2017-11-28 | grep -o -E 'session_id=[A-Z0-9]{32}' | sort -n | u
<li><a href="/cgspace-notes/2020-04/">April, 2020</a></li>
<li><a href="/cgspace-notes/2020-03/">March, 2020</a></li>
</ol>
</section>

6
docs/2017-12/index.html
View File

@ -27,7 +27,7 @@ The logs say &ldquo;Timeout waiting for idle object&rdquo;
PostgreSQL activity says there are 115 connections currently
The list of connections to XMLUI and REST API for today:
"/>
<meta name="generator" content="Hugo 0.73.0" />
<meta name="generator" content="Hugo 0.74.1" />
@ -780,6 +780,8 @@ DELETE 20
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-07/">August, 2020</a></li>
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
<li><a href="/cgspace-notes/2020-06/">June, 2020</a></li>
@ -788,8 +790,6 @@ DELETE 20
<li><a href="/cgspace-notes/2020-04/">April, 2020</a></li>
<li><a href="/cgspace-notes/2020-03/">March, 2020</a></li>
</ol>
</section>

6
docs/2018-01/index.html
View File

@ -147,7 +147,7 @@ dspace.log.2018-01-02:34
Danny wrote to ask for help renewing the wildcard ilri.org certificate and I advised that we should probably use Let&rsquo;s Encrypt if it&rsquo;s just a handful of domains
"/>
<meta name="generator" content="Hugo 0.73.0" />
<meta name="generator" content="Hugo 0.74.1" />
@ -1449,6 +1449,8 @@ Catalina:type=Manager,context=/,host=localhost activeSessions 8
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-07/">August, 2020</a></li>
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
<li><a href="/cgspace-notes/2020-06/">June, 2020</a></li>
@ -1457,8 +1459,6 @@ Catalina:type=Manager,context=/,host=localhost activeSessions 8
<li><a href="/cgspace-notes/2020-04/">April, 2020</a></li>
<li><a href="/cgspace-notes/2020-03/">March, 2020</a></li>
</ol>
</section>

6
docs/2018-02/index.html
View File

@ -27,7 +27,7 @@ We don&rsquo;t need to distinguish between internal and external works, so that
Yesterday I figured out how to monitor DSpace sessions using JMX
I copied the logic in the jmx_tomcat_dbpools provided by Ubuntu&rsquo;s munin-plugins-java package and used the stuff I discovered about JMX in 2018-01
"/>
<meta name="generator" content="Hugo 0.73.0" />
<meta name="generator" content="Hugo 0.74.1" />
@ -1036,6 +1036,8 @@ UPDATE 3
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-07/">August, 2020</a></li>
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
<li><a href="/cgspace-notes/2020-06/">June, 2020</a></li>
@ -1044,8 +1046,6 @@ UPDATE 3
<li><a href="/cgspace-notes/2020-04/">April, 2020</a></li>
<li><a href="/cgspace-notes/2020-03/">March, 2020</a></li>
</ol>
</section>

6
docs/2018-03/index.html
View File

@ -21,7 +21,7 @@ Export a CSV of the IITA community metadata for Martin Mueller
Export a CSV of the IITA community metadata for Martin Mueller
"/>
<meta name="generator" content="Hugo 0.73.0" />
<meta name="generator" content="Hugo 0.74.1" />
@ -582,6 +582,8 @@ Fixed 5 occurences of: GENEBANKS
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-07/">August, 2020</a></li>
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
<li><a href="/cgspace-notes/2020-06/">June, 2020</a></li>
@ -590,8 +592,6 @@ Fixed 5 occurences of: GENEBANKS
<li><a href="/cgspace-notes/2020-04/">April, 2020</a></li>
<li><a href="/cgspace-notes/2020-03/">March, 2020</a></li>
</ol>
</section>

6
docs/2018-04/index.html
View File

@ -23,7 +23,7 @@ Catalina logs at least show some memory errors yesterday:
I tried to test something on DSpace Test but noticed that it&rsquo;s down since god knows when
Catalina logs at least show some memory errors yesterday:
"/>
<meta name="generator" content="Hugo 0.73.0" />
<meta name="generator" content="Hugo 0.74.1" />
@ -591,6 +591,8 @@ $ pg_restore -O -U dspacetest -d dspacetest -W -h localhost /tmp/dspace_2018-04-
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-07/">August, 2020</a></li>
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
<li><a href="/cgspace-notes/2020-06/">June, 2020</a></li>
@ -599,8 +601,6 @@ $ pg_restore -O -U dspacetest -d dspacetest -W -h localhost /tmp/dspace_2018-04-
<li><a href="/cgspace-notes/2020-04/">April, 2020</a></li>
<li><a href="/cgspace-notes/2020-03/">March, 2020</a></li>
</ol>
</section>

6
docs/2018-05/index.html
View File

@ -35,7 +35,7 @@ http://localhost:3000/solr/statistics/update?stream.body=%3Ccommit/%3E
Then I reduced the JVM heap size from 6144 back to 5120m
Also, I switched it to use OpenJDK instead of Oracle Java, as well as re-worked the Ansible infrastructure scripts to support hosts choosing which distribution they want to use
"/>
<meta name="generator" content="Hugo 0.73.0" />
<meta name="generator" content="Hugo 0.74.1" />
@ -520,6 +520,8 @@ $ psql -h localhost -U postgres dspacetest
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-07/">August, 2020</a></li>
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
<li><a href="/cgspace-notes/2020-06/">June, 2020</a></li>
@ -528,8 +530,6 @@ $ psql -h localhost -U postgres dspacetest
<li><a href="/cgspace-notes/2020-04/">April, 2020</a></li>
<li><a href="/cgspace-notes/2020-03/">March, 2020</a></li>
</ol>
</section>

6
docs/2018-06/index.html
View File

@ -55,7 +55,7 @@ real 74m42.646s
user 8m5.056s
sys 2m7.289s
"/>
<meta name="generator" content="Hugo 0.73.0" />
<meta name="generator" content="Hugo 0.74.1" />
@ -514,6 +514,8 @@ $ sed '/^id/d' 10568-*.csv | csvcut -c 1,2 &gt; map-to-cifor-archive.csv
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-07/">August, 2020</a></li>
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
<li><a href="/cgspace-notes/2020-06/">June, 2020</a></li>
@ -522,8 +524,6 @@ $ sed '/^id/d' 10568-*.csv | csvcut -c 1,2 &gt; map-to-cifor-archive.csv
<li><a href="/cgspace-notes/2020-04/">April, 2020</a></li>
<li><a href="/cgspace-notes/2020-03/">March, 2020</a></li>
</ol>
</section>

6
docs/2018-07/index.html
View File

@ -33,7 +33,7 @@ During the mvn package stage on the 5.8 branch I kept getting issues with java r
There is insufficient memory for the Java Runtime Environment to continue.
"/>
<meta name="generator" content="Hugo 0.73.0" />
<meta name="generator" content="Hugo 0.74.1" />
@ -566,6 +566,8 @@ dspace=# select count(text_value) from metadatavalue where resource_type_id=2 an
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-07/">August, 2020</a></li>
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
<li><a href="/cgspace-notes/2020-06/">June, 2020</a></li>
@ -574,8 +576,6 @@ dspace=# select count(text_value) from metadatavalue where resource_type_id=2 an
<li><a href="/cgspace-notes/2020-04/">April, 2020</a></li>
<li><a href="/cgspace-notes/2020-03/">March, 2020</a></li>
</ol>
</section>

6
docs/2018-08/index.html
View File

@ -43,7 +43,7 @@ Anyways, perhaps I should increase the JVM heap from 5120m to 6144m like we did
The server only has 8GB of RAM so we&rsquo;ll eventually need to upgrade to a larger one because we&rsquo;ll start starving the OS, PostgreSQL, and command line batch processes
I ran all system updates on DSpace Test and rebooted it
"/>
<meta name="generator" content="Hugo 0.73.0" />
<meta name="generator" content="Hugo 0.74.1" />
@ -439,6 +439,8 @@ $ dspace database migrate ignored
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-07/">August, 2020</a></li>
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
<li><a href="/cgspace-notes/2020-06/">June, 2020</a></li>
@ -447,8 +449,6 @@ $ dspace database migrate ignored
<li><a href="/cgspace-notes/2020-04/">April, 2020</a></li>
<li><a href="/cgspace-notes/2020-03/">March, 2020</a></li>
</ol>
</section>

6
docs/2018-09/index.html
View File

@ -27,7 +27,7 @@ I&rsquo;ll update the DSpace role in our Ansible infrastructure playbooks and ru
Also, I&rsquo;ll re-run the postgresql tasks because the custom PostgreSQL variables are dynamic according to the system&rsquo;s RAM, and we never re-ran them after migrating to larger Linodes last month
I&rsquo;m testing the new DSpace 5.8 branch in my Ubuntu 18.04 environment and I&rsquo;m getting those autowire errors in Tomcat 8.5.30 again:
"/>
<meta name="generator" content="Hugo 0.73.0" />
<meta name="generator" content="Hugo 0.74.1" />
@ -745,6 +745,8 @@ UPDATE metadatavalue SET text_value='ja' WHERE resource_type_id=2 AND metadata_f
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-07/">August, 2020</a></li>
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
<li><a href="/cgspace-notes/2020-06/">June, 2020</a></li>
@ -753,8 +755,6 @@ UPDATE metadatavalue SET text_value='ja' WHERE resource_type_id=2 AND metadata_f
<li><a href="/cgspace-notes/2020-04/">April, 2020</a></li>
<li><a href="/cgspace-notes/2020-03/">March, 2020</a></li>
</ol>
</section>

6
docs/2018-10/index.html
View File

@ -23,7 +23,7 @@ I created a GitHub issue to track this #389, because I&rsquo;m super busy in Nai
Phil Thornton got an ORCID identifier so we need to add it to the list on CGSpace and tag his existing items
I created a GitHub issue to track this #389, because I&rsquo;m super busy in Nairobi right now
"/>
<meta name="generator" content="Hugo 0.73.0" />
<meta name="generator" content="Hugo 0.74.1" />
@ -653,6 +653,8 @@ $ curl -X GET -H &quot;Content-Type: application/json&quot; -H &quot;Accept: app
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-07/">August, 2020</a></li>
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
<li><a href="/cgspace-notes/2020-06/">June, 2020</a></li>
@ -661,8 +663,6 @@ $ curl -X GET -H &quot;Content-Type: application/json&quot; -H &quot;Accept: app
<li><a href="/cgspace-notes/2020-04/">April, 2020</a></li>
<li><a href="/cgspace-notes/2020-03/">March, 2020</a></li>
</ol>
</section>

6
docs/2018-11/index.html
View File

@ -33,7 +33,7 @@ Send a note about my dspace-statistics-api to the dspace-tech mailing list
Linode has been sending mails a few times a day recently that CGSpace (linode18) has had high CPU usage
Today these are the top 10 IPs:
"/>
<meta name="generator" content="Hugo 0.73.0" />
<meta name="generator" content="Hugo 0.74.1" />
@ -550,6 +550,8 @@ $ dspace dsrun org.dspace.eperson.Groomer -a -b 11/27/2016 -d
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-07/">August, 2020</a></li>
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
<li><a href="/cgspace-notes/2020-06/">June, 2020</a></li>
@ -558,8 +560,6 @@ $ dspace dsrun org.dspace.eperson.Groomer -a -b 11/27/2016 -d
<li><a href="/cgspace-notes/2020-04/">April, 2020</a></li>
<li><a href="/cgspace-notes/2020-03/">March, 2020</a></li>
</ol>
</section>

