2022-01-01 14:21:47 +01:00
<!DOCTYPE html>
< html lang = "en" >
< head >
< meta charset = "utf-8" >
< meta name = "viewport" content = "width=device-width, initial-scale=1, shrink-to-fit=no" >
< meta property = "og:title" content = "January, 2022" / >
< meta property = "og:description" content = "2022-01-01
Start a full harvest on AReS
" />
< meta property = "og:type" content = "article" / >
< meta property = "og:url" content = "https://alanorth.github.io/cgspace-notes/2022-01/" / >
< meta property = "article:published_time" content = "2022-01-01T15:20:54+02:00" / >
2022-01-12 18:55:47 +01:00
< meta property = "article:modified_time" content = "2022-01-06T15:48:27+02:00" / >
2022-01-01 14:21:47 +01:00
< meta name = "twitter:card" content = "summary" / >
< meta name = "twitter:title" content = "January, 2022" / >
< meta name = "twitter:description" content = "2022-01-01
Start a full harvest on AReS
"/>
< meta name = "generator" content = "Hugo 0.91.2" / >
< script type = "application/ld+json" >
{
"@context": "http://schema.org",
"@type": "BlogPosting",
"headline": "January, 2022",
"url": "https://alanorth.github.io/cgspace-notes/2022-01/",
2022-01-12 18:55:47 +01:00
"wordCount": "263",
2022-01-01 14:21:47 +01:00
"datePublished": "2022-01-01T15:20:54+02:00",
2022-01-12 18:55:47 +01:00
"dateModified": "2022-01-06T15:48:27+02:00",
2022-01-01 14:21:47 +01:00
"author": {
"@type": "Person",
"name": "Alan Orth"
},
"keywords": "Notes"
}
< / script >
< link rel = "canonical" href = "https://alanorth.github.io/cgspace-notes/2022-01/" >
< title > January, 2022 | CGSpace Notes< / title >
<!-- combined, minified CSS -->
< link href = "https://alanorth.github.io/cgspace-notes/css/style.beb8012edc08ba10be012f079d618dc243812267efe62e11f22fe49618f976a4.css" rel = "stylesheet" integrity = "sha256-vrgBLtwIuhC+AS8HnWGNwkOBImfv5i4R8i/klhj5dqQ=" crossorigin = "anonymous" >
<!-- minified Font Awesome for SVG icons -->
< script defer src = "https://alanorth.github.io/cgspace-notes/js/fontawesome.min.f5072c55a0721857184db93a50561d7dc13975b4de2e19db7f81eb5f3fa57270.js" integrity = "sha256-9QcsVaByGFcYTbk6UFYdfcE5dbTeLhnbf4HrXz+lcnA=" crossorigin = "anonymous" > < / script >
<!-- RSS 2.0 feed -->
< / head >
< body >
< div class = "blog-masthead" >
< div class = "container" >
< nav class = "nav blog-nav" >
< a class = "nav-link " href = "https://alanorth.github.io/cgspace-notes/" > Home< / a >
< / nav >
< / div >
< / div >
< header class = "blog-header" >
< div class = "container" >
< h1 class = "blog-title" dir = "auto" > < a href = "https://alanorth.github.io/cgspace-notes/" rel = "home" > CGSpace Notes< / a > < / h1 >
< p class = "lead blog-description" dir = "auto" > Documenting day-to-day work on the < a href = "https://cgspace.cgiar.org" > CGSpace< / a > repository.< / p >
< / div >
< / header >
< div class = "container" >
< div class = "row" >
< div class = "col-sm-8 blog-main" >
< article class = "blog-post" >
< header >
< h2 class = "blog-post-title" dir = "auto" > < a href = "https://alanorth.github.io/cgspace-notes/2022-01/" > January, 2022< / a > < / h2 >
< p class = "blog-post-meta" >
< time datetime = "2022-01-01T15:20:54+02:00" > Sat Jan 01, 2022< / time >
in
< span class = "fas fa-folder" aria-hidden = "true" > < / span > < a href = "/cgspace-notes/categories/notes/" rel = "category tag" > Notes< / a >
< / p >
< / header >
< h2 id = "2022-01-01" > 2022-01-01< / h2 >
< ul >
< li > Start a full harvest on AReS< / li >
< / ul >
2022-01-06 14:48:27 +01:00
< h2 id = "2022-01-06" > 2022-01-06< / h2 >
< ul >
< li > Add ORCID identifier for Chris Jones to CGSpace
< ul >
< li > Also tag eighty-eight of his items in CGSpace:< / li >
< / ul >
< / li >
< / ul >
< div class = "highlight" > < pre tabindex = "0" style = "color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4" > < code class = "language-console" data-lang = "console" > $ cat 2022-01-06-add-orcids.csv
dc.contributor.author,cg.creator.identifier
" Jones, Chris" ," Chris Jones: 0000-0001-9096-9728"
" Jones, Christopher S." ," Chris Jones: 0000-0001-9096-9728"
$ ./ilri/add-orcid-identifiers-csv.py -i 2022-01-06-add-orcids.csv -db dspace63 -u dspacetest -p < span style = "color:#e6db74" > ' dom@in34sniper' < / span >
2022-01-12 18:55:47 +01:00
< / code > < / pre > < / div > < h2 id = "2022-01-09" > 2022-01-09< / h2 >
< ul >
< li > Validate and register CGSpace on < a href = "https://www.openarchives.org/Register/ValidateSite?log=Z2V7WCT7" > OpenArchives< / a >
< ul >
< li > Last month IWMI colleagues were asking me to look into this, and after checking the OpenArchives mailing list it seems there was a problem on the server side< / li >
< li > Now it has worked and the message is “ Successfully updated OAI registration database to status COMPLIANT.” < / li >
< li > I received an email (as the Admin contact on our OAI) that says:< / li >
< / ul >
< / li >
< / ul >
< blockquote >
< p > Your repository has been registered in the OAI database of conforming repositories.< / p >
< / blockquote >
< ul >
< li > Now I’ m taking a screenshot of the validation page for posterity, because the logs seem to go away after some time< / li >
< / ul >
< p > < img src = "/cgspace-notes/2022/01/openarchives-registration.png" alt = "OpenArchives.org registration" > < / p >
< ul >
< li > I tried to re-build the Docker image for OpenRXV and got an error in the backend:< / li >
< / ul >
< div class = "highlight" > < pre tabindex = "0" style = "color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4" > < code class = "language-console" data-lang = "console" > ...
