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An item was mapped twice erroneously again, so I had to remove one of the mappings manually:


dspace=# select * from collection2item where item_id = &#39;80278&#39;;
  id   | collection_id | item_id
-------&#43;---------------&#43;---------
 92551 |           313 |   80278
 92550 |           313 |   80278
 90774 |          1051 |   80278
(3 rows)
dspace=# delete from collection2item where id = 92551 and item_id = 80278;
DELETE 1


Create issue on GitHub to track the addition of CCAFS Phase II project tags (#301)
Looks like we&rsquo;ll be using cg.identifier.ccafsprojectpii as the field name


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<meta name="twitter:title" content="February, 2017"/>
<meta name="twitter:description" content="2017-02-07


An item was mapped twice erroneously again, so I had to remove one of the mappings manually:


dspace=# select * from collection2item where item_id = &#39;80278&#39;;
  id   | collection_id | item_id
-------&#43;---------------&#43;---------
 92551 |           313 |   80278
 92550 |           313 |   80278
 90774 |          1051 |   80278
(3 rows)
dspace=# delete from collection2item where id = 92551 and item_id = 80278;
DELETE 1


Create issue on GitHub to track the addition of CCAFS Phase II project tags (#301)
Looks like we&rsquo;ll be using cg.identifier.ccafsprojectpii as the field name


"/>


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        <h1 class="blog-title"><a href="https://alanorth.github.io/cgspace-notes/" rel="home">CGSpace Notes</a></h1>
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    <h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2017-02/">February, 2017</a></h2>
    <p class="blog-post-meta"><time datetime="2017-02-07T07:04:52-08:00">Tue Feb 07, 2017</time> by Alan Orth in 

<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>

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  <h2 id="2017-02-07">2017-02-07</h2>

<ul>
<li>An item was mapped twice erroneously again, so I had to remove one of the mappings manually:</li>
</ul>

<pre><code>dspace=# select * from collection2item where item_id = '80278';
  id   | collection_id | item_id
-------+---------------+---------
 92551 |           313 |   80278
 92550 |           313 |   80278
 90774 |          1051 |   80278
(3 rows)
dspace=# delete from collection2item where id = 92551 and item_id = 80278;
DELETE 1
</code></pre>

<ul>
<li>Create issue on GitHub to track the addition of CCAFS Phase II project tags (<a href="https://github.com/ilri/DSpace/issues/301">#301</a>)</li>
<li>Looks like we&rsquo;ll be using <code>cg.identifier.ccafsprojectpii</code> as the field name</li>
</ul>

<p></p>

<h2 id="2017-02-08">2017-02-08</h2>

<ul>
<li>We also need to rename some of the CCAFS Phase I flagships:

<ul>
<li>CLIMATE-SMART AGRICULTURAL PRACTICES → CLIMATE-SMART TECHNOLOGIES AND PRACTICES</li>
<li>CLIMATE RISK MANAGEMENT → CLIMATE SERVICES AND SAFETY NETS</li>
<li>LOW EMISSIONS AGRICULTURE → LOW EMISSIONS DEVELOPMENT</li>
<li>POLICIES AND INSTITUTIONS → PRIORITIES AND POLICIES FOR CSA</li>
</ul></li>
<li>The climate risk management one doesn&rsquo;t exist, so I will have to ask Magdalena if they want me to add it to the input forms</li>
<li>Start testing some nearly 500 author corrections that CCAFS sent me:</li>
</ul>

<pre><code>$ ./fix-metadata-values.py -i /tmp/CCAFS-Authors-Feb-7.csv -f dc.contributor.author -t 'correct name' -m 3 -d dspace -u dspace -p fuuu
</code></pre>

<h2 id="2017-02-09">2017-02-09</h2>

<ul>
<li>More work on CCAFS Phase II stuff</li>
<li>Looks like simply adding a new metadata field to <code>dspace/config/registries/cgiar-types.xml</code> and restarting DSpace causes the field to get added to the rregistry</li>
<li>It requires a restart but at least it allows you to manage the registry programmatically</li>
<li>It&rsquo;s not a very good way to manage the registry, though, as removing one there doesn&rsquo;t cause it to be removed from the registry, and we always restore from database backups so there would never be a scenario when we needed these to be created</li>
<li>Testing some corrections on CCAFS Phase II flagships (<code>cg.subject.ccafs</code>):</li>
</ul>

<pre><code>$ ./fix-metadata-values.py -i ccafs-flagships-feb7.csv -f cg.subject.ccafs -t correct -m 210 -d dspace -u dspace -p fuuu
</code></pre>

<h2 id="2017-02-10">2017-02-10</h2>

<ul>
<li>CCAFS said they want to wait on the flagship updates (<code>cg.subject.ccafs</code>) on CGSpace, perhaps for a month or so</li>
<li>Help Marianne Gadeberg (WLE) with some user permissions as it seems she had previously been using a personal email account, and is now on a CGIAR one</li>
<li>I manually added her new account to ~25 authorizations that her hold user was on</li>
</ul>

<h2 id="2017-02-14">2017-02-14</h2>

<ul>
<li>Add <code>SCALING</code> to ILRI subjects (<a href="https://github.com/ilri/DSpace/pull/304">#304</a>), as Sisay&rsquo;s attempts were all sloppy</li>
<li>Cherry pick some patches from the DSpace 5.7 branch:

<ul>
<li>DS-3363 CSV import error says &ldquo;row&rdquo;, means &ldquo;column&rdquo;: f7b6c83e991db099003ee4e28ca33d3c7bab48c0</li>
<li>DS-3479 avoid adding empty metadata values during import: 329f3b48a6de7fad074d825fd12118f7e181e151</li>
<li>[DS-3456] 5x Clarify command line options for statisics import/export tools (#1623): 567ec083c8a94eb2bcc1189816eb4f767745b278</li>
<li>[DS-3458]5x Allow Shard Process to Append to an existing repo: 3c8ecb5d1fd69a1dcfee01feed259e80abbb7749</li>
</ul></li>
<li>I still need to test these, especially as the last two which change some stuff with Solr maintenance</li>
</ul>

<h2 id="2017-02-15">2017-02-15</h2>

<ul>
<li>Update rvm on DSpace Test and CGSpace as there was a <a href="https://github.com/justinsteven/advisories/blob/master/2017_rvm_cd_command_execution.md">security disclosure about versions less than 1.28.0</a></li>
</ul>

<h2 id="2017-02-16">2017-02-16</h2>

<ul>
<li>Looking at memory info from munin on CGSpace:</li>
</ul>

<p><img src="/cgspace-notes/2017/02/meminfo_phisical-week.png" alt="CGSpace meminfo" /></p>

<ul>
<li>We are using only ~8GB of RAM for applications, and 16GB for caches!</li>
<li>The Linode machine we&rsquo;re on has 24GB of RAM but only because that&rsquo;s the only instance that had enough disk space for us (384GB)&hellip;</li>
<li>We should probably look into Google Compute Engine or Digital Ocean where we can get more storage without having to follow a linear increase in instance pricing for CPU/memory as well</li>
<li>Especially because we only use 2 out of 8 CPUs basically:</li>
</ul>

<p><img src="/cgspace-notes/2017/02/cpu-week.png" alt="CGSpace CPU" /></p>

  
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