6
docs/2018-12/index.html
View File

@ -33,7 +33,7 @@ Then I ran all system updates and restarted the server
I noticed that there is another issue with PDF thumbnails on CGSpace, and I see there was another Ghostscript vulnerability last week
"/>
<meta name="generator" content="Hugo 0.73.0" />
<meta name="generator" content="Hugo 0.74.1" />
@ -591,6 +591,8 @@ UPDATE 1
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-07/">August, 2020</a></li>
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
<li><a href="/cgspace-notes/2020-06/">June, 2020</a></li>
@ -599,8 +601,6 @@ UPDATE 1
<li><a href="/cgspace-notes/2020-04/">April, 2020</a></li>
<li><a href="/cgspace-notes/2020-03/">March, 2020</a></li>
</ol>
</section>

6
docs/2019-01/index.html
View File

@ -47,7 +47,7 @@ I don&rsquo;t see anything interesting in the web server logs around that time t
357 207.46.13.1
903 54.70.40.11
"/>
<meta name="generator" content="Hugo 0.73.0" />
<meta name="generator" content="Hugo 0.74.1" />
@ -1261,6 +1261,8 @@ identify: CorruptImageProfile `xmp' @ warning/profile.c/SetImageProfileInternal/
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-07/">August, 2020</a></li>
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
<li><a href="/cgspace-notes/2020-06/">June, 2020</a></li>
@ -1269,8 +1271,6 @@ identify: CorruptImageProfile `xmp' @ warning/profile.c/SetImageProfileInternal/
<li><a href="/cgspace-notes/2020-04/">April, 2020</a></li>
<li><a href="/cgspace-notes/2020-03/">March, 2020</a></li>
</ol>
</section>

6
docs/2019-02/index.html
View File

@ -69,7 +69,7 @@ real 0m19.873s
user 0m22.203s
sys 0m1.979s
"/>
<meta name="generator" content="Hugo 0.73.0" />
<meta name="generator" content="Hugo 0.74.1" />
@ -1341,6 +1341,8 @@ Please see the DSpace documentation for assistance.
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-07/">August, 2020</a></li>
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
<li><a href="/cgspace-notes/2020-06/">June, 2020</a></li>
@ -1349,8 +1351,6 @@ Please see the DSpace documentation for assistance.
<li><a href="/cgspace-notes/2020-04/">April, 2020</a></li>
<li><a href="/cgspace-notes/2020-03/">March, 2020</a></li>
</ol>
</section>

6
docs/2019-03/index.html
View File

@ -43,7 +43,7 @@ Most worryingly, there are encoding errors in the abstracts for eleven items, fo
I think I will need to ask Udana to re-copy and paste the abstracts with more care using Google Docs
"/>
<meta name="generator" content="Hugo 0.73.0" />
<meta name="generator" content="Hugo 0.74.1" />
@ -1205,6 +1205,8 @@ sys 0m2.551s
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-07/">August, 2020</a></li>
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
<li><a href="/cgspace-notes/2020-06/">June, 2020</a></li>
@ -1213,8 +1215,6 @@ sys 0m2.551s
<li><a href="/cgspace-notes/2020-04/">April, 2020</a></li>
<li><a href="/cgspace-notes/2020-03/">March, 2020</a></li>
</ol>
</section>

6
docs/2019-04/index.html
View File

@ -61,7 +61,7 @@ $ ./fix-metadata-values.py -i /tmp/2019-02-21-fix-4-regions.csv -db dspace -u ds
$ ./delete-metadata-values.py -i /tmp/2019-02-21-delete-2-countries.csv -db dspace -u dspace -p &#39;fuuu&#39; -m 228 -f cg.coverage.country -d
$ ./delete-metadata-values.py -i /tmp/2019-02-21-delete-1-region.csv -db dspace -u dspace -p &#39;fuuu&#39; -m 231 -f cg.coverage.region -d
"/>
<meta name="generator" content="Hugo 0.73.0" />
<meta name="generator" content="Hugo 0.74.1" />
@ -1296,6 +1296,8 @@ UPDATE 14
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-07/">August, 2020</a></li>
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
<li><a href="/cgspace-notes/2020-06/">June, 2020</a></li>
@ -1304,8 +1306,6 @@ UPDATE 14
<li><a href="/cgspace-notes/2020-04/">April, 2020</a></li>
<li><a href="/cgspace-notes/2020-03/">March, 2020</a></li>
</ol>
</section>

6
docs/2019-05/index.html
View File

@ -45,7 +45,7 @@ DELETE 1
But after this I tried to delete the item from the XMLUI and it is still present&hellip;
"/>
<meta name="generator" content="Hugo 0.73.0" />
<meta name="generator" content="Hugo 0.74.1" />
@ -628,6 +628,8 @@ COPY 64871
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-07/">August, 2020</a></li>
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
<li><a href="/cgspace-notes/2020-06/">June, 2020</a></li>
@ -636,8 +638,6 @@ COPY 64871
<li><a href="/cgspace-notes/2020-04/">April, 2020</a></li>
<li><a href="/cgspace-notes/2020-03/">March, 2020</a></li>
</ol>
</section>

6
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@ -31,7 +31,7 @@ Run system updates on CGSpace (linode18) and reboot it
Skype with Marie-Angélique and Abenet about CG Core v2
"/>
<meta name="generator" content="Hugo 0.73.0" />
<meta name="generator" content="Hugo 0.74.1" />
@ -314,6 +314,8 @@ UPDATE 2
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-07/">August, 2020</a></li>
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
<li><a href="/cgspace-notes/2020-06/">June, 2020</a></li>
@ -322,8 +324,6 @@ UPDATE 2
<li><a href="/cgspace-notes/2020-04/">April, 2020</a></li>
<li><a href="/cgspace-notes/2020-03/">March, 2020</a></li>
</ol>
</section>

6
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@ -35,7 +35,7 @@ CGSpace
Abenet had another similar issue a few days ago when trying to find the stats for 2018 in the RTB community
"/>
<meta name="generator" content="Hugo 0.73.0" />
<meta name="generator" content="Hugo 0.74.1" />
@ -551,6 +551,8 @@ issn.validate('1020-3362')
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-07/">August, 2020</a></li>
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
<li><a href="/cgspace-notes/2020-06/">June, 2020</a></li>
@ -559,8 +561,6 @@ issn.validate('1020-3362')
<li><a href="/cgspace-notes/2020-04/">April, 2020</a></li>
<li><a href="/cgspace-notes/2020-03/">March, 2020</a></li>
</ol>
</section>

6
docs/2019-08/index.html
View File

@ -43,7 +43,7 @@ After rebooting, all statistics cores were loaded&hellip; wow, that&rsquo;s luck
Run system updates on DSpace Test (linode19) and reboot it
"/>
<meta name="generator" content="Hugo 0.73.0" />
<meta name="generator" content="Hugo 0.74.1" />
@ -570,6 +570,8 @@ sys 2m27.496s
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-07/">August, 2020</a></li>
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
<li><a href="/cgspace-notes/2020-06/">June, 2020</a></li>
@ -578,8 +580,6 @@ sys 2m27.496s
<li><a href="/cgspace-notes/2020-04/">April, 2020</a></li>
<li><a href="/cgspace-notes/2020-03/">March, 2020</a></li>
</ol>
</section>

6
docs/2019-09/index.html
View File

@ -69,7 +69,7 @@ Here are the top ten IPs in the nginx XMLUI and REST/OAI logs this morning:
7249 2a01:7e00::f03c:91ff:fe18:7396
9124 45.5.186.2
"/>
<meta name="generator" content="Hugo 0.73.0" />
<meta name="generator" content="Hugo 0.74.1" />
@ -578,6 +578,8 @@ $ csv-metadata-quality -i /tmp/clarisa-institutions.csv -o /tmp/clarisa-institut
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-07/">August, 2020</a></li>
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
<li><a href="/cgspace-notes/2020-06/">June, 2020</a></li>
@ -586,8 +588,6 @@ $ csv-metadata-quality -i /tmp/clarisa-institutions.csv -o /tmp/clarisa-institut
<li><a href="/cgspace-notes/2020-04/">April, 2020</a></li>
<li><a href="/cgspace-notes/2020-03/">March, 2020</a></li>
</ol>
</section>

6
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View File

@ -15,7 +15,7 @@
<meta name="twitter:card" content="summary"/>
<meta name="twitter:title" content="October, 2019"/>
<meta name="twitter:description" content="2019-10-01 Udana from IWMI asked me for a CSV export of their community on CGSpace I exported it, but a quick run through the csv-metadata-quality tool shows that there are some low-hanging fruits we can fix before I send him the data I will limit the scope to the titles, regions, subregions, and river basins for now to manually fix some non-breaking spaces (U&#43;00A0) there that would otherwise be removed by the csv-metadata-quality script&rsquo;s &ldquo;unneccesary Unicode&rdquo; fix: $ csvcut -c &#39;id,dc."/>
<meta name="generator" content="Hugo 0.73.0" />
<meta name="generator" content="Hugo 0.74.1" />
@ -382,6 +382,8 @@ $ dspace import -a -c 10568/104057 -e fuu@cgiar.org -m 2019-10-15-Bioversity.map
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-07/">August, 2020</a></li>
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
<li><a href="/cgspace-notes/2020-06/">June, 2020</a></li>
@ -390,8 +392,6 @@ $ dspace import -a -c 10568/104057 -e fuu@cgiar.org -m 2019-10-15-Bioversity.map
<li><a href="/cgspace-notes/2020-04/">April, 2020</a></li>
<li><a href="/cgspace-notes/2020-03/">March, 2020</a></li>
</ol>
</section>

6
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View File

@ -55,7 +55,7 @@ Let&rsquo;s see how many of the REST API requests were for bitstreams (because t
# zcat --force /var/log/nginx/rest.log.*.gz | grep -E &quot;[0-9]{1,2}/Oct/2019&quot; | grep -c -E &quot;/rest/bitstreams&quot;
106781
"/>
<meta name="generator" content="Hugo 0.73.0" />
<meta name="generator" content="Hugo 0.74.1" />
@ -689,6 +689,8 @@ $ tidy -xml -utf8 -iq -m -w 0 dspace/config/controlled-vocabularies/cg-creator-i
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-07/">August, 2020</a></li>
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
<li><a href="/cgspace-notes/2020-06/">June, 2020</a></li>
@ -697,8 +699,6 @@ $ tidy -xml -utf8 -iq -m -w 0 dspace/config/controlled-vocabularies/cg-creator-i
<li><a href="/cgspace-notes/2020-04/">April, 2020</a></li>
<li><a href="/cgspace-notes/2020-03/">March, 2020</a></li>
</ol>
</section>

6
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@ -43,7 +43,7 @@ Make sure all packages are up to date and the package manager is up to date, the
# dpkg -C
# reboot
"/>
<meta name="generator" content="Hugo 0.73.0" />
<meta name="generator" content="Hugo 0.74.1" />
@ -401,6 +401,8 @@ UPDATE 1
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-07/">August, 2020</a></li>
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
<li><a href="/cgspace-notes/2020-06/">June, 2020</a></li>
@ -409,8 +411,6 @@ UPDATE 1
<li><a href="/cgspace-notes/2020-04/">April, 2020</a></li>
<li><a href="/cgspace-notes/2020-03/">March, 2020</a></li>
</ol>
</section>

