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Update notes for 2018-07-09
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@ -147,9 +147,37 @@ Caused by: java.lang.RuntimeException: Failed to startup the DSpace Service Mana
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- I wonder if I should convert some of the cron jobs to systemd services / timers...
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- I sent a note to all our users on Yammer to ask them about possible maintenance on Sunday, July 14th
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- Abenet wants to be able to search by journal title (dc.source) in the advanced Discovery search so I opened an issue for it ([#384](https://github.com/ilri/DSpace/issues/384))
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- I regenerated the list of names for all our ORCID iDs using my [resolve-orcids.py](https://gist.github.com/alanorth/57a88379126d844563c1410bd7b8d12b) script:
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## 2018-07-08
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```
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$ grep -oE '[A-Z0-9]{4}-[A-Z0-9]{4}-[A-Z0-9]{4}-[A-Z0-9]{4}' ~/src/git/DSpace/dspace/config/controlled-vocabularies/cg-creator-id.xml | sort | uniq > /tmp/2018-07-08-orcids.txt
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$ ./resolve-orcids.py -i /tmp/2018-07-08-orcids.txt -o /tmp/2018-07-08-names.txt -d
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```
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- But after comparing to the existing list of names I didn't see much change, so I just ignored it
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## 2018-07-09
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- Uptime Robot said that CGSpace was down for two minutes early this morning but I don't see anything in Tomcat logs or dmesg
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- Uptime Robot said that CGSpace was down for two minutes again later in the day, and this time I saw a memory error in Tomcat's `catalina.out`:
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```
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Exception in thread "http-bio-127.0.0.1-8081-exec-557" java.lang.OutOfMemoryError: Java heap space
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```
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- I'm not sure if it's the same error, but I see this in DSpace's `solr.log`:
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```
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2018-07-09 06:25:09,913 ERROR org.apache.solr.servlet.SolrDispatchFilter @ null:java.lang.RuntimeException: java.lang.OutOfMemoryError: Java heap space
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```
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- I see a strange error around that time in `dspace.log.2018-07-08`:
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```
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2018-07-09 06:23:43,510 ERROR com.atmire.statistics.SolrLogThread @ IOException occured when talking to server at: http://localhost:8081/solr/statistics
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org.apache.solr.client.solrj.SolrServerException: IOException occured when talking to server at: http://localhost:8081/solr/statistics
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```
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- But not sure what caused that...
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<!-- vim: set sw=2 ts=2: -->
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@ -30,7 +30,7 @@ There is insufficient memory for the Java Runtime Environment to continue.
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<meta property="article:published_time" content="2018-07-01T12:56:54+03:00"/>
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<meta property="article:modified_time" content="2018-07-08T23:20:36+03:00"/>
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<meta property="article:modified_time" content="2018-07-09T07:51:04+03:00"/>
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@ -71,9 +71,9 @@ There is insufficient memory for the Java Runtime Environment to continue.
