alanorth/cgspace-notes
1
0
Fork 0
mirror of https://github.com/alanorth/cgspace-notes.git synced 2024-12-22 05:02:19 +01:00
Code Issues Projects Releases Wiki Activity

Add notes for 2022-01-09

Browse Source
This commit is contained in:
Alan Orth 2022-01-12 19:55:47 +02:00
parent 0ed959e085
commit 69f733f2be
Signed by: alanorth
GPG Key ID: 0FB860CC9C45B1B9
29 changed files with 120 additions and 36 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

39
content/posts/2022-01.md
View File

@ -24,4 +24,43 @@ dc.contributor.author,cg.creator.identifier
$ ./ilri/add-orcid-identifiers-csv.py -i 2022-01-06-add-orcids.csv -db dspace63 -u dspacetest -p 'dom@in34sniper'
```
## 2022-01-09
- Validate and register CGSpace on [OpenArchives](https://www.openarchives.org/Register/ValidateSite?log=Z2V7WCT7)
- Last month IWMI colleagues were asking me to look into this, and after checking the OpenArchives mailing list it seems there was a problem on the server side
- Now it has worked and the message is "Successfully updated OAI registration database to status COMPLIANT."
- I received an email (as the Admin contact on our OAI) that says:
> Your repository has been registered in the OAI database of conforming repositories.
- Now I'm taking a screenshot of the validation page for posterity, because the logs seem to go away after some time
![OpenArchives.org registration](/cgspace-notes/2022/01/openarchives-registration.png)
- I tried to re-build the Docker image for OpenRXV and got an error in the backend:
```console
...
> openrxv-backend@0.0.1 build
> nest build
node_modules/@elastic/elasticsearch/api/types.d.ts:2454:13 - error TS2456: Type alias 'AggregationsAggregate' circularly references itself.
2454 export type AggregationsAggregate = AggregationsSingleBucketAggregate | AggregationsAutoDateHistogramAggregate | AggregationsFiltersAggregate | AggregationsSignificantTermsAggregate<any> | AggregationsTermsAggregate<any> | AggregationsBucketAggregate | AggregationsCompositeBucketAggregate | AggregationsMultiBucketAggregate<AggregationsBucket> | AggregationsMatrixStatsAggregate | AggregationsKeyedValueAggregate | AggregationsMetricAggregate
~~~~~~~~~~~~~~~~~~~~~
node_modules/@elastic/elasticsearch/api/types.d.ts:3209:13 - error TS2456: Type alias 'AggregationsSingleBucketAggregate' circularly references itself.
3209 export type AggregationsSingleBucketAggregate = AggregationsSingleBucketAggregateKeys
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Found 2 error(s).
```
- Ah, it seems the code on the server was slightly out of date
- I checked out the latest master branch and it built
## 2022-01-12
- Fix some citation formatting issues in Gaia's [eighteen CAS Green Cover publications on DSpace Test](https://dspacetest.cgiar.org/handle/10568/115230)
<!-- vim: set sw=2 ts=2: -->

6
docs/2021-12/index.html
View File

@ -22,7 +22,7 @@ Total number of bot hits purged: 3679
<meta property="og:type" content="article" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/2021-12/" />
<meta property="article:published_time" content="2021-12-01T16:07:07+02:00" />
<meta property="article:modified_time" content="2021-12-29T16:29:37+02:00" />
<meta property="article:modified_time" content="2022-01-09T10:39:51+02:00" />
@ -52,7 +52,7 @@ Total number of bot hits purged: 3679
"url": "https://alanorth.github.io/cgspace-notes/2021-12/",
"wordCount": "2686",
"datePublished": "2021-12-01T16:07:07+02:00",
"dateModified": "2021-12-29T16:29:37+02:00",
"dateModified": "2022-01-09T10:39:51+02:00",
"author": {
"@type": "Person",
"name": "Alan Orth"
@ -381,7 +381,7 @@ node_modules/@elastic/elasticsearch/api/types.d.ts:3209:13 - error TS2456: Type
</li>
<li>Now I cleared all images on my local machine and I get the same error when building the backend
<ul>
<li>It seems to be related to <code>@elastic/elasticsearch-js</code>](<a href="https://github.com/elastic/elasticsearch-js)">https://github.com/elastic/elasticsearch-js)</a>, which our <code>package.json</code> pins with version `^7.13.0&quot;</li>
<li>It seems to be related to <code>@elastic/elasticsearch-js</code>](<a href="https://github.com/elastic/elasticsearch-js)">https://github.com/elastic/elasticsearch-js)</a>, which our <code>package.json</code> pins with version <code>^7.13.0</code></li>
<li>I see that AReS is currently using 7.15.0 in its <code>package-lock.json</code>, and 7.16.0 was released four days ago so perhaps it&rsquo;s that&hellip;</li>
<li>Pinning <code>~7.15.0</code> allows nest to build fine&hellip;</li>
<li>I made a pull request</li>