6
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@ -53,7 +53,7 @@ I tweeted the CGSpace repository link
"/>
<meta name="generator" content="Hugo 0.73.0" />
<meta name="generator" content="Hugo 0.74.1" />
@ -601,6 +601,8 @@ COPY 2900
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-07/">August, 2020</a></li>
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
<li><a href="/cgspace-notes/2020-06/">June, 2020</a></li>
@ -609,8 +611,6 @@ COPY 2900
<li><a href="/cgspace-notes/2020-04/">April, 2020</a></li>
<li><a href="/cgspace-notes/2020-03/">March, 2020</a></li>
</ol>
</section>

6
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View File

@ -35,7 +35,7 @@ The code finally builds and runs with a fresh install
"/>
<meta name="generator" content="Hugo 0.73.0" />
<meta name="generator" content="Hugo 0.74.1" />
@ -1272,6 +1272,8 @@ Moving: 21993 into core statistics-2019
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-07/">August, 2020</a></li>
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
<li><a href="/cgspace-notes/2020-06/">June, 2020</a></li>
@ -1280,8 +1282,6 @@ Moving: 21993 into core statistics-2019
<li><a href="/cgspace-notes/2020-04/">April, 2020</a></li>
<li><a href="/cgspace-notes/2020-03/">March, 2020</a></li>
</ol>
</section>

6
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@ -39,7 +39,7 @@ You need to download this into the DSpace 6.x source and compile it
"/>
<meta name="generator" content="Hugo 0.73.0" />
<meta name="generator" content="Hugo 0.74.1" />
@ -481,6 +481,8 @@ $ tidy -xml -utf8 -iq -m -w 0 dspace/config/controlled-vocabularies/cg-creator-i
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-07/">August, 2020</a></li>
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
<li><a href="/cgspace-notes/2020-06/">June, 2020</a></li>
@ -489,8 +491,6 @@ $ tidy -xml -utf8 -iq -m -w 0 dspace/config/controlled-vocabularies/cg-creator-i
<li><a href="/cgspace-notes/2020-04/">April, 2020</a></li>
<li><a href="/cgspace-notes/2020-03/">March, 2020</a></li>
</ol>
</section>

6
docs/2020-04/index.html
View File

@ -45,7 +45,7 @@ The third item now has a donut with score 1 since I tweeted it last week
On the same note, the one item Abenet pointed out last week now has a donut with score of 104 after I tweeted it last week
"/>
<meta name="generator" content="Hugo 0.73.0" />
<meta name="generator" content="Hugo 0.74.1" />
@ -655,6 +655,8 @@ $ psql -c 'select * from pg_stat_activity' | wc -l
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-07/">August, 2020</a></li>
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
<li><a href="/cgspace-notes/2020-06/">June, 2020</a></li>
@ -663,8 +665,6 @@ $ psql -c 'select * from pg_stat_activity' | wc -l
<li><a href="/cgspace-notes/2020-04/">April, 2020</a></li>
<li><a href="/cgspace-notes/2020-03/">March, 2020</a></li>
</ol>
</section>

6
docs/2020-05/index.html
View File

@ -31,7 +31,7 @@ I see that CGSpace (linode18) is still using PostgreSQL JDBC driver version 42.2
"/>
<meta name="generator" content="Hugo 0.73.0" />
<meta name="generator" content="Hugo 0.74.1" />
@ -474,6 +474,8 @@ Caused by: java.lang.NullPointerException
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-07/">August, 2020</a></li>
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
<li><a href="/cgspace-notes/2020-06/">June, 2020</a></li>
@ -482,8 +484,6 @@ Caused by: java.lang.NullPointerException
<li><a href="/cgspace-notes/2020-04/">April, 2020</a></li>
<li><a href="/cgspace-notes/2020-03/">March, 2020</a></li>
</ol>
</section>

6
docs/2020-06/index.html
View File

@ -33,7 +33,7 @@ I sent Atmire the dspace.log from today and told them to log into the server to
In other news, I checked the statistics API on DSpace 6 and it&rsquo;s working
I tried to build the OAI registry on the freshly migrated DSpace 6 on DSpace Test and I get an error:
"/>
<meta name="generator" content="Hugo 0.73.0" />
<meta name="generator" content="Hugo 0.74.1" />
@ -808,6 +808,8 @@ $ csvcut -c 'id,cg.subject.ilri[],cg.subject.ilri[en_US],dc.subject[en_US]' /tmp
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-07/">August, 2020</a></li>
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
<li><a href="/cgspace-notes/2020-06/">June, 2020</a></li>
@ -816,8 +818,6 @@ $ csvcut -c 'id,cg.subject.ilri[],cg.subject.ilri[en_US],dc.subject[en_US]' /tmp
<li><a href="/cgspace-notes/2020-04/">April, 2020</a></li>
<li><a href="/cgspace-notes/2020-03/">March, 2020</a></li>
</ol>
</section>

69
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@ -20,7 +20,7 @@ Since I was restarting Tomcat anyways I decided to redeploy the latest changes f
<meta property="og:type" content="article" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/2020-07/" />
<meta property="article:published_time" content="2020-07-01T10:53:54+03:00" />
<meta property="article:modified_time" content="2020-07-26T22:24:52+03:00" />
<meta property="article:modified_time" content="2020-07-27T20:07:52+03:00" />
<meta name="twitter:card" content="summary"/>
<meta name="twitter:title" content="July, 2020"/>
@ -35,7 +35,7 @@ I restarted Tomcat and PostgreSQL and the issue was gone
Since I was restarting Tomcat anyways I decided to redeploy the latest changes from the 5_x-prod branch and I added a note about COVID-19 items to the CGSpace frontpage at Peter&rsquo;s request
"/>
<meta name="generator" content="Hugo 0.73.0" />
<meta name="generator" content="Hugo 0.74.1" />
@ -45,9 +45,9 @@ Since I was restarting Tomcat anyways I decided to redeploy the latest changes f
"@type": "BlogPosting",
"headline": "July, 2020",
"url": "https://alanorth.github.io/cgspace-notes/2020-07/",
"wordCount": "5184",
"wordCount": "5618",
"datePublished": "2020-07-01T10:53:54+03:00",
"dateModified": "2020-07-26T22:24:52+03:00",
"dateModified": "2020-07-27T20:07:52+03:00",
"author": {
"@type": "Person",
"name": "Alan Orth"
@ -1063,7 +1063,62 @@ If run the update again with the resume option (-r) they will be reattempted
<pre><code>$ ./fix-metadata-values.py -i /tmp/2020-07-27-fix-ILRI-author.csv -db dspace -u cgspace -p 'fuuu' -f dc.contributor.author -t 'correct' -m 3
Fixed 13 occurences of: Muloi, D.
Fixed 4 occurences of: Muloi, D.M.
</code></pre><!-- raw HTML omitted -->
</code></pre><h2 id="2020-07-28">2020-07-28</h2>
<ul>
<li>I started analyzing the situation with the cases I&rsquo;ve seen where a Solr record fails to be migrated:
<ul>
<li><code>id: 0-unmigrated</code> are mostly (all?) <code>type: 5</code> aka site view</li>
<li><code>id: -1-unmigrated</code> are mostly (all?) <code>type: 5</code> aka site view</li>
<li><code>id: -1</code> are mostly (all?) <code>type: 5</code> aka site view</li>
<li><code>id: 59184-unmigrated</code> where &ldquo;59184&rdquo; is the id of an item or bitstream that no longer exists</li>
</ul>
</li>
<li>Why doesn&rsquo;t Atmire&rsquo;s code ignore any id with &ldquo;-unmigrated&rdquo;?</li>
<li>I sent feedback to Atmire since they had responded to my previous question yesterday
<ul>
<li>They said that the DSpace 6 version of CUA does not work with Tomcat 8.5&hellip;</li>
</ul>
</li>
<li>I spent a few hours trying to write a <a href="https://wiki.lyrasis.org/display/DSDOC5x/Curation+tasks+in+Jython">Jython-based curation task</a> to update ISO 3166-1 Alpha2 country codes based on each item&rsquo;s ISO 3166-1 country
<ul>
<li>Peter doesn&rsquo;t want to use the ISO 3166-1 list because he objects to a few names, so I thought we might be able to use country codes or numeric codes and update the names with a curation task</li>
<li>The work is very rough but kinda works: <a href="https://gist.github.com/alanorth/6a31af592b3467f7b63ac8aea7c75d52">mytask.py</a></li>
<li>What is nice is that the <code>dso.update()</code> method updates the data the &ldquo;DSpace way&rdquo; so we don&rsquo;t need to re-index Solr</li>
<li>I had a clever idea to &ldquo;vendor&rdquo; the pycountry code using <code>pip install pycountry -t</code>, but pycountry dropped support for Python 2 in 2019 so we can only use an outdated version</li>
<li>In the end it&rsquo;s really limiting to this particular task in Jython because we are stuck with Python 2, we can&rsquo;t use virtual environments, and there is a lot of code we&rsquo;d need to write to be able to handle the ISO 3166 country lists</li>
<li>Python 2 is no longer supported by the Python community anyways so it&rsquo;s probably better to figure out how to do this in Java</li>
</ul>
</li>
</ul>
<h2 id="2020-07-29">2020-07-29</h2>
<ul>
<li>The Atmire stats tool (com.atmire.statistics.util.update.atomic.AtomicStatisticsUpdateCLI) created 150GB of log files due to errors and the disk got full on DSpace Test (linode26)
<ul>
<li>This morning I had noticed that the run I started last night said that 54,000,000 (54 million!) records failed to process, but the core only had 6 million or so documents to process&hellip;!</li>
<li>I removed the large log files and optimized the Solr core</li>
</ul>
</li>
</ul>
<h2 id="2020-07-30">2020-07-30</h2>
<ul>
<li>Looking into ISO 3166-1 from the iso-codes package
<ul>
<li>I see that all current 249 countries have names, 173 have official names, and 6 have common names:</li>
</ul>
</li>
</ul>
<pre><code># grep -c numeric /usr/share/iso-codes/json/iso_3166-1.json
249
# grep -c -E '&quot;name&quot;:' /usr/share/iso-codes/json/iso_3166-1.json
249
# grep -c -E '&quot;official_name&quot;:' /usr/share/iso-codes/json/iso_3166-1.json
173
# grep -c -E '&quot;common_name&quot;:' /usr/share/iso-codes/json/iso_3166-1.json
6
</code></pre><ul>
<li>Wow, the <code>CC-BY-NC-ND-3.0-IGO</code> license that I had <a href="https://github.com/spdx/license-list-XML/issues/767">requested in 2019-02</a> was finally merged into SPDX&hellip;</li>
</ul>
<!-- raw HTML omitted -->
@ -1084,6 +1139,8 @@ Fixed 4 occurences of: Muloi, D.M.
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-07/">August, 2020</a></li>
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
<li><a href="/cgspace-notes/2020-06/">June, 2020</a></li>
@ -1092,8 +1149,6 @@ Fixed 4 occurences of: Muloi, D.M.
<li><a href="/cgspace-notes/2020-04/">April, 2020</a></li>
<li><a href="/cgspace-notes/2020-03/">March, 2020</a></li>
</ol>
</section>