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"@type": "BlogPosting",
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"headline": "July, 2018",
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"url": "https://alanorth.github.io/cgspace-notes/2018-07/",
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"wordCount": "1064",
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"wordCount": "1213",
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"datePublished": "2018-07-01T12:56:54+03:00",
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"dateModified": "2018-07-08T23:20:36+03:00",
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"dateModified": "2018-07-09T07:51:04+03:00",
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"author": {
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"@type": "Person",
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"name": "Alan Orth"
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@ -304,12 +304,44 @@ Caused by: java.lang.RuntimeException: Failed to startup the DSpace Service Mana
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<li>I wonder if I should convert some of the cron jobs to systemd services / timers…</li>
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<li>I sent a note to all our users on Yammer to ask them about possible maintenance on Sunday, July 14th</li>
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<li>Abenet wants to be able to search by journal title (dc.source) in the advanced Discovery search so I opened an issue for it (<a href="https://github.com/ilri/DSpace/issues/384">#384</a>)</li>
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<li>I regenerated the list of names for all our ORCID iDs using my <a href="https://gist.github.com/alanorth/57a88379126d844563c1410bd7b8d12b">resolve-orcids.py</a> script:</li>
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</ul>
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<h2 id="2018-07-08-1">2018-07-08</h2>
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<pre><code>$ grep -oE '[A-Z0-9]{4}-[A-Z0-9]{4}-[A-Z0-9]{4}-[A-Z0-9]{4}' ~/src/git/DSpace/dspace/config/controlled-vocabularies/cg-creator-id.xml | sort | uniq > /tmp/2018-07-08-orcids.txt
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$ ./resolve-orcids.py -i /tmp/2018-07-08-orcids.txt -o /tmp/2018-07-08-names.txt -d
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</code></pre>
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<ul>
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<li>But after comparing to the existing list of names I didn’t see much change, so I just ignored it</li>
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</ul>
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<h2 id="2018-07-09">2018-07-09</h2>
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<ul>
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<li>Uptime Robot said that CGSpace was down for two minutes early this morning but I don’t see anything in Tomcat logs or dmesg</li>
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<li>Uptime Robot said that CGSpace was down for two minutes again later in the day, and this time I saw a memory error in Tomcat’s <code>catalina.out</code>:</li>
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</ul>
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<pre><code>Exception in thread "http-bio-127.0.0.1-8081-exec-557" java.lang.OutOfMemoryError: Java heap space
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</code></pre>
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<ul>
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<li>I’m not sure if it’s the same error, but I see this in DSpace’s <code>solr.log</code>:</li>
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</ul>
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<pre><code>2018-07-09 06:25:09,913 ERROR org.apache.solr.servlet.SolrDispatchFilter @ null:java.lang.RuntimeException: java.lang.OutOfMemoryError: Java heap space
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</code></pre>
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<ul>
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<li>I see a strange error around that time in <code>dspace.log.2018-07-08</code>:</li>
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</ul>
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<pre><code>2018-07-09 06:23:43,510 ERROR com.atmire.statistics.SolrLogThread @ IOException occured when talking to server at: http://localhost:8081/solr/statistics
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org.apache.solr.client.solrj.SolrServerException: IOException occured when talking to server at: http://localhost:8081/solr/statistics
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</code></pre>
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<ul>
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<li>But not sure what caused that…</li>
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</ul>
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<!-- vim: set sw=2 ts=2: -->
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@ -4,7 +4,7 @@
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<url>
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<loc>https://alanorth.github.io/cgspace-notes/2018-07/</loc>
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<lastmod>2018-07-08T23:20:36+03:00</lastmod>
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<lastmod>2018-07-09T07:51:04+03:00</lastmod>
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</url>
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<url>
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@ -174,7 +174,7 @@
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<url>
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<loc>https://alanorth.github.io/cgspace-notes/</loc>
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<lastmod>2018-07-08T23:20:36+03:00</lastmod>
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<lastmod>2018-07-09T07:51:04+03:00</lastmod>
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<priority>0</priority>
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</url>
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@ -185,7 +185,7 @@
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<url>
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<loc>https://alanorth.github.io/cgspace-notes/tags/notes/</loc>
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<lastmod>2018-07-08T23:20:36+03:00</lastmod>
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<lastmod>2018-07-09T07:51:04+03:00</lastmod>
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<priority>0</priority>
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</url>
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@ -197,13 +197,13 @@
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<url>
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<loc>https://alanorth.github.io/cgspace-notes/posts/</loc>
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<lastmod>2018-07-08T23:20:36+03:00</lastmod>
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<lastmod>2018-07-09T07:51:04+03:00</lastmod>
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<priority>0</priority>
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</url>
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<url>
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<loc>https://alanorth.github.io/cgspace-notes/tags/</loc>
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<lastmod>2018-07-08T23:20:36+03:00</lastmod>
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<lastmod>2018-07-09T07:51:04+03:00</lastmod>
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<priority>0</priority>
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</url>
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