53
docs/2022-01/index.html
View File

@ -14,7 +14,7 @@ Start a full harvest on AReS
<meta property="og:type" content="article" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/2022-01/" />
<meta property="article:published_time" content="2022-01-01T15:20:54+02:00" />
<meta property="article:modified_time" content="2022-01-01T15:21:32+02:00" />
<meta property="article:modified_time" content="2022-01-06T15:48:27+02:00" />
@ -34,9 +34,9 @@ Start a full harvest on AReS
"@type": "BlogPosting",
"headline": "January, 2022",
"url": "https://alanorth.github.io/cgspace-notes/2022-01/",
"wordCount": "47",
"wordCount": "263",
"datePublished": "2022-01-01T15:20:54+02:00",
"dateModified": "2022-01-01T15:21:32+02:00",
"dateModified": "2022-01-06T15:48:27+02:00",
"author": {
"@type": "Person",
"name": "Alan Orth"
@ -127,7 +127,52 @@ dc.contributor.author,cg.creator.identifier
&#34;Jones, Chris&#34;,&#34;Chris Jones: 0000-0001-9096-9728&#34;
&#34;Jones, Christopher S.&#34;,&#34;Chris Jones: 0000-0001-9096-9728&#34;
$ ./ilri/add-orcid-identifiers-csv.py -i 2022-01-06-add-orcids.csv -db dspace63 -u dspacetest -p <span style="color:#e6db74">&#39;dom@in34sniper&#39;</span>
</code></pre></div><!-- raw HTML omitted -->
</code></pre></div><h2 id="2022-01-09">2022-01-09</h2>
<ul>
<li>Validate and register CGSpace on <a href="https://www.openarchives.org/Register/ValidateSite?log=Z2V7WCT7">OpenArchives</a>
<ul>
<li>Last month IWMI colleagues were asking me to look into this, and after checking the OpenArchives mailing list it seems there was a problem on the server side</li>
<li>Now it has worked and the message is &ldquo;Successfully updated OAI registration database to status COMPLIANT.&rdquo;</li>
<li>I received an email (as the Admin contact on our OAI) that says:</li>
</ul>
</li>
</ul>
<blockquote>
<p>Your repository has been registered in the OAI database of conforming repositories.</p>
</blockquote>
<ul>
<li>Now I&rsquo;m taking a screenshot of the validation page for posterity, because the logs seem to go away after some time</li>
</ul>
<p><img src="/cgspace-notes/2022/01/openarchives-registration.png" alt="OpenArchives.org registration"></p>
<ul>
<li>I tried to re-build the Docker image for OpenRXV and got an error in the backend:</li>
</ul>
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4"><code class="language-console" data-lang="console">...
&gt; openrxv-backend@0.0.1 build
&gt; nest build
<span style="color:#960050;background-color:#1e0010">
</span><span style="color:#960050;background-color:#1e0010"></span>node_modules/@elastic/elasticsearch/api/types.d.ts:2454:13 - error TS2456: Type alias &#39;AggregationsAggregate&#39; circularly references itself.
<span style="color:#960050;background-color:#1e0010">
</span><span style="color:#960050;background-color:#1e0010"></span>2454 export type AggregationsAggregate = AggregationsSingleBucketAggregate | AggregationsAutoDateHistogramAggregate | AggregationsFiltersAggregate | AggregationsSignificantTermsAggregate&lt;any&gt; | AggregationsTermsAggregate&lt;any&gt; | AggregationsBucketAggregate | AggregationsCompositeBucketAggregate | AggregationsMultiBucketAggregate&lt;AggregationsBucket&gt; | AggregationsMatrixStatsAggregate | AggregationsKeyedValueAggregate | AggregationsMetricAggregate
~~~~~~~~~~~~~~~~~~~~~
node_modules/@elastic/elasticsearch/api/types.d.ts:3209:13 - error TS2456: Type alias &#39;AggregationsSingleBucketAggregate&#39; circularly references itself.
<span style="color:#960050;background-color:#1e0010">
</span><span style="color:#960050;background-color:#1e0010"></span>3209 export type AggregationsSingleBucketAggregate = AggregationsSingleBucketAggregateKeys
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<span style="color:#960050;background-color:#1e0010">
</span><span style="color:#960050;background-color:#1e0010"></span>Found 2 error(s).
</code></pre></div><ul>