6
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View File

@ -14,7 +14,7 @@
<meta name="twitter:card" content="summary"/>
<meta name="twitter:title" content="404 Page not found"/>
<meta name="twitter:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."/>
<meta name="generator" content="Hugo 0.73.0" />
<meta name="generator" content="Hugo 0.74.1" />
@ -94,6 +94,8 @@
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-07/">August, 2020</a></li>
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
<li><a href="/cgspace-notes/2020-06/">June, 2020</a></li>
@ -102,8 +104,6 @@
<li><a href="/cgspace-notes/2020-04/">April, 2020</a></li>
<li><a href="/cgspace-notes/2020-03/">March, 2020</a></li>
</ol>
</section>

10
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View File

@ -9,12 +9,12 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/" />
<meta property="og:updated_time" content="2020-07-26T22:24:52+03:00" />
<meta property="og:updated_time" content="2020-07-27T20:07:52+03:00" />
<meta name="twitter:card" content="summary"/>
<meta name="twitter:title" content="Categories"/>
<meta name="twitter:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."/>
<meta name="generator" content="Hugo 0.73.0" />
<meta name="generator" content="Hugo 0.74.1" />
@ -83,7 +83,7 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/categories/notes/">Notes</a></h2>
<p class="blog-post-meta"><time datetime="2020-07-01T10:53:54+03:00">Wed Jul 01, 2020</time> by Alan Orth</p>
<p class="blog-post-meta"><time datetime="2020-07-02T15:35:54+03:00">Thu Jul 02, 2020</time> by Alan Orth</p>
</header>
<a href='https://alanorth.github.io/cgspace-notes/categories/notes/'>Read more →</a>
@ -107,6 +107,8 @@
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-07/">August, 2020</a></li>
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
<li><a href="/cgspace-notes/2020-06/">June, 2020</a></li>
@ -115,8 +117,6 @@
<li><a href="/cgspace-notes/2020-04/">April, 2020</a></li>
<li><a href="/cgspace-notes/2020-03/">March, 2020</a></li>
</ol>
</section>

4
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@ -6,7 +6,7 @@
<description>Recent content in Categories on CGSpace Notes</description>
<generator>Hugo -- gohugo.io</generator>
<language>en-us</language>
<lastBuildDate>Wed, 01 Jul 2020 10:53:54 +0300</lastBuildDate>
<lastBuildDate>Thu, 02 Jul 2020 15:35:54 +0300</lastBuildDate>
<atom:link href="https://alanorth.github.io/cgspace-notes/categories/index.xml" rel="self" type="application/rss+xml" />
@ -14,7 +14,7 @@
<item>
<title>Notes</title>
<link>https://alanorth.github.io/cgspace-notes/categories/notes/</link>
<pubDate>Wed, 01 Jul 2020 10:53:54 +0300</pubDate>
<pubDate>Thu, 02 Jul 2020 15:35:54 +0300</pubDate>
<guid>https://alanorth.github.io/cgspace-notes/categories/notes/</guid>
<description></description>

56
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@ -9,12 +9,12 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/notes/" />
<meta property="og:updated_time" content="2020-07-26T22:24:52+03:00" />
<meta property="og:updated_time" content="2020-07-27T20:07:52+03:00" />
<meta name="twitter:card" content="summary"/>
<meta name="twitter:title" content="Notes"/>
<meta name="twitter:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."/>
<meta name="generator" content="Hugo 0.73.0" />
<meta name="generator" content="Hugo 0.74.1" />
@ -80,6 +80,33 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2020-07/">August, 2020</a></h2>
<p class="blog-post-meta"><time datetime="2020-07-02T15:35:54+03:00">Thu Jul 02, 2020</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2020-08-02">2020-08-02</h2>
<ul>
<li>I spent a few days working on a Java-based curation task to tag items with ISO 3166-1 Alpha2 country codes based on their <code>cg.coverage.country</code> text values
<ul>
<li>It looks up the names in ISO 3166-1 first, and then in our CGSpace countries mapping (which has five or so of Peter&rsquo;s preferred &ldquo;display&rdquo; country names)</li>
<li>It implements a &ldquo;force&rdquo; mode too that will clear existing country codes and re-tag everything</li>
<li>It is class based so I can easily add support for other vocabularies, and the technique could even be used for organizations with mappings to ROR and Clarisa&hellip;</li>
</ul>
</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2020-07/'>Read more →</a>
</article>
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2020-07/">July, 2020</a></h2>
@ -358,27 +385,6 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></h2>
<p class="blog-post-meta"><time datetime="2019-10-28T13:27:35+02:00">Mon Oct 28, 2019</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
<span class="fas fa-tag" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/tags/migration/" rel="tag">Migration</a>
</p>
</header>
<p>Possible changes to CGSpace metadata fields to align more with DC, QDC, and DCTERMS as well as CG Core v2.</p>
<p>With reference to <a href="https://agriculturalsemantics.github.io/cg-core/cgcore.html">CG Core v2 draft standard</a> by Marie-Angélique as well as <a href="http://www.dublincore.org/specifications/dublin-core/dcmi-terms/">DCMI DCTERMS</a>.</p>
<a href='https://alanorth.github.io/cgspace-notes/cgspace-cgcorev2-migration/'>Read more →</a>
</article>
<nav class="blog-pagination">
@ -403,6 +409,8 @@
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-07/">August, 2020</a></li>
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
<li><a href="/cgspace-notes/2020-06/">June, 2020</a></li>
@ -411,8 +419,6 @@
<li><a href="/cgspace-notes/2020-04/">April, 2020</a></li>
<li><a href="/cgspace-notes/2020-03/">March, 2020</a></li>
</ol>
</section>

20
docs/categories/notes/index.xml
View File

@ -6,11 +6,29 @@
<description>Recent content in Notes on CGSpace Notes</description>
<generator>Hugo -- gohugo.io</generator>
<language>en-us</language>
<lastBuildDate>Wed, 01 Jul 2020 10:53:54 +0300</lastBuildDate>
<lastBuildDate>Thu, 02 Jul 2020 15:35:54 +0300</lastBuildDate>
<atom:link href="https://alanorth.github.io/cgspace-notes/categories/notes/index.xml" rel="self" type="application/rss+xml" />
<item>
<title>August, 2020</title>
<link>https://alanorth.github.io/cgspace-notes/2020-07/</link>
<pubDate>Thu, 02 Jul 2020 15:35:54 +0300</pubDate>
<guid>https://alanorth.github.io/cgspace-notes/2020-07/</guid>
<description>&lt;h2 id=&#34;2020-08-02&#34;&gt;2020-08-02&lt;/h2&gt;
&lt;ul&gt;
&lt;li&gt;I spent a few days working on a Java-based curation task to tag items with ISO 3166-1 Alpha2 country codes based on their &lt;code&gt;cg.coverage.country&lt;/code&gt; text values
&lt;ul&gt;
&lt;li&gt;It looks up the names in ISO 3166-1 first, and then in our CGSpace countries mapping (which has five or so of Peter&amp;rsquo;s preferred &amp;ldquo;display&amp;rdquo; country names)&lt;/li&gt;
&lt;li&gt;It implements a &amp;ldquo;force&amp;rdquo; mode too that will clear existing country codes and re-tag everything&lt;/li&gt;
&lt;li&gt;It is class based so I can easily add support for other vocabularies, and the technique could even be used for organizations with mappings to ROR and Clarisa&amp;hellip;&lt;/li&gt;
&lt;/ul&gt;
&lt;/li&gt;
&lt;/ul&gt;</description>
</item>
<item>
<title>July, 2020</title>
<link>https://alanorth.github.io/cgspace-notes/2020-07/</link>

63
docs/categories/notes/page/2/index.html
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@ -9,12 +9,12 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/notes/" />
<meta property="og:updated_time" content="2020-07-26T22:24:52+03:00" />
<meta property="og:updated_time" content="2020-07-27T20:07:52+03:00" />
<meta name="twitter:card" content="summary"/>
<meta name="twitter:title" content="Notes"/>
<meta name="twitter:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."/>
<meta name="generator" content="Hugo 0.73.0" />
<meta name="generator" content="Hugo 0.74.1" />
@ -80,6 +80,27 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></h2>
<p class="blog-post-meta"><time datetime="2019-10-28T13:27:35+02:00">Mon Oct 28, 2019</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
<span class="fas fa-tag" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/tags/migration/" rel="tag">Migration</a>
</p>
</header>
<p>Possible changes to CGSpace metadata fields to align more with DC, QDC, and DCTERMS as well as CG Core v2.</p>
<p>With reference to <a href="https://agriculturalsemantics.github.io/cg-core/cgcore.html">CG Core v2 draft standard</a> by Marie-Angélique as well as <a href="http://www.dublincore.org/specifications/dublin-core/dcmi-terms/">DCMI DCTERMS</a>.</p>
<a href='https://alanorth.github.io/cgspace-notes/cgspace-cgcorev2-migration/'>Read more →</a>
</article>
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2019-10/">October, 2019</a></h2>
@ -379,40 +400,6 @@ sys 0m1.979s
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2019-01/">January, 2019</a></h2>
<p class="blog-post-meta"><time datetime="2019-01-02T09:48:30+02:00">Wed Jan 02, 2019</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2019-01-02">2019-01-02</h2>
<ul>
<li>Linode alerted that CGSpace (linode18) had a higher outbound traffic rate than normal early this morning</li>
<li>I don&rsquo;t see anything interesting in the web server logs around that time though:</li>
</ul>
<pre><code># zcat --force /var/log/nginx/*.log /var/log/nginx/*.log.1 | grep -E &quot;02/Jan/2019:0(1|2|3)&quot; | awk '{print $1}' | sort | uniq -c | sort -n | tail -n 10
92 40.77.167.4
99 210.7.29.100
120 38.126.157.45
177 35.237.175.180
177 40.77.167.32
216 66.249.75.219
225 18.203.76.93
261 46.101.86.248
357 207.46.13.1
903 54.70.40.11
</code></pre>
<a href='https://alanorth.github.io/cgspace-notes/2019-01/'>Read more →</a>
</article>
<nav class="blog-pagination">
<a class="btn btn-outline-primary" href="/cgspace-notes/categories/notes/" rel="prev" role="button">Previous page</a>
@ -437,6 +424,8 @@ sys 0m1.979s
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-07/">August, 2020</a></li>
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
<li><a href="/cgspace-notes/2020-06/">June, 2020</a></li>
@ -445,8 +434,6 @@ sys 0m1.979s
<li><a href="/cgspace-notes/2020-04/">April, 2020</a></li>
<li><a href="/cgspace-notes/2020-03/">March, 2020</a></li>
</ol>
</section>

