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340 lines
9.9 KiB
HTML
340 lines
9.9 KiB
HTML
<!DOCTYPE html>
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<meta property="og:title" content="February, 2017" />
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<meta property="og:description" content="2017-02-07
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An item was mapped twice erroneously again, so I had to remove one of the mappings manually:
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dspace=# select * from collection2item where item_id = '80278';
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id | collection_id | item_id
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-------+---------------+---------
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92551 | 313 | 80278
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92550 | 313 | 80278
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90774 | 1051 | 80278
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(3 rows)
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dspace=# delete from collection2item where id = 92551 and item_id = 80278;
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DELETE 1
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Create issue on GitHub to track the addition of CCAFS Phase II project tags (#301)
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Looks like we’ll be using cg.identifier.ccafsprojectpii as the field name
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" />
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<meta property="og:type" content="article" />
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<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/2017-02/" />
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<meta property="article:published_time" content="2017-02-07T07:04:52-08:00"/>
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<meta property="article:modified_time" content="2017-02-07T07:04:52-08:00"/>
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<meta name="twitter:title" content="February, 2017"/>
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<meta name="twitter:description" content="2017-02-07
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An item was mapped twice erroneously again, so I had to remove one of the mappings manually:
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dspace=# select * from collection2item where item_id = '80278';
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id | collection_id | item_id
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-------+---------------+---------
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92551 | 313 | 80278
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92550 | 313 | 80278
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90774 | 1051 | 80278
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(3 rows)
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dspace=# delete from collection2item where id = 92551 and item_id = 80278;
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DELETE 1
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Create issue on GitHub to track the addition of CCAFS Phase II project tags (#301)
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Looks like we’ll be using cg.identifier.ccafsprojectpii as the field name
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"/>
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<meta name="generator" content="Hugo 0.18.1" />
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{
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"@context": "http://schema.org",
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"@type": "BlogPosting",
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"headline": "February, 2017",
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"url": "https://alanorth.github.io/cgspace-notes/2017-02/",
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"datePublished": "2017-02-07T07:04:52-08:00",
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"dateModified": "2017-02-07T07:04:52-08:00",
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"author": {
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"name": "Alan Orth"
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,
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"keywords": "Notes"
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<link rel="canonical" href="https://alanorth.github.io/cgspace-notes/2017-02/">
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<title>February, 2017 | CGSpace Notes</title>
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<link href="https://alanorth.github.io/cgspace-notes/css/style.css" rel="stylesheet" integrity="sha384-qRVpIj9hSzsBhmO8Y7YEKF2UFra2sJQtl9V/uFKKDvy+Wjh9zgTku6VRgT8YdPoD" crossorigin="anonymous">
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<a class="nav-link " href="https://alanorth.github.io/cgspace-notes/">Home</a>
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<header class="blog-header">
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<div class="container">
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<h1 class="blog-title"><a href="https://alanorth.github.io/cgspace-notes/" rel="home">CGSpace Notes</a></h1>
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<p class="lead blog-description">Documenting day-to-day work on the <a href="https://cgspace.cgiar.org">CGSpace</a> repository.</p>
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</div>
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</header>
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<article class="blog-post">
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<header>
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<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2017-02/">February, 2017</a></h2>
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<p class="blog-post-meta"><time datetime="2017-02-07T07:04:52-08:00">Tue Feb 07, 2017</time> by Alan Orth in
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<i class="fa fa-tag" aria-hidden="true"></i> <a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
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</p>
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</header>
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<h2 id="2017-02-07">2017-02-07</h2>
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<ul>
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<li>An item was mapped twice erroneously again, so I had to remove one of the mappings manually:</li>
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</ul>
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<pre><code>dspace=# select * from collection2item where item_id = '80278';
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id | collection_id | item_id
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-------+---------------+---------
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92551 | 313 | 80278
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92550 | 313 | 80278
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90774 | 1051 | 80278
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(3 rows)
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dspace=# delete from collection2item where id = 92551 and item_id = 80278;
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DELETE 1
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</code></pre>
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<ul>
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<li>Create issue on GitHub to track the addition of CCAFS Phase II project tags (<a href="https://github.com/ilri/DSpace/issues/301">#301</a>)</li>
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<li>Looks like we’ll be using <code>cg.identifier.ccafsprojectpii</code> as the field name</li>
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</ul>
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<p></p>
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<h2 id="2017-02-08">2017-02-08</h2>
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<ul>
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<li>We also need to rename some of the CCAFS Phase I flagships:
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<ul>
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<li>CLIMATE-SMART AGRICULTURAL PRACTICES → CLIMATE-SMART TECHNOLOGIES AND PRACTICES</li>
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<li>CLIMATE RISK MANAGEMENT → CLIMATE SERVICES AND SAFETY NETS</li>
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<li>LOW EMISSIONS AGRICULTURE → LOW EMISSIONS DEVELOPMENT</li>