<li>Ah, it seems the code on the server was slightly out of date
<ul>
<li>I checked out the latest master branch and it built</li>
</ul>
</li>
</ul>
<h2 id="2022-01-12">2022-01-12</h2>
<ul>
<li>Fix some citation formatting issues in Gaia&rsquo;s <a href="https://dspacetest.cgiar.org/handle/10568/115230">eighteen CAS Green Cover publications on DSpace Test</a></li>
</ul>
<!-- raw HTML omitted -->

BIN
docs/2022/01/openarchives-registration.png Normal file
View File

Binary file not shown.
Side by Side

After

Width:  |  Height:  |  Size: 249 KiB

2
docs/categories/index.html
View File

@ -10,7 +10,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/" />
<meta property="og:updated_time" content="2022-01-01T15:21:32+02:00" />
<meta property="og:updated_time" content="2022-01-09T10:39:51+02:00" />

2
docs/categories/notes/index.html
View File

@ -10,7 +10,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/notes/" />
<meta property="og:updated_time" content="2022-01-01T15:21:32+02:00" />
<meta property="og:updated_time" content="2022-01-09T10:39:51+02:00" />

2
docs/categories/notes/page/2/index.html
View File

@ -10,7 +10,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/notes/" />
<meta property="og:updated_time" content="2022-01-01T15:21:32+02:00" />
<meta property="og:updated_time" content="2022-01-09T10:39:51+02:00" />

2
docs/categories/notes/page/3/index.html
View File

@ -10,7 +10,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/notes/" />
<meta property="og:updated_time" content="2022-01-01T15:21:32+02:00" />
<meta property="og:updated_time" content="2022-01-09T10:39:51+02:00" />

2
docs/categories/notes/page/4/index.html
View File

@ -10,7 +10,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/notes/" />
<meta property="og:updated_time" content="2022-01-01T15:21:32+02:00" />
<meta property="og:updated_time" content="2022-01-09T10:39:51+02:00" />

2
docs/categories/notes/page/5/index.html
View File

@ -10,7 +10,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/notes/" />
<meta property="og:updated_time" content="2022-01-01T15:21:32+02:00" />
<meta property="og:updated_time" content="2022-01-09T10:39:51+02:00" />

2
docs/categories/notes/page/6/index.html
View File

@ -10,7 +10,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/notes/" />
<meta property="og:updated_time" content="2022-01-01T15:21:32+02:00" />
<meta property="og:updated_time" content="2022-01-09T10:39:51+02:00" />

2
docs/index.html
View File

@ -10,7 +10,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />
<meta property="og:updated_time" content="2022-01-01T15:21:32+02:00" />
<meta property="og:updated_time" content="2022-01-09T10:39:51+02:00" />

2
docs/page/2/index.html
View File

@ -10,7 +10,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />
<meta property="og:updated_time" content="2022-01-01T15:21:32+02:00" />
<meta property="og:updated_time" content="2022-01-09T10:39:51+02:00" />

2
docs/page/3/index.html
View File

@ -10,7 +10,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />
<meta property="og:updated_time" content="2022-01-01T15:21:32+02:00" />
<meta property="og:updated_time" content="2022-01-09T10:39:51+02:00" />

2
docs/page/4/index.html
View File

@ -10,7 +10,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />
<meta property="og:updated_time" content="2022-01-01T15:21:32+02:00" />
<meta property="og:updated_time" content="2022-01-09T10:39:51+02:00" />

2
docs/page/5/index.html
View File

@ -10,7 +10,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />
<meta property="og:updated_time" content="2022-01-01T15:21:32+02:00" />
<meta property="og:updated_time" content="2022-01-09T10:39:51+02:00" />

2
docs/page/6/index.html
View File

@ -10,7 +10,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />
<meta property="og:updated_time" content="2022-01-01T15:21:32+02:00" />
<meta property="og:updated_time" content="2022-01-09T10:39:51+02:00" />