63
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@ -9,12 +9,12 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/notes/" />
<meta property="og:updated_time" content="2020-07-26T22:24:52+03:00" />
<meta property="og:updated_time" content="2020-07-27T20:07:52+03:00" />
<meta name="twitter:card" content="summary"/>
<meta name="twitter:title" content="Notes"/>
<meta name="twitter:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."/>
<meta name="generator" content="Hugo 0.73.0" />
<meta name="generator" content="Hugo 0.74.1" />
@ -80,6 +80,40 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2019-01/">January, 2019</a></h2>
<p class="blog-post-meta"><time datetime="2019-01-02T09:48:30+02:00">Wed Jan 02, 2019</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2019-01-02">2019-01-02</h2>
<ul>
<li>Linode alerted that CGSpace (linode18) had a higher outbound traffic rate than normal early this morning</li>
<li>I don&rsquo;t see anything interesting in the web server logs around that time though:</li>
</ul>
<pre><code># zcat --force /var/log/nginx/*.log /var/log/nginx/*.log.1 | grep -E &quot;02/Jan/2019:0(1|2|3)&quot; | awk '{print $1}' | sort | uniq -c | sort -n | tail -n 10
92 40.77.167.4
99 210.7.29.100
120 38.126.157.45
177 35.237.175.180
177 40.77.167.32
216 66.249.75.219
225 18.203.76.93
261 46.101.86.248
357 207.46.13.1
903 54.70.40.11
</code></pre>
<a href='https://alanorth.github.io/cgspace-notes/2019-01/'>Read more →</a>
</article>
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2018-12/">December, 2018</a></h2>
@ -326,27 +360,6 @@ sys 2m7.289s
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2018-03/">March, 2018</a></h2>
<p class="blog-post-meta"><time datetime="2018-03-02T16:07:54+02:00">Fri Mar 02, 2018</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2018-03-02">2018-03-02</h2>
<ul>
<li>Export a CSV of the IITA community metadata for Martin Mueller</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2018-03/'>Read more →</a>
</article>
<nav class="blog-pagination">
<a class="btn btn-outline-primary" href="/cgspace-notes/categories/notes/page/2/" rel="prev" role="button">Previous page</a>
@ -371,6 +384,8 @@ sys 2m7.289s
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-07/">August, 2020</a></li>
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
<li><a href="/cgspace-notes/2020-06/">June, 2020</a></li>
@ -379,8 +394,6 @@ sys 2m7.289s
<li><a href="/cgspace-notes/2020-04/">April, 2020</a></li>
<li><a href="/cgspace-notes/2020-03/">March, 2020</a></li>
</ol>
</section>

29
docs/categories/notes/page/4/index.html
View File

@ -9,12 +9,12 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/notes/" />
<meta property="og:updated_time" content="2020-07-26T22:24:52+03:00" />
<meta property="og:updated_time" content="2020-07-27T20:07:52+03:00" />
<meta name="twitter:card" content="summary"/>
<meta name="twitter:title" content="Notes"/>
<meta name="twitter:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."/>
<meta name="generator" content="Hugo 0.73.0" />
<meta name="generator" content="Hugo 0.74.1" />
@ -80,6 +80,27 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2018-03/">March, 2018</a></h2>
<p class="blog-post-meta"><time datetime="2018-03-02T16:07:54+02:00">Fri Mar 02, 2018</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2018-03-02">2018-03-02</h2>
<ul>
<li>Export a CSV of the IITA community metadata for Martin Mueller</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2018-03/'>Read more →</a>
</article>
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2018-02/">February, 2018</a></h2>
@ -314,6 +335,8 @@ COPY 54701
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-07/">August, 2020</a></li>
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
<li><a href="/cgspace-notes/2020-06/">June, 2020</a></li>
@ -322,8 +345,6 @@ COPY 54701
<li><a href="/cgspace-notes/2020-04/">April, 2020</a></li>
<li><a href="/cgspace-notes/2020-03/">March, 2020</a></li>
</ol>
</section>

6
docs/cgiar-library-migration/index.html
View File

@ -15,7 +15,7 @@
<meta name="twitter:card" content="summary"/>
<meta name="twitter:title" content="CGIAR Library Migration"/>
<meta name="twitter:description" content="Notes on the migration of the CGIAR Library to CGSpace"/>
<meta name="generator" content="Hugo 0.73.0" />
<meta name="generator" content="Hugo 0.74.1" />
@ -279,6 +279,8 @@ dspace=# select setval('handle_seq',86873);
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-07/">August, 2020</a></li>
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
<li><a href="/cgspace-notes/2020-06/">June, 2020</a></li>
@ -287,8 +289,6 @@ dspace=# select setval('handle_seq',86873);
<li><a href="/cgspace-notes/2020-04/">April, 2020</a></li>
<li><a href="/cgspace-notes/2020-03/">March, 2020</a></li>
</ol>
</section>

6
docs/cgspace-cgcorev2-migration/index.html
View File

@ -15,7 +15,7 @@
<meta name="twitter:card" content="summary"/>
<meta name="twitter:title" content="CGSpace CG Core v2 Migration"/>
<meta name="twitter:description" content="Possible changes to CGSpace metadata fields to align more with DC, QDC, and DCTERMS as well as CG Core v2."/>
<meta name="generator" content="Hugo 0.73.0" />
<meta name="generator" content="Hugo 0.74.1" />
@ -451,6 +451,8 @@
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-07/">August, 2020</a></li>
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
<li><a href="/cgspace-notes/2020-06/">June, 2020</a></li>
@ -459,8 +461,6 @@
<li><a href="/cgspace-notes/2020-04/">April, 2020</a></li>
<li><a href="/cgspace-notes/2020-03/">March, 2020</a></li>
</ol>
</section>

58
docs/index.html
View File

@ -9,12 +9,12 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />
<meta property="og:updated_time" content="2020-07-26T22:24:52+03:00" />
<meta property="og:updated_time" content="2020-07-27T20:07:52+03:00" />
<meta name="twitter:card" content="summary"/>
<meta name="twitter:title" content="CGSpace Notes"/>
<meta name="twitter:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."/>
<meta name="generator" content="Hugo 0.73.0" />
<meta name="generator" content="Hugo 0.74.1" />
@ -28,7 +28,7 @@
"@type": "Person",
"name": "Alan Orth"
},
"dateModified": "2020-07-01T10:53:54+03:00",
"dateModified": "2020-07-02T15:35:54+03:00",
"keywords": "notes,""migration,""notes,",
"description":"Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
}
@ -95,6 +95,33 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2020-07/">August, 2020</a></h2>
<p class="blog-post-meta"><time datetime="2020-07-02T15:35:54+03:00">Thu Jul 02, 2020</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2020-08-02">2020-08-02</h2>
<ul>
<li>I spent a few days working on a Java-based curation task to tag items with ISO 3166-1 Alpha2 country codes based on their <code>cg.coverage.country</code> text values
<ul>
<li>It looks up the names in ISO 3166-1 first, and then in our CGSpace countries mapping (which has five or so of Peter&rsquo;s preferred &ldquo;display&rdquo; country names)</li>
<li>It implements a &ldquo;force&rdquo; mode too that will clear existing country codes and re-tag everything</li>
<li>It is class based so I can easily add support for other vocabularies, and the technique could even be used for organizations with mappings to ROR and Clarisa&hellip;</li>
</ul>
</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2020-07/'>Read more →</a>
</article>
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2020-07/">July, 2020</a></h2>
@ -373,27 +400,6 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></h2>
<p class="blog-post-meta"><time datetime="2019-10-28T13:27:35+02:00">Mon Oct 28, 2019</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
<span class="fas fa-tag" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/tags/migration/" rel="tag">Migration</a>
</p>
</header>
<p>Possible changes to CGSpace metadata fields to align more with DC, QDC, and DCTERMS as well as CG Core v2.</p>
<p>With reference to <a href="https://agriculturalsemantics.github.io/cg-core/cgcore.html">CG Core v2 draft standard</a> by Marie-Angélique as well as <a href="http://www.dublincore.org/specifications/dublin-core/dcmi-terms/">DCMI DCTERMS</a>.</p>
<a href='https://alanorth.github.io/cgspace-notes/cgspace-cgcorev2-migration/'>Read more →</a>
</article>
<nav class="blog-pagination">
@ -418,6 +424,8 @@
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-07/">August, 2020</a></li>
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
<li><a href="/cgspace-notes/2020-06/">June, 2020</a></li>
@ -426,8 +434,6 @@
<li><a href="/cgspace-notes/2020-04/">April, 2020</a></li>
<li><a href="/cgspace-notes/2020-03/">March, 2020</a></li>
</ol>
</section>

20
docs/index.xml
View File

@ -6,11 +6,29 @@
<description>Recent content on CGSpace Notes</description>
<generator>Hugo -- gohugo.io</generator>
<language>en-us</language>
<lastBuildDate>Wed, 01 Jul 2020 10:53:54 +0300</lastBuildDate>
<lastBuildDate>Thu, 02 Jul 2020 15:35:54 +0300</lastBuildDate>
<atom:link href="https://alanorth.github.io/cgspace-notes/index.xml" rel="self" type="application/rss+xml" />
<item>
<title>August, 2020</title>
<link>https://alanorth.github.io/cgspace-notes/2020-07/</link>
<pubDate>Thu, 02 Jul 2020 15:35:54 +0300</pubDate>
<guid>https://alanorth.github.io/cgspace-notes/2020-07/</guid>
<description>&lt;h2 id=&#34;2020-08-02&#34;&gt;2020-08-02&lt;/h2&gt;
&lt;ul&gt;
&lt;li&gt;I spent a few days working on a Java-based curation task to tag items with ISO 3166-1 Alpha2 country codes based on their &lt;code&gt;cg.coverage.country&lt;/code&gt; text values
&lt;ul&gt;
&lt;li&gt;It looks up the names in ISO 3166-1 first, and then in our CGSpace countries mapping (which has five or so of Peter&amp;rsquo;s preferred &amp;ldquo;display&amp;rdquo; country names)&lt;/li&gt;
&lt;li&gt;It implements a &amp;ldquo;force&amp;rdquo; mode too that will clear existing country codes and re-tag everything&lt;/li&gt;
&lt;li&gt;It is class based so I can easily add support for other vocabularies, and the technique could even be used for organizations with mappings to ROR and Clarisa&amp;hellip;&lt;/li&gt;
&lt;/ul&gt;
&lt;/li&gt;
&lt;/ul&gt;</description>
</item>
<item>
<title>July, 2020</title>
<link>https://alanorth.github.io/cgspace-notes/2020-07/</link>

