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Update notes for 2020-07-27

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Alan Orth 2020-07-27 20:07:52 +03:00
parent cdd4a664c6
commit 99ec5f167f
Signed by: alanorth
GPG Key ID: 0FB860CC9C45B1B9
20 changed files with 87 additions and 25 deletions
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33
content/posts/2020-07.md
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@ -824,4 +824,37 @@ $ chrt -b 0 ./run.sh -s http://localhost:8081/solr/statistics-2019 -a export -o
$ dspace dsrun com.atmire.statistics.util.update.atomic.AtomicStatisticsUpdateCLI -c statistics -f -t 12
```
- This one failed after a few hours:
```
Record uid: c4b5974a-025d-4adc-b6c3-c8846048b62b couldn't be processed
com.atmire.statistics.util.update.atomic.ProcessingException: something went wrong while processing record uid: c4b5974a-025d-4adc-b6c3-c8846048b62b, an error occured in the com.atmire.statistics.util.update.atomic.processor.ContainerOwnerDBProcessor
at com.atmire.statistics.util.update.atomic.AtomicStatisticsUpdater.applyProcessors(SourceFile:304)
at com.atmire.statistics.util.update.atomic.AtomicStatisticsUpdater.processRecords(SourceFile:176)
at com.atmire.statistics.util.update.atomic.AtomicStatisticsUpdater.performRun(SourceFile:161)
at com.atmire.statistics.util.update.atomic.AtomicStatisticsUpdater.update(SourceFile:128)
at com.atmire.statistics.util.update.atomic.AtomicStatisticsUpdateCLI.main(SourceFile:78)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.dspace.app.launcher.ScriptLauncher.runOneCommand(ScriptLauncher.java:229)
at org.dspace.app.launcher.ScriptLauncher.main(ScriptLauncher.java:81)
Caused by: java.lang.NullPointerException
Run 2 — 100% — 2,237,670/2,239,523 docs — 12s — 2h 25m 41s
Run 2 took 2h 25m 41s
179,310 docs failed to process
If run the update again with the resume option (-r) they will be reattempted
```
- I started the same script for the statistics-2019 core (12 million records...)
- Update an ILRI author's name on CGSpace:
```
$ ./fix-metadata-values.py -i /tmp/2020-07-27-fix-ILRI-author.csv -db dspace -u cgspace -p 'fuuu' -f dc.contributor.author -t 'correct' -m 3
Fixed 13 occurences of: Muloi, D.
Fixed 4 occurences of: Muloi, D.M.
```
<!-- vim: set sw=2 ts=2: -->

35
docs/2020-07/index.html
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@ -20,7 +20,7 @@ Since I was restarting Tomcat anyways I decided to redeploy the latest changes f
<meta property="og:type" content="article" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/2020-07/" />
<meta property="article:published_time" content="2020-07-01T10:53:54+03:00" />
<meta property="article:modified_time" content="2020-07-24T23:23:15+03:00" />
<meta property="article:modified_time" content="2020-07-26T22:24:52+03:00" />
<meta name="twitter:card" content="summary"/>
<meta name="twitter:title" content="July, 2020"/>
@ -45,9 +45,9 @@ Since I was restarting Tomcat anyways I decided to redeploy the latest changes f
"@type": "BlogPosting",
"headline": "July, 2020",
"url": "https://alanorth.github.io/cgspace-notes/2020-07/",
"wordCount": "5045",
"wordCount": "5184",
"datePublished": "2020-07-01T10:53:54+03:00",
"dateModified": "2020-07-24T23:23:15+03:00",
"dateModified": "2020-07-26T22:24:52+03:00",
"author": {
"@type": "Person",
"name": "Alan Orth"
@ -1034,6 +1034,35 @@ mailto\:team@impactstory\.org
</li>
</ul>
<pre><code>$ dspace dsrun com.atmire.statistics.util.update.atomic.AtomicStatisticsUpdateCLI -c statistics -f -t 12
</code></pre><ul>
<li>This one failed after a few hours:</li>
</ul>
<pre><code>Record uid: c4b5974a-025d-4adc-b6c3-c8846048b62b couldn't be processed
com.atmire.statistics.util.update.atomic.ProcessingException: something went wrong while processing record uid: c4b5974a-025d-4adc-b6c3-c8846048b62b, an error occured in the com.atmire.statistics.util.update.atomic.processor.ContainerOwnerDBProcessor
at com.atmire.statistics.util.update.atomic.AtomicStatisticsUpdater.applyProcessors(SourceFile:304)
at com.atmire.statistics.util.update.atomic.AtomicStatisticsUpdater.processRecords(SourceFile:176)
at com.atmire.statistics.util.update.atomic.AtomicStatisticsUpdater.performRun(SourceFile:161)
at com.atmire.statistics.util.update.atomic.AtomicStatisticsUpdater.update(SourceFile:128)
at com.atmire.statistics.util.update.atomic.AtomicStatisticsUpdateCLI.main(SourceFile:78)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.dspace.app.launcher.ScriptLauncher.runOneCommand(ScriptLauncher.java:229)
at org.dspace.app.launcher.ScriptLauncher.main(ScriptLauncher.java:81)
Caused by: java.lang.NullPointerException
Run 2 — 100% — 2,237,670/2,239,523 docs — 12s — 2h 25m 41s
Run 2 took 2h 25m 41s
179,310 docs failed to process
If run the update again with the resume option (-r) they will be reattempted
</code></pre><ul>
<li>I started the same script for the statistics-2019 core (12 million records&hellip;)</li>
<li>Update an ILRI author&rsquo;s name on CGSpace:</li>
</ul>
<pre><code>$ ./fix-metadata-values.py -i /tmp/2020-07-27-fix-ILRI-author.csv -db dspace -u cgspace -p 'fuuu' -f dc.contributor.author -t 'correct' -m 3
Fixed 13 occurences of: Muloi, D.