2
docs/page/7/index.html
View File

@ -10,7 +10,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />
<meta property="og:updated_time" content="2022-01-01T15:21:32+02:00" />
<meta property="og:updated_time" content="2022-01-09T10:39:51+02:00" />

2
docs/page/8/index.html
View File

@ -10,7 +10,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />
<meta property="og:updated_time" content="2022-01-01T15:21:32+02:00" />
<meta property="og:updated_time" content="2022-01-09T10:39:51+02:00" />

2
docs/posts/index.html
View File

@ -10,7 +10,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" />
<meta property="og:updated_time" content="2022-01-01T15:21:32+02:00" />
<meta property="og:updated_time" content="2022-01-09T10:39:51+02:00" />

2
docs/posts/page/2/index.html
View File

@ -10,7 +10,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" />
<meta property="og:updated_time" content="2022-01-01T15:21:32+02:00" />
<meta property="og:updated_time" content="2022-01-09T10:39:51+02:00" />

2
docs/posts/page/3/index.html
View File

@ -10,7 +10,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" />
<meta property="og:updated_time" content="2022-01-01T15:21:32+02:00" />
<meta property="og:updated_time" content="2022-01-09T10:39:51+02:00" />

2
docs/posts/page/4/index.html
View File

@ -10,7 +10,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" />
<meta property="og:updated_time" content="2022-01-01T15:21:32+02:00" />
<meta property="og:updated_time" content="2022-01-09T10:39:51+02:00" />

2
docs/posts/page/5/index.html
View File

@ -10,7 +10,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" />
<meta property="og:updated_time" content="2022-01-01T15:21:32+02:00" />
<meta property="og:updated_time" content="2022-01-09T10:39:51+02:00" />

2
docs/posts/page/6/index.html
View File

@ -10,7 +10,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" />
<meta property="og:updated_time" content="2022-01-01T15:21:32+02:00" />
<meta property="og:updated_time" content="2022-01-09T10:39:51+02:00" />

2
docs/posts/page/7/index.html
View File

@ -10,7 +10,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" />
<meta property="og:updated_time" content="2022-01-01T15:21:32+02:00" />
<meta property="og:updated_time" content="2022-01-09T10:39:51+02:00" />

2
docs/posts/page/8/index.html
View File

@ -10,7 +10,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" />
<meta property="og:updated_time" content="2022-01-01T15:21:32+02:00" />
<meta property="og:updated_time" content="2022-01-09T10:39:51+02:00" />

12
docs/sitemap.xml
View File

@ -3,22 +3,22 @@
xmlns:xhtml="http://www.w3.org/1999/xhtml">
<url>
<loc>https://alanorth.github.io/cgspace-notes/categories/</loc>
<lastmod>2022-01-01T15:21:32+02:00</lastmod>
<lastmod>2022-01-09T10:39:51+02:00</lastmod>
</url><url>
<loc>https://alanorth.github.io/cgspace-notes/</loc>
<lastmod>2022-01-01T15:21:32+02:00</lastmod>
<lastmod>2022-01-09T10:39:51+02:00</lastmod>
</url><url>
<loc>https://alanorth.github.io/cgspace-notes/2022-01/</loc>
<lastmod>2022-01-01T15:21:32+02:00</lastmod>
<lastmod>2022-01-06T15:48:27+02:00</lastmod>
</url><url>
<loc>https://alanorth.github.io/cgspace-notes/categories/notes/</loc>
<lastmod>2022-01-01T15:21:32+02:00</lastmod>
<lastmod>2022-01-09T10:39:51+02:00</lastmod>
</url><url>
<loc>https://alanorth.github.io/cgspace-notes/posts/</loc>
<lastmod>2022-01-01T15:21:32+02:00</lastmod>
<lastmod>2022-01-09T10:39:51+02:00</lastmod>
</url><url>
<loc>https://alanorth.github.io/cgspace-notes/2021-12/</loc>
<lastmod>2021-12-29T16:29:37+02:00</lastmod>
<lastmod>2022-01-09T10:39:51+02:00</lastmod>
</url><url>
<loc>https://alanorth.github.io/cgspace-notes/2021-11/</loc>
<lastmod>2021-11-30T16:44:30+02:00</lastmod>

BIN
static/2022/01/openarchives-registration.png Normal file
View File

Binary file not shown.
Side by Side

After

Width:  |  Height:  |  Size: 249 KiB