65
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@ -9,12 +9,12 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />
<meta property="og:updated_time" content="2020-07-26T22:24:52+03:00" />
<meta property="og:updated_time" content="2020-07-27T20:07:52+03:00" />
<meta name="twitter:card" content="summary"/>
<meta name="twitter:title" content="CGSpace Notes"/>
<meta name="twitter:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."/>
<meta name="generator" content="Hugo 0.73.0" />
<meta name="generator" content="Hugo 0.74.1" />
@ -28,7 +28,7 @@
"@type": "Person",
"name": "Alan Orth"
},
"dateModified": "2020-07-01T10:53:54+03:00",
"dateModified": "2020-07-02T15:35:54+03:00",
"keywords": "notes,""migration,""notes,",
"description":"Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
}
@ -95,6 +95,27 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></h2>
<p class="blog-post-meta"><time datetime="2019-10-28T13:27:35+02:00">Mon Oct 28, 2019</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
<span class="fas fa-tag" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/tags/migration/" rel="tag">Migration</a>
</p>
</header>
<p>Possible changes to CGSpace metadata fields to align more with DC, QDC, and DCTERMS as well as CG Core v2.</p>
<p>With reference to <a href="https://agriculturalsemantics.github.io/cg-core/cgcore.html">CG Core v2 draft standard</a> by Marie-Angélique as well as <a href="http://www.dublincore.org/specifications/dublin-core/dcmi-terms/">DCMI DCTERMS</a>.</p>
<a href='https://alanorth.github.io/cgspace-notes/cgspace-cgcorev2-migration/'>Read more →</a>
</article>
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2019-10/">October, 2019</a></h2>
@ -394,40 +415,6 @@ sys 0m1.979s
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2019-01/">January, 2019</a></h2>
<p class="blog-post-meta"><time datetime="2019-01-02T09:48:30+02:00">Wed Jan 02, 2019</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2019-01-02">2019-01-02</h2>
<ul>
<li>Linode alerted that CGSpace (linode18) had a higher outbound traffic rate than normal early this morning</li>
<li>I don&rsquo;t see anything interesting in the web server logs around that time though:</li>
</ul>
<pre><code># zcat --force /var/log/nginx/*.log /var/log/nginx/*.log.1 | grep -E &quot;02/Jan/2019:0(1|2|3)&quot; | awk '{print $1}' | sort | uniq -c | sort -n | tail -n 10
92 40.77.167.4
99 210.7.29.100
120 38.126.157.45
177 35.237.175.180
177 40.77.167.32
216 66.249.75.219
225 18.203.76.93
261 46.101.86.248
357 207.46.13.1
903 54.70.40.11
</code></pre>
<a href='https://alanorth.github.io/cgspace-notes/2019-01/'>Read more →</a>
</article>
<nav class="blog-pagination">
<a class="btn btn-outline-primary" href="/cgspace-notes/" rel="prev" role="button">Previous page</a>
@ -452,6 +439,8 @@ sys 0m1.979s
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-07/">August, 2020</a></li>
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
<li><a href="/cgspace-notes/2020-06/">June, 2020</a></li>
@ -460,8 +449,6 @@ sys 0m1.979s
<li><a href="/cgspace-notes/2020-04/">April, 2020</a></li>
<li><a href="/cgspace-notes/2020-03/">March, 2020</a></li>
</ol>
</section>

65
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@ -9,12 +9,12 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />
<meta property="og:updated_time" content="2020-07-26T22:24:52+03:00" />
<meta property="og:updated_time" content="2020-07-27T20:07:52+03:00" />
<meta name="twitter:card" content="summary"/>
<meta name="twitter:title" content="CGSpace Notes"/>
<meta name="twitter:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."/>
<meta name="generator" content="Hugo 0.73.0" />
<meta name="generator" content="Hugo 0.74.1" />
@ -28,7 +28,7 @@
"@type": "Person",
"name": "Alan Orth"
},
"dateModified": "2020-07-01T10:53:54+03:00",
"dateModified": "2020-07-02T15:35:54+03:00",
"keywords": "notes,""migration,""notes,",
"description":"Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
}
@ -95,6 +95,40 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2019-01/">January, 2019</a></h2>
<p class="blog-post-meta"><time datetime="2019-01-02T09:48:30+02:00">Wed Jan 02, 2019</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2019-01-02">2019-01-02</h2>
<ul>
<li>Linode alerted that CGSpace (linode18) had a higher outbound traffic rate than normal early this morning</li>
<li>I don&rsquo;t see anything interesting in the web server logs around that time though:</li>
</ul>
<pre><code># zcat --force /var/log/nginx/*.log /var/log/nginx/*.log.1 | grep -E &quot;02/Jan/2019:0(1|2|3)&quot; | awk '{print $1}' | sort | uniq -c | sort -n | tail -n 10
92 40.77.167.4
99 210.7.29.100
120 38.126.157.45
177 35.237.175.180
177 40.77.167.32
216 66.249.75.219
225 18.203.76.93
261 46.101.86.248
357 207.46.13.1
903 54.70.40.11
</code></pre>
<a href='https://alanorth.github.io/cgspace-notes/2019-01/'>Read more →</a>
</article>
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2018-12/">December, 2018</a></h2>
@ -341,27 +375,6 @@ sys 2m7.289s
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2018-03/">March, 2018</a></h2>
<p class="blog-post-meta"><time datetime="2018-03-02T16:07:54+02:00">Fri Mar 02, 2018</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2018-03-02">2018-03-02</h2>
<ul>
<li>Export a CSV of the IITA community metadata for Martin Mueller</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2018-03/'>Read more →</a>
</article>
<nav class="blog-pagination">
<a class="btn btn-outline-primary" href="/cgspace-notes/page/2/" rel="prev" role="button">Previous page</a>
@ -386,6 +399,8 @@ sys 2m7.289s
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-07/">August, 2020</a></li>
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
<li><a href="/cgspace-notes/2020-06/">June, 2020</a></li>
@ -394,8 +409,6 @@ sys 2m7.289s
<li><a href="/cgspace-notes/2020-04/">April, 2020</a></li>
<li><a href="/cgspace-notes/2020-03/">March, 2020</a></li>
</ol>
</section>

49
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@ -9,12 +9,12 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />
<meta property="og:updated_time" content="2020-07-26T22:24:52+03:00" />
<meta property="og:updated_time" content="2020-07-27T20:07:52+03:00" />
<meta name="twitter:card" content="summary"/>
<meta name="twitter:title" content="CGSpace Notes"/>
<meta name="twitter:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."/>
<meta name="generator" content="Hugo 0.73.0" />
<meta name="generator" content="Hugo 0.74.1" />
@ -28,7 +28,7 @@
"@type": "Person",
"name": "Alan Orth"
},
"dateModified": "2020-07-01T10:53:54+03:00",
"dateModified": "2020-07-02T15:35:54+03:00",
"keywords": "notes,""migration,""notes,",
"description":"Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
}
@ -95,6 +95,27 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2018-03/">March, 2018</a></h2>
<p class="blog-post-meta"><time datetime="2018-03-02T16:07:54+02:00">Fri Mar 02, 2018</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2018-03-02">2018-03-02</h2>
<ul>
<li>Export a CSV of the IITA community metadata for Martin Mueller</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2018-03/'>Read more →</a>
</article>
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2018-02/">February, 2018</a></h2>
@ -396,24 +417,6 @@ COPY 54701
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2017-06/">June, 2017</a></h2>
<p class="blog-post-meta"><time datetime="2017-06-01T10:14:52+03:00">Thu Jun 01, 2017</time> by Alan Orth in
<span class="fas fa-tag" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/tags/notes/" rel="tag">Notes</a>
</p>
</header>
2017-06-01 After discussion with WLE and CGSpace content people, we decided to just add one metadata field for the WLE Research Themes The cg.identifier.wletheme field will be used for both Phase I and Phase II Research Themes Then we&rsquo;ll create a new sub-community for Phase II and create collections for the research themes there The current &ldquo;Research Themes&rdquo; community will be renamed to &ldquo;WLE Phase I Research Themes&rdquo; Tagged all items in the current Phase I collections with their appropriate themes Create pull request to add Phase II research themes to the submission form: #328 Add cg.
<a href='https://alanorth.github.io/cgspace-notes/2017-06/'>Read more →</a>
</article>
<nav class="blog-pagination">
<a class="btn btn-outline-primary" href="/cgspace-notes/page/3/" rel="prev" role="button">Previous page</a>
@ -438,6 +441,8 @@ COPY 54701
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-07/">August, 2020</a></li>
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
<li><a href="/cgspace-notes/2020-06/">June, 2020</a></li>
@ -446,8 +451,6 @@ COPY 54701
<li><a href="/cgspace-notes/2020-04/">April, 2020</a></li>
<li><a href="/cgspace-notes/2020-03/">March, 2020</a></li>
</ol>
</section>

58
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@ -9,12 +9,12 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />
<meta property="og:updated_time" content="2020-07-26T22:24:52+03:00" />
<meta property="og:updated_time" content="2020-07-27T20:07:52+03:00" />
<meta name="twitter:card" content="summary"/>
<meta name="twitter:title" content="CGSpace Notes"/>
<meta name="twitter:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."/>
<meta name="generator" content="Hugo 0.73.0" />
<meta name="generator" content="Hugo 0.74.1" />
@ -28,7 +28,7 @@
"@type": "Person",
"name": "Alan Orth"
},
"dateModified": "2020-07-01T10:53:54+03:00",
"dateModified": "2020-07-02T15:35:54+03:00",
"keywords": "notes,""migration,""notes,",
"description":"Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
}
@ -95,6 +95,24 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2017-06/">June, 2017</a></h2>
<p class="blog-post-meta"><time datetime="2017-06-01T10:14:52+03:00">Thu Jun 01, 2017</time> by Alan Orth in
<span class="fas fa-tag" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/tags/notes/" rel="tag">Notes</a>
</p>
</header>
2017-06-01 After discussion with WLE and CGSpace content people, we decided to just add one metadata field for the WLE Research Themes The cg.identifier.wletheme field will be used for both Phase I and Phase II Research Themes Then we&rsquo;ll create a new sub-community for Phase II and create collections for the research themes there The current &ldquo;Research Themes&rdquo; community will be renamed to &ldquo;WLE Phase I Research Themes&rdquo; Tagged all items in the current Phase I collections with their appropriate themes Create pull request to add Phase II research themes to the submission form: #328 Add cg.
<a href='https://alanorth.github.io/cgspace-notes/2017-06/'>Read more →</a>
</article>
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2017-05/">May, 2017</a></h2>
@ -344,36 +362,6 @@ DELETE 1
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2016-08/">August, 2016</a></h2>
<p class="blog-post-meta"><time datetime="2016-08-01T15:53:00+03:00">Mon Aug 01, 2016</time> by Alan Orth in
<span class="fas fa-tag" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/tags/notes/" rel="tag">Notes</a>
</p>
</header>
<h2 id="2016-08-01">2016-08-01</h2>
<ul>
<li>Add updated distribution license from Sisay (<a href="https://github.com/ilri/DSpace/issues/259">#259</a>)</li>
<li>Play with upgrading Mirage 2 dependencies in <code>bower.json</code> because most are several versions of out date</li>
<li>Bootstrap is at 3.3.0 but upstream is at 3.3.7, and upgrading to anything beyond 3.3.1 breaks glyphicons and probably more</li>
<li>bower stuff is a dead end, waste of time, too many issues</li>
<li>Anything after Bootstrap 3.3.1 makes glyphicons disappear (HTTP 404 trying to access from incorrect path of <code>fonts</code>)</li>
<li>Start working on DSpace 5.1 → 5.5 port:</li>
</ul>
<pre><code>$ git checkout -b 55new 5_x-prod
$ git reset --hard ilri/5_x-prod
$ git rebase -i dspace-5.5
</code></pre>
<a href='https://alanorth.github.io/cgspace-notes/2016-08/'>Read more →</a>
</article>
<nav class="blog-pagination">
<a class="btn btn-outline-primary" href="/cgspace-notes/page/4/" rel="prev" role="button">Previous page</a>
@ -398,6 +386,8 @@ $ git rebase -i dspace-5.5
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-07/">August, 2020</a></li>
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
<li><a href="/cgspace-notes/2020-06/">June, 2020</a></li>
@ -406,8 +396,6 @@ $ git rebase -i dspace-5.5
<li><a href="/cgspace-notes/2020-04/">April, 2020</a></li>
<li><a href="/cgspace-notes/2020-03/">March, 2020</a></li>
</ol>
</section>

