diff --git a/content/posts/2018-07.md b/content/posts/2018-07.md index 8c9d74980..b2c4d062f 100644 --- a/content/posts/2018-07.md +++ b/content/posts/2018-07.md @@ -147,9 +147,37 @@ Caused by: java.lang.RuntimeException: Failed to startup the DSpace Service Mana - I wonder if I should convert some of the cron jobs to systemd services / timers... - I sent a note to all our users on Yammer to ask them about possible maintenance on Sunday, July 14th - Abenet wants to be able to search by journal title (dc.source) in the advanced Discovery search so I opened an issue for it ([#384](https://github.com/ilri/DSpace/issues/384)) +- I regenerated the list of names for all our ORCID iDs using my [resolve-orcids.py](https://gist.github.com/alanorth/57a88379126d844563c1410bd7b8d12b) script: -## 2018-07-08 +``` +$ grep -oE '[A-Z0-9]{4}-[A-Z0-9]{4}-[A-Z0-9]{4}-[A-Z0-9]{4}' ~/src/git/DSpace/dspace/config/controlled-vocabularies/cg-creator-id.xml | sort | uniq > /tmp/2018-07-08-orcids.txt +$ ./resolve-orcids.py -i /tmp/2018-07-08-orcids.txt -o /tmp/2018-07-08-names.txt -d +``` + +- But after comparing to the existing list of names I didn't see much change, so I just ignored it + +## 2018-07-09 - Uptime Robot said that CGSpace was down for two minutes early this morning but I don't see anything in Tomcat logs or dmesg +- Uptime Robot said that CGSpace was down for two minutes again later in the day, and this time I saw a memory error in Tomcat's `catalina.out`: + +``` +Exception in thread "http-bio-127.0.0.1-8081-exec-557" java.lang.OutOfMemoryError: Java heap space +``` + +- I'm not sure if it's the same error, but I see this in DSpace's `solr.log`: + +``` +2018-07-09 06:25:09,913 ERROR org.apache.solr.servlet.SolrDispatchFilter @ null:java.lang.RuntimeException: java.lang.OutOfMemoryError: Java heap space +``` + +- I see a strange error around that time in `dspace.log.2018-07-08`: + +``` +2018-07-09 06:23:43,510 ERROR com.atmire.statistics.SolrLogThread @ IOException occured when talking to server at: http://localhost:8081/solr/statistics +org.apache.solr.client.solrj.SolrServerException: IOException occured when talking to server at: http://localhost:8081/solr/statistics +``` + +- But not sure what caused that... diff --git a/docs/2018-07/index.html b/docs/2018-07/index.html index 7fe069fc5..9d635387c 100644 --- a/docs/2018-07/index.html +++ b/docs/2018-07/index.html @@ -30,7 +30,7 @@ There is insufficient memory for the Java Runtime Environment to continue. - + @@ -71,9 +71,9 @@ There is insufficient memory for the Java Runtime Environment to continue. "@type": "BlogPosting", "headline": "July, 2018", "url": "https://alanorth.github.io/cgspace-notes/2018-07/", - "wordCount": "1064", + "wordCount": "1213", "datePublished": "2018-07-01T12:56:54+03:00", - "dateModified": "2018-07-08T23:20:36+03:00", + "dateModified": "2018-07-09T07:51:04+03:00", "author": { "@type": "Person", "name": "Alan Orth" @@ -304,12 +304,44 @@ Caused by: java.lang.RuntimeException: Failed to startup the DSpace Service Mana
  • I wonder if I should convert some of the cron jobs to systemd services / timers…
  • I sent a note to all our users on Yammer to ask them about possible maintenance on Sunday, July 14th
  • Abenet wants to be able to search by journal title (dc.source) in the advanced Discovery search so I opened an issue for it (#384)
  • +
  • I regenerated the list of names for all our ORCID iDs using my resolve-orcids.py script:
  • -

    2018-07-08

    +
    $ grep -oE '[A-Z0-9]{4}-[A-Z0-9]{4}-[A-Z0-9]{4}-[A-Z0-9]{4}' ~/src/git/DSpace/dspace/config/controlled-vocabularies/cg-creator-id.xml | sort | uniq > /tmp/2018-07-08-orcids.txt
    +$ ./resolve-orcids.py -i /tmp/2018-07-08-orcids.txt -o /tmp/2018-07-08-names.txt -d
    +
    + + + +

    2018-07-09

    + +
    Exception in thread "http-bio-127.0.0.1-8081-exec-557" java.lang.OutOfMemoryError: Java heap space
    +
    + + + +
    2018-07-09 06:25:09,913 ERROR org.apache.solr.servlet.SolrDispatchFilter @ null:java.lang.RuntimeException: java.lang.OutOfMemoryError: Java heap space
    +
    + + + +
    2018-07-09 06:23:43,510 ERROR com.atmire.statistics.SolrLogThread @ IOException occured when talking to server at: http://localhost:8081/solr/statistics
    +org.apache.solr.client.solrj.SolrServerException: IOException occured when talking to server at: http://localhost:8081/solr/statistics
    +
    + + diff --git a/docs/sitemap.xml b/docs/sitemap.xml index 0cb2b6067..43062b165 100644 --- a/docs/sitemap.xml +++ b/docs/sitemap.xml @@ -4,7 +4,7 @@ https://alanorth.github.io/cgspace-notes/2018-07/ - 2018-07-08T23:20:36+03:00 + 2018-07-09T07:51:04+03:00 @@ -174,7 +174,7 @@ https://alanorth.github.io/cgspace-notes/ - 2018-07-08T23:20:36+03:00 + 2018-07-09T07:51:04+03:00 0 @@ -185,7 +185,7 @@ https://alanorth.github.io/cgspace-notes/tags/notes/ - 2018-07-08T23:20:36+03:00 + 2018-07-09T07:51:04+03:00 0 @@ -197,13 +197,13 @@ https://alanorth.github.io/cgspace-notes/posts/ - 2018-07-08T23:20:36+03:00 + 2018-07-09T07:51:04+03:00 0 https://alanorth.github.io/cgspace-notes/tags/ - 2018-07-08T23:20:36+03:00 + 2018-07-09T07:51:04+03:00 0