> openrxv-backend@0.0.1 build
> nest build
< span style = "color:#960050;background-color:#1e0010" >
< / span > < span style = "color:#960050;background-color:#1e0010" > < / span > node_modules/@elastic/elasticsearch/api/types.d.ts:2454:13 - error TS2456: Type alias ' AggregationsAggregate' circularly references itself.
< span style = "color:#960050;background-color:#1e0010" >
< / span > < span style = "color:#960050;background-color:#1e0010" > < / span > 2454 export type AggregationsAggregate = AggregationsSingleBucketAggregate | AggregationsAutoDateHistogramAggregate | AggregationsFiltersAggregate | AggregationsSignificantTermsAggregate< any> | AggregationsTermsAggregate< any> | AggregationsBucketAggregate | AggregationsCompositeBucketAggregate | AggregationsMultiBucketAggregate< AggregationsBucket> | AggregationsMatrixStatsAggregate | AggregationsKeyedValueAggregate | AggregationsMetricAggregate
~~~~~~~~~~~~~~~~~~~~~
node_modules/@elastic/elasticsearch/api/types.d.ts:3209:13 - error TS2456: Type alias ' AggregationsSingleBucketAggregate' circularly references itself.
< span style = "color:#960050;background-color:#1e0010" >
< / span > < span style = "color:#960050;background-color:#1e0010" > < / span > 3209 export type AggregationsSingleBucketAggregate = AggregationsSingleBucketAggregateKeys
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
< span style = "color:#960050;background-color:#1e0010" >
< / span > < span style = "color:#960050;background-color:#1e0010" > < / span > Found 2 error(s).
< / code > < / pre > < / div > < ul >
< li > Ah, it seems the code on the server was slightly out of date
< ul >
< li > I checked out the latest master branch and it built< / li >
< / ul >
< / li >
< / ul >
< h2 id = "2022-01-12" > 2022-01-12< / h2 >
< ul >
< li > Fix some citation formatting issues in Gaia’ s < a href = "https://dspacetest.cgiar.org/handle/10568/115230" > eighteen CAS Green Cover publications on DSpace Test< / a > < / li >
< / ul >
<!-- raw HTML omitted -->
2022-01-01 14:21:47 +01:00
< / article >
< / div > <!-- /.blog - main -->
< aside class = "col-sm-3 ml-auto blog-sidebar" >
< section class = "sidebar-module" >
< h4 > Recent Posts< / h4 >
< ol class = "list-unstyled" >
< li > < a href = "/cgspace-notes/2022-01/" > January, 2022< / a > < / li >
< li > < a href = "/cgspace-notes/2021-12/" > December, 2021< / a > < / li >
< li > < a href = "/cgspace-notes/2021-11/" > November, 2021< / a > < / li >
< li > < a href = "/cgspace-notes/2021-10/" > October, 2021< / a > < / li >
< li > < a href = "/cgspace-notes/2021-09/" > September, 2021< / a > < / li >
< / ol >
< / section >
< section class = "sidebar-module" >
< h4 > Links< / h4 >
< ol class = "list-unstyled" >
< li > < a href = "https://cgspace.cgiar.org" > CGSpace< / a > < / li >
< li > < a href = "https://dspacetest.cgiar.org" > DSpace Test< / a > < / li >
< li > < a href = "https://github.com/ilri/DSpace" > CGSpace @ GitHub< / a > < / li >
< / ol >
< / section >
< / aside >
< / div > <!-- /.row -->
< / div > <!-- /.container -->
< footer class = "blog-footer" >
< p dir = "auto" >
Blog template created by < a href = "https://twitter.com/mdo" > @mdo< / a > , ported to Hugo by < a href = 'https://twitter.com/mralanorth' > @mralanorth< / a > .
< / p >
< p >
< a href = "#" > Back to top< / a >
< / p >
< / footer >
< / body >
< / html >