40
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@ -9,12 +9,12 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />
<meta property="og:updated_time" content="2020-07-26T22:24:52+03:00" />
<meta property="og:updated_time" content="2020-07-27T20:07:52+03:00" />
<meta name="twitter:card" content="summary"/>
<meta name="twitter:title" content="CGSpace Notes"/>
<meta name="twitter:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."/>
<meta name="generator" content="Hugo 0.73.0" />
<meta name="generator" content="Hugo 0.74.1" />
@ -28,7 +28,7 @@
"@type": "Person",
"name": "Alan Orth"
},
"dateModified": "2020-07-01T10:53:54+03:00",
"dateModified": "2020-07-02T15:35:54+03:00",
"keywords": "notes,""migration,""notes,",
"description":"Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
}
@ -95,6 +95,36 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2016-08/">August, 2016</a></h2>
<p class="blog-post-meta"><time datetime="2016-08-01T15:53:00+03:00">Mon Aug 01, 2016</time> by Alan Orth in
<span class="fas fa-tag" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/tags/notes/" rel="tag">Notes</a>
</p>
</header>
<h2 id="2016-08-01">2016-08-01</h2>
<ul>
<li>Add updated distribution license from Sisay (<a href="https://github.com/ilri/DSpace/issues/259">#259</a>)</li>
<li>Play with upgrading Mirage 2 dependencies in <code>bower.json</code> because most are several versions of out date</li>
<li>Bootstrap is at 3.3.0 but upstream is at 3.3.7, and upgrading to anything beyond 3.3.1 breaks glyphicons and probably more</li>
<li>bower stuff is a dead end, waste of time, too many issues</li>
<li>Anything after Bootstrap 3.3.1 makes glyphicons disappear (HTTP 404 trying to access from incorrect path of <code>fonts</code>)</li>
<li>Start working on DSpace 5.1 → 5.5 port:</li>
</ul>
<pre><code>$ git checkout -b 55new 5_x-prod
$ git reset --hard ilri/5_x-prod
$ git rebase -i dspace-5.5
</code></pre>
<a href='https://alanorth.github.io/cgspace-notes/2016-08/'>Read more →</a>
</article>
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2016-07/">July, 2016</a></h2>
@ -353,6 +383,8 @@ dspacetest=# select text_value from metadatavalue where metadata_field_id=3 and
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-07/">August, 2020</a></li>
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
<li><a href="/cgspace-notes/2020-06/">June, 2020</a></li>
@ -361,8 +393,6 @@ dspacetest=# select text_value from metadatavalue where metadata_field_id=3 and
<li><a href="/cgspace-notes/2020-04/">April, 2020</a></li>
<li><a href="/cgspace-notes/2020-03/">March, 2020</a></li>
</ol>
</section>

58
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View File

@ -9,12 +9,12 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" />
<meta property="og:updated_time" content="2020-07-26T22:24:52+03:00" />
<meta property="og:updated_time" content="2020-07-27T20:07:52+03:00" />
<meta name="twitter:card" content="summary"/>
<meta name="twitter:title" content="Posts"/>
<meta name="twitter:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."/>
<meta name="generator" content="Hugo 0.73.0" />
<meta name="generator" content="Hugo 0.74.1" />
@ -28,7 +28,7 @@
"@type": "Person",
"name": "Alan Orth"
},
"dateModified": "2020-07-01T10:53:54+03:00",
"dateModified": "2020-07-02T15:35:54+03:00",
"keywords": "notes,""migration,""notes,",
"description":"Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
}
@ -95,6 +95,33 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2020-07/">August, 2020</a></h2>
<p class="blog-post-meta"><time datetime="2020-07-02T15:35:54+03:00">Thu Jul 02, 2020</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2020-08-02">2020-08-02</h2>
<ul>
<li>I spent a few days working on a Java-based curation task to tag items with ISO 3166-1 Alpha2 country codes based on their <code>cg.coverage.country</code> text values
<ul>
<li>It looks up the names in ISO 3166-1 first, and then in our CGSpace countries mapping (which has five or so of Peter&rsquo;s preferred &ldquo;display&rdquo; country names)</li>
<li>It implements a &ldquo;force&rdquo; mode too that will clear existing country codes and re-tag everything</li>
<li>It is class based so I can easily add support for other vocabularies, and the technique could even be used for organizations with mappings to ROR and Clarisa&hellip;</li>
</ul>
</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2020-07/'>Read more →</a>
</article>
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2020-07/">July, 2020</a></h2>
@ -373,27 +400,6 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></h2>
<p class="blog-post-meta"><time datetime="2019-10-28T13:27:35+02:00">Mon Oct 28, 2019</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
<span class="fas fa-tag" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/tags/migration/" rel="tag">Migration</a>
</p>
</header>
<p>Possible changes to CGSpace metadata fields to align more with DC, QDC, and DCTERMS as well as CG Core v2.</p>
<p>With reference to <a href="https://agriculturalsemantics.github.io/cg-core/cgcore.html">CG Core v2 draft standard</a> by Marie-Angélique as well as <a href="http://www.dublincore.org/specifications/dublin-core/dcmi-terms/">DCMI DCTERMS</a>.</p>
<a href='https://alanorth.github.io/cgspace-notes/cgspace-cgcorev2-migration/'>Read more →</a>
</article>
<nav class="blog-pagination">
@ -418,6 +424,8 @@
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-07/">August, 2020</a></li>
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
<li><a href="/cgspace-notes/2020-06/">June, 2020</a></li>
@ -426,8 +434,6 @@
<li><a href="/cgspace-notes/2020-04/">April, 2020</a></li>
<li><a href="/cgspace-notes/2020-03/">March, 2020</a></li>
</ol>
</section>

20
docs/posts/index.xml
View File

@ -6,11 +6,29 @@
<description>Recent content in Posts on CGSpace Notes</description>
<generator>Hugo -- gohugo.io</generator>
<language>en-us</language>
<lastBuildDate>Wed, 01 Jul 2020 10:53:54 +0300</lastBuildDate>
<lastBuildDate>Thu, 02 Jul 2020 15:35:54 +0300</lastBuildDate>
<atom:link href="https://alanorth.github.io/cgspace-notes/posts/index.xml" rel="self" type="application/rss+xml" />
<item>
<title>August, 2020</title>
<link>https://alanorth.github.io/cgspace-notes/2020-07/</link>
<pubDate>Thu, 02 Jul 2020 15:35:54 +0300</pubDate>
<guid>https://alanorth.github.io/cgspace-notes/2020-07/</guid>
<description>&lt;h2 id=&#34;2020-08-02&#34;&gt;2020-08-02&lt;/h2&gt;
&lt;ul&gt;
&lt;li&gt;I spent a few days working on a Java-based curation task to tag items with ISO 3166-1 Alpha2 country codes based on their &lt;code&gt;cg.coverage.country&lt;/code&gt; text values
&lt;ul&gt;
&lt;li&gt;It looks up the names in ISO 3166-1 first, and then in our CGSpace countries mapping (which has five or so of Peter&amp;rsquo;s preferred &amp;ldquo;display&amp;rdquo; country names)&lt;/li&gt;
&lt;li&gt;It implements a &amp;ldquo;force&amp;rdquo; mode too that will clear existing country codes and re-tag everything&lt;/li&gt;
&lt;li&gt;It is class based so I can easily add support for other vocabularies, and the technique could even be used for organizations with mappings to ROR and Clarisa&amp;hellip;&lt;/li&gt;
&lt;/ul&gt;
&lt;/li&gt;
&lt;/ul&gt;</description>
</item>
<item>
<title>July, 2020</title>
<link>https://alanorth.github.io/cgspace-notes/2020-07/</link>

65
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@ -9,12 +9,12 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" />
<meta property="og:updated_time" content="2020-07-26T22:24:52+03:00" />
<meta property="og:updated_time" content="2020-07-27T20:07:52+03:00" />
<meta name="twitter:card" content="summary"/>
<meta name="twitter:title" content="Posts"/>
<meta name="twitter:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."/>
<meta name="generator" content="Hugo 0.73.0" />
<meta name="generator" content="Hugo 0.74.1" />
@ -28,7 +28,7 @@
"@type": "Person",
"name": "Alan Orth"
},
"dateModified": "2020-07-01T10:53:54+03:00",
"dateModified": "2020-07-02T15:35:54+03:00",
"keywords": "notes,""migration,""notes,",
"description":"Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
}
@ -95,6 +95,27 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></h2>
<p class="blog-post-meta"><time datetime="2019-10-28T13:27:35+02:00">Mon Oct 28, 2019</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
<span class="fas fa-tag" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/tags/migration/" rel="tag">Migration</a>
</p>
</header>
<p>Possible changes to CGSpace metadata fields to align more with DC, QDC, and DCTERMS as well as CG Core v2.</p>
<p>With reference to <a href="https://agriculturalsemantics.github.io/cg-core/cgcore.html">CG Core v2 draft standard</a> by Marie-Angélique as well as <a href="http://www.dublincore.org/specifications/dublin-core/dcmi-terms/">DCMI DCTERMS</a>.</p>
<a href='https://alanorth.github.io/cgspace-notes/cgspace-cgcorev2-migration/'>Read more →</a>
</article>
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2019-10/">October, 2019</a></h2>
@ -394,40 +415,6 @@ sys 0m1.979s
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2019-01/">January, 2019</a></h2>
<p class="blog-post-meta"><time datetime="2019-01-02T09:48:30+02:00">Wed Jan 02, 2019</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2019-01-02">2019-01-02</h2>
<ul>
<li>Linode alerted that CGSpace (linode18) had a higher outbound traffic rate than normal early this morning</li>
<li>I don&rsquo;t see anything interesting in the web server logs around that time though:</li>
</ul>
<pre><code># zcat --force /var/log/nginx/*.log /var/log/nginx/*.log.1 | grep -E &quot;02/Jan/2019:0(1|2|3)&quot; | awk '{print $1}' | sort | uniq -c | sort -n | tail -n 10
92 40.77.167.4
99 210.7.29.100
120 38.126.157.45
177 35.237.175.180
177 40.77.167.32
216 66.249.75.219
225 18.203.76.93
261 46.101.86.248
357 207.46.13.1
903 54.70.40.11
</code></pre>
<a href='https://alanorth.github.io/cgspace-notes/2019-01/'>Read more →</a>
</article>
<nav class="blog-pagination">
<a class="btn btn-outline-primary" href="/cgspace-notes/posts/" rel="prev" role="button">Previous page</a>
@ -452,6 +439,8 @@ sys 0m1.979s
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-07/">August, 2020</a></li>
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
<li><a href="/cgspace-notes/2020-06/">June, 2020</a></li>
@ -460,8 +449,6 @@ sys 0m1.979s
<li><a href="/cgspace-notes/2020-04/">April, 2020</a></li>
<li><a href="/cgspace-notes/2020-03/">March, 2020</a></li>
</ol>
</section>