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<li>POLICIES AND INSTITUTIONS → PRIORITIES AND POLICIES FOR CSA</li>
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</ul></li>
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<li>The climate risk management one doesn’t exist, so I will have to ask Magdalena if they want me to add it to the input forms</li>
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<li>Start testing some nearly 500 author corrections that CCAFS sent me:</li>
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</ul>
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<pre><code>$ ./fix-metadata-values.py -i /tmp/CCAFS-Authors-Feb-7.csv -f dc.contributor.author -t 'correct name' -m 3 -d dspace -u dspace -p fuuu
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</code></pre>
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<h2 id="2017-02-09">2017-02-09</h2>
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<ul>
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<li>More work on CCAFS Phase II stuff</li>
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<li>Looks like simply adding a new metadata field to <code>dspace/config/registries/cgiar-types.xml</code> and restarting DSpace causes the field to get added to the rregistry</li>
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<li>It requires a restart but at least it allows you to manage the registry programmatically</li>
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<li>It’s not a very good way to manage the registry, though, as removing one there doesn’t cause it to be removed from the registry, and we always restore from database backups so there would never be a scenario when we needed these to be created</li>
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<li>Testing some corrections on CCAFS Phase II flagships (<code>cg.subject.ccafs</code>):</li>
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</ul>
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<pre><code>$ ./fix-metadata-values.py -i ccafs-flagships-feb7.csv -f cg.subject.ccafs -t correct -m 210 -d dspace -u dspace -p fuuu
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</code></pre>
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<h2 id="2017-02-10">2017-02-10</h2>
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<ul>
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<li>CCAFS said they want to wait on the flagship updates (<code>cg.subject.ccafs</code>) on CGSpace, perhaps for a month or so</li>
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<li>Help Marianne Gadeberg (WLE) with some user permissions as it seems she had previously been using a personal email account, and is now on a CGIAR one</li>
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<li>I manually added her new account to ~25 authorizations that her hold user was on</li>
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</ul>
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<h2 id="2017-02-14">2017-02-14</h2>
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<ul>
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<li>Add <code>SCALING</code> to ILRI subjects (<a href="https://github.com/ilri/DSpace/pull/304">#304</a>), as Sisay’s attempts were all sloppy</li>
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<li>Cherry pick some patches from the DSpace 5.7 branch:
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<ul>
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<li>DS-3363 CSV import error says “row”, means “column”: f7b6c83e991db099003ee4e28ca33d3c7bab48c0</li>
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<li>DS-3479 avoid adding empty metadata values during import: 329f3b48a6de7fad074d825fd12118f7e181e151</li>
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<li>[DS-3456] 5x Clarify command line options for statisics import/export tools (#1623): 567ec083c8a94eb2bcc1189816eb4f767745b278</li>
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<li>[DS-3458]5x Allow Shard Process to Append to an existing repo: 3c8ecb5d1fd69a1dcfee01feed259e80abbb7749</li>
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</ul></li>
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<li>I still need to test these, especially as the last two which change some stuff with Solr maintenance</li>
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</ul>
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<h2 id="2017-02-15">2017-02-15</h2>
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<ul>
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<li>Update rvm on DSpace Test and CGSpace as there was a <a href="https://github.com/justinsteven/advisories/blob/master/2017_rvm_cd_command_execution.md">security disclosure about versions less than 1.28.0</a></li>
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</ul>
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<h2 id="2017-02-16">2017-02-16</h2>
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<ul>
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<li>Looking at memory info from munin on CGSpace:</li>
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</ul>
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<p><img src="/cgspace-notes/2017/02/meminfo_phisical-week.png" alt="CGSpace meminfo" /></p>
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<ul>
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<li>We are using only ~8GB of RAM for applications, and 16GB for caches!</li>
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<li>The Linode machine we’re on has 24GB of RAM but only because that’s the only instance that had enough disk space for us (384GB)…</li>
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<li>We should probably look into Google Compute Engine or Digital Ocean where we can get more storage without having to follow a linear increase in instance pricing for CPU/memory as well</li>
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<li>Especially because we only use 2 out of 8 CPUs basically:</li>
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</ul>
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<p><img src="/cgspace-notes/2017/02/cpu-week.png" alt="CGSpace CPU" /></p>
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</article>
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</div> <!-- /.blog-main -->
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<aside class="col-sm-3 offset-sm-1 blog-sidebar">
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<section class="sidebar-module">
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<h4>Recent Posts</h4>
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<ol class="list-unstyled">
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<li><a href="/cgspace-notes/2017-02/">February, 2017</a></li>
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<li><a href="/cgspace-notes/2017-01/">January, 2017</a></li>
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<li><a href="/cgspace-notes/2016-12/">December, 2016</a></li>
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<li><a href="/cgspace-notes/2016-11/">November, 2016</a></li>
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<li><a href="/cgspace-notes/2016-10/">October, 2016</a></li>
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</ol>
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</section>
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<section class="sidebar-module">
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<h4>Links</h4>
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<ol class="list-unstyled">
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<li><a href="https://cgspace.cgiar.org">CGSpace</a></li>
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<li><a href="https://dspacetest.cgiar.org">DSpace Test</a></li>
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<li><a href="https://github.com/ilri/DSpace">CGSpace @ GitHub</a></li>
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</ol>
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</section>
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</aside>
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</div> <!-- /.row -->
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</div> <!-- /.container -->
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<footer class="blog-footer">
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<p>
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Blog template created by <a href="https://twitter.com/mdo">@mdo</a>, ported to Hugo by <a href='https://twitter.com/mralanorth'>@mralanorth</a>.
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