Fixed 4 occurences of: Muloi, D.M.
</code></pre><!-- raw HTML omitted -->

2
docs/categories/index.html
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@ -9,7 +9,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/" />
<meta property="og:updated_time" content="2020-07-24T23:23:15+03:00" />
<meta property="og:updated_time" content="2020-07-26T22:24:52+03:00" />
<meta name="twitter:card" content="summary"/>
<meta name="twitter:title" content="Categories"/>

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@ -9,7 +9,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/notes/" />
<meta property="og:updated_time" content="2020-07-24T23:23:15+03:00" />
<meta property="og:updated_time" content="2020-07-26T22:24:52+03:00" />
<meta name="twitter:card" content="summary"/>
<meta name="twitter:title" content="Notes"/>

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@ -9,7 +9,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/notes/" />
<meta property="og:updated_time" content="2020-07-24T23:23:15+03:00" />
<meta property="og:updated_time" content="2020-07-26T22:24:52+03:00" />
<meta name="twitter:card" content="summary"/>
<meta name="twitter:title" content="Notes"/>

2
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@ -9,7 +9,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/notes/" />
<meta property="og:updated_time" content="2020-07-24T23:23:15+03:00" />
<meta property="og:updated_time" content="2020-07-26T22:24:52+03:00" />
<meta name="twitter:card" content="summary"/>
<meta name="twitter:title" content="Notes"/>

2
docs/categories/notes/page/4/index.html
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@ -9,7 +9,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/notes/" />
<meta property="og:updated_time" content="2020-07-24T23:23:15+03:00" />
<meta property="og:updated_time" content="2020-07-26T22:24:52+03:00" />
<meta name="twitter:card" content="summary"/>
<meta name="twitter:title" content="Notes"/>

2
docs/index.html
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@ -9,7 +9,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />
<meta property="og:updated_time" content="2020-07-24T23:23:15+03:00" />
<meta property="og:updated_time" content="2020-07-26T22:24:52+03:00" />
<meta name="twitter:card" content="summary"/>
<meta name="twitter:title" content="CGSpace Notes"/>

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@ -9,7 +9,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />
<meta property="og:updated_time" content="2020-07-24T23:23:15+03:00" />
<meta property="og:updated_time" content="2020-07-26T22:24:52+03:00" />
<meta name="twitter:card" content="summary"/>
<meta name="twitter:title" content="CGSpace Notes"/>

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@ -9,7 +9,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />
<meta property="og:updated_time" content="2020-07-24T23:23:15+03:00" />
<meta property="og:updated_time" content="2020-07-26T22:24:52+03:00" />
<meta name="twitter:card" content="summary"/>
<meta name="twitter:title" content="CGSpace Notes"/>

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@ -9,7 +9,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />
<meta property="og:updated_time" content="2020-07-24T23:23:15+03:00" />
<meta property="og:updated_time" content="2020-07-26T22:24:52+03:00" />
<meta name="twitter:card" content="summary"/>
<meta name="twitter:title" content="CGSpace Notes"/>

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@ -9,7 +9,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />
<meta property="og:updated_time" content="2020-07-24T23:23:15+03:00" />
<meta property="og:updated_time" content="2020-07-26T22:24:52+03:00" />
<meta name="twitter:card" content="summary"/>
<meta name="twitter:title" content="CGSpace Notes"/>

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@ -9,7 +9,7 @@
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<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />
<meta property="og:updated_time" content="2020-07-24T23:23:15+03:00" />
<meta property="og:updated_time" content="2020-07-26T22:24:52+03:00" />
<meta name="twitter:card" content="summary"/>
<meta name="twitter:title" content="CGSpace Notes"/>

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@ -9,7 +9,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
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@ -9,7 +9,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
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@ -9,7 +9,7 @@
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@ -9,7 +9,7 @@
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@ -9,7 +9,7 @@
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@ -9,7 +9,7 @@
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<meta name="twitter:title" content="Posts"/>

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@ -4,27 +4,27 @@
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