65
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@ -9,12 +9,12 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" />
<meta property="og:updated_time" content="2020-07-26T22:24:52+03:00" />
<meta property="og:updated_time" content="2020-07-27T20:07:52+03:00" />
<meta name="twitter:card" content="summary"/>
<meta name="twitter:title" content="Posts"/>
<meta name="twitter:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."/>
<meta name="generator" content="Hugo 0.73.0" />
<meta name="generator" content="Hugo 0.74.1" />
@ -28,7 +28,7 @@
"@type": "Person",
"name": "Alan Orth"
},
"dateModified": "2020-07-01T10:53:54+03:00",
"dateModified": "2020-07-02T15:35:54+03:00",
"keywords": "notes,""migration,""notes,",
"description":"Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
}
@ -95,6 +95,40 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2019-01/">January, 2019</a></h2>
<p class="blog-post-meta"><time datetime="2019-01-02T09:48:30+02:00">Wed Jan 02, 2019</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2019-01-02">2019-01-02</h2>
<ul>
<li>Linode alerted that CGSpace (linode18) had a higher outbound traffic rate than normal early this morning</li>
<li>I don&rsquo;t see anything interesting in the web server logs around that time though:</li>
</ul>
<pre><code># zcat --force /var/log/nginx/*.log /var/log/nginx/*.log.1 | grep -E &quot;02/Jan/2019:0(1|2|3)&quot; | awk '{print $1}' | sort | uniq -c | sort -n | tail -n 10
92 40.77.167.4
99 210.7.29.100
120 38.126.157.45
177 35.237.175.180
177 40.77.167.32
216 66.249.75.219
225 18.203.76.93
261 46.101.86.248
357 207.46.13.1
903 54.70.40.11
</code></pre>
<a href='https://alanorth.github.io/cgspace-notes/2019-01/'>Read more →</a>
</article>
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2018-12/">December, 2018</a></h2>
@ -341,27 +375,6 @@ sys 2m7.289s
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2018-03/">March, 2018</a></h2>
<p class="blog-post-meta"><time datetime="2018-03-02T16:07:54+02:00">Fri Mar 02, 2018</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2018-03-02">2018-03-02</h2>
<ul>
<li>Export a CSV of the IITA community metadata for Martin Mueller</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2018-03/'>Read more →</a>
</article>
<nav class="blog-pagination">
<a class="btn btn-outline-primary" href="/cgspace-notes/posts/page/2/" rel="prev" role="button">Previous page</a>
@ -386,6 +399,8 @@ sys 2m7.289s
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-07/">August, 2020</a></li>
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
<li><a href="/cgspace-notes/2020-06/">June, 2020</a></li>
@ -394,8 +409,6 @@ sys 2m7.289s
<li><a href="/cgspace-notes/2020-04/">April, 2020</a></li>
<li><a href="/cgspace-notes/2020-03/">March, 2020</a></li>
</ol>
</section>

49
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@ -9,12 +9,12 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" />
<meta property="og:updated_time" content="2020-07-26T22:24:52+03:00" />
<meta property="og:updated_time" content="2020-07-27T20:07:52+03:00" />
<meta name="twitter:card" content="summary"/>
<meta name="twitter:title" content="Posts"/>
<meta name="twitter:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."/>
<meta name="generator" content="Hugo 0.73.0" />
<meta name="generator" content="Hugo 0.74.1" />
@ -28,7 +28,7 @@
"@type": "Person",
"name": "Alan Orth"
},
"dateModified": "2020-07-01T10:53:54+03:00",
"dateModified": "2020-07-02T15:35:54+03:00",
"keywords": "notes,""migration,""notes,",
"description":"Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
}
@ -95,6 +95,27 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2018-03/">March, 2018</a></h2>
<p class="blog-post-meta"><time datetime="2018-03-02T16:07:54+02:00">Fri Mar 02, 2018</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2018-03-02">2018-03-02</h2>
<ul>
<li>Export a CSV of the IITA community metadata for Martin Mueller</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2018-03/'>Read more →</a>
</article>
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2018-02/">February, 2018</a></h2>
@ -396,24 +417,6 @@ COPY 54701
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2017-06/">June, 2017</a></h2>
<p class="blog-post-meta"><time datetime="2017-06-01T10:14:52+03:00">Thu Jun 01, 2017</time> by Alan Orth in
<span class="fas fa-tag" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/tags/notes/" rel="tag">Notes</a>
</p>
</header>
2017-06-01 After discussion with WLE and CGSpace content people, we decided to just add one metadata field for the WLE Research Themes The cg.identifier.wletheme field will be used for both Phase I and Phase II Research Themes Then we&rsquo;ll create a new sub-community for Phase II and create collections for the research themes there The current &ldquo;Research Themes&rdquo; community will be renamed to &ldquo;WLE Phase I Research Themes&rdquo; Tagged all items in the current Phase I collections with their appropriate themes Create pull request to add Phase II research themes to the submission form: #328 Add cg.
<a href='https://alanorth.github.io/cgspace-notes/2017-06/'>Read more →</a>
</article>
<nav class="blog-pagination">
<a class="btn btn-outline-primary" href="/cgspace-notes/posts/page/3/" rel="prev" role="button">Previous page</a>
@ -438,6 +441,8 @@ COPY 54701
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-07/">August, 2020</a></li>
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
<li><a href="/cgspace-notes/2020-06/">June, 2020</a></li>
@ -446,8 +451,6 @@ COPY 54701
<li><a href="/cgspace-notes/2020-04/">April, 2020</a></li>
<li><a href="/cgspace-notes/2020-03/">March, 2020</a></li>
</ol>
</section>

58
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@ -9,12 +9,12 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" />
<meta property="og:updated_time" content="2020-07-26T22:24:52+03:00" />
<meta property="og:updated_time" content="2020-07-27T20:07:52+03:00" />
<meta name="twitter:card" content="summary"/>
<meta name="twitter:title" content="Posts"/>
<meta name="twitter:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."/>
<meta name="generator" content="Hugo 0.73.0" />
<meta name="generator" content="Hugo 0.74.1" />
@ -28,7 +28,7 @@
"@type": "Person",
"name": "Alan Orth"
},
"dateModified": "2020-07-01T10:53:54+03:00",
"dateModified": "2020-07-02T15:35:54+03:00",
"keywords": "notes,""migration,""notes,",
"description":"Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
}
@ -95,6 +95,24 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2017-06/">June, 2017</a></h2>
<p class="blog-post-meta"><time datetime="2017-06-01T10:14:52+03:00">Thu Jun 01, 2017</time> by Alan Orth in
<span class="fas fa-tag" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/tags/notes/" rel="tag">Notes</a>
</p>
</header>
2017-06-01 After discussion with WLE and CGSpace content people, we decided to just add one metadata field for the WLE Research Themes The cg.identifier.wletheme field will be used for both Phase I and Phase II Research Themes Then we&rsquo;ll create a new sub-community for Phase II and create collections for the research themes there The current &ldquo;Research Themes&rdquo; community will be renamed to &ldquo;WLE Phase I Research Themes&rdquo; Tagged all items in the current Phase I collections with their appropriate themes Create pull request to add Phase II research themes to the submission form: #328 Add cg.
<a href='https://alanorth.github.io/cgspace-notes/2017-06/'>Read more →</a>
</article>
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2017-05/">May, 2017</a></h2>
@ -344,36 +362,6 @@ DELETE 1
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2016-08/">August, 2016</a></h2>
<p class="blog-post-meta"><time datetime="2016-08-01T15:53:00+03:00">Mon Aug 01, 2016</time> by Alan Orth in
<span class="fas fa-tag" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/tags/notes/" rel="tag">Notes</a>
</p>
</header>
<h2 id="2016-08-01">2016-08-01</h2>
<ul>
<li>Add updated distribution license from Sisay (<a href="https://github.com/ilri/DSpace/issues/259">#259</a>)</li>
<li>Play with upgrading Mirage 2 dependencies in <code>bower.json</code> because most are several versions of out date</li>
<li>Bootstrap is at 3.3.0 but upstream is at 3.3.7, and upgrading to anything beyond 3.3.1 breaks glyphicons and probably more</li>
<li>bower stuff is a dead end, waste of time, too many issues</li>
<li>Anything after Bootstrap 3.3.1 makes glyphicons disappear (HTTP 404 trying to access from incorrect path of <code>fonts</code>)</li>
<li>Start working on DSpace 5.1 → 5.5 port:</li>
</ul>
<pre><code>$ git checkout -b 55new 5_x-prod
$ git reset --hard ilri/5_x-prod
$ git rebase -i dspace-5.5
</code></pre>
<a href='https://alanorth.github.io/cgspace-notes/2016-08/'>Read more →</a>
</article>
<nav class="blog-pagination">
<a class="btn btn-outline-primary" href="/cgspace-notes/posts/page/4/" rel="prev" role="button">Previous page</a>
@ -398,6 +386,8 @@ $ git rebase -i dspace-5.5
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-07/">August, 2020</a></li>
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
<li><a href="/cgspace-notes/2020-06/">June, 2020</a></li>
@ -406,8 +396,6 @@ $ git rebase -i dspace-5.5
<li><a href="/cgspace-notes/2020-04/">April, 2020</a></li>
<li><a href="/cgspace-notes/2020-03/">March, 2020</a></li>
</ol>
</section>

40
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View File

@ -9,12 +9,12 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" />
<meta property="og:updated_time" content="2020-07-26T22:24:52+03:00" />
<meta property="og:updated_time" content="2020-07-27T20:07:52+03:00" />
<meta name="twitter:card" content="summary"/>
<meta name="twitter:title" content="Posts"/>
<meta name="twitter:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."/>
<meta name="generator" content="Hugo 0.73.0" />
<meta name="generator" content="Hugo 0.74.1" />
@ -28,7 +28,7 @@
"@type": "Person",
"name": "Alan Orth"
},
"dateModified": "2020-07-01T10:53:54+03:00",
"dateModified": "2020-07-02T15:35:54+03:00",
"keywords": "notes,""migration,""notes,",
"description":"Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
}
@ -95,6 +95,36 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2016-08/">August, 2016</a></h2>
<p class="blog-post-meta"><time datetime="2016-08-01T15:53:00+03:00">Mon Aug 01, 2016</time> by Alan Orth in
<span class="fas fa-tag" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/tags/notes/" rel="tag">Notes</a>
</p>
</header>
<h2 id="2016-08-01">2016-08-01</h2>
<ul>
<li>Add updated distribution license from Sisay (<a href="https://github.com/ilri/DSpace/issues/259">#259</a>)</li>
<li>Play with upgrading Mirage 2 dependencies in <code>bower.json</code> because most are several versions of out date</li>
<li>Bootstrap is at 3.3.0 but upstream is at 3.3.7, and upgrading to anything beyond 3.3.1 breaks glyphicons and probably more</li>
<li>bower stuff is a dead end, waste of time, too many issues</li>
<li>Anything after Bootstrap 3.3.1 makes glyphicons disappear (HTTP 404 trying to access from incorrect path of <code>fonts</code>)</li>
<li>Start working on DSpace 5.1 → 5.5 port:</li>
</ul>
<pre><code>$ git checkout -b 55new 5_x-prod
$ git reset --hard ilri/5_x-prod
$ git rebase -i dspace-5.5
</code></pre>
<a href='https://alanorth.github.io/cgspace-notes/2016-08/'>Read more →</a>
</article>
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2016-07/">July, 2016</a></h2>
@ -353,6 +383,8 @@ dspacetest=# select text_value from metadatavalue where metadata_field_id=3 and
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-07/">August, 2020</a></li>
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
<li><a href="/cgspace-notes/2020-06/">June, 2020</a></li>
@ -361,8 +393,6 @@ dspacetest=# select text_value from metadatavalue where metadata_field_id=3 and
<li><a href="/cgspace-notes/2020-04/">April, 2020</a></li>
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3
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@ -142,8 +144,6 @@
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@ -392,8 +394,6 @@ DELETE 1
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@ -370,6 +370,8 @@ dspacetest=# select text_value from metadatavalue where metadata_field_id=3 and
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<li><a href="/cgspace-notes/2020-07/">August, 2020</a></li>
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@ -378,8 +380,6 @@ dspacetest=# select text_value from metadatavalue where metadata_field_id=3 and
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