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< h1 class = "blog-title" dir = "auto" > < a href = "https://alanorth.github.io/cgspace-notes/" rel = "home" > CGSpace Notes< / a > < / h1 >
< p class = "lead blog-description" dir = "auto" > Documenting day-to-day work on the < a href = "https://cgspace.cgiar.org" > CGSpace< / a > repository.< / p >
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2022-06-06 08:45:43 +02:00
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< header >
< h2 class = "blog-post-title" dir = "auto" > < a href = "https://alanorth.github.io/cgspace-notes/2021-08/" > August, 2021< / a > < / h2 >
< p class = "blog-post-meta" > < time datetime = "2021-08-01T09:01:07+03:00" > Sun Aug 01, 2021< / time > by Alan Orth in
2022-06-23 07:40:53 +02:00
< span class = "fas fa-folder" aria-hidden = "true" > < / span > < a href = "/categories/notes/" rel = "category tag" > Notes< / a >
2022-06-06 08:45:43 +02:00
< / p >
< / header >
< h2 id = "2021-08-01" > 2021-08-01< / h2 >
< ul >
< li > Update Docker images on AReS server (linode20) and reboot the server:< / li >
< / ul >
< div class = "highlight" > < pre tabindex = "0" style = "color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;" > < code class = "language-console" data-lang = "console" > < span style = "display:flex;" > < span > # docker images | grep -v ^REPO | sed < span style = "color:#e6db74" > ' s/ \+/:/g' < / span > | cut -d: -f1,2 | grep -v none | xargs -L1 docker pull
< / span > < / span > < / code > < / pre > < / div > < ul >
< li > I decided to upgrade linode20 from Ubuntu 18.04 to 20.04< / li >
< / ul >
< a href = 'https://alanorth.github.io/cgspace-notes/2021-08/' > Read more →< / a >
< / article >
2022-05-04 10:09:45 +02:00
< article class = "blog-post" >
< header >
< h2 class = "blog-post-title" dir = "auto" > < a href = "https://alanorth.github.io/cgspace-notes/2021-07/" > July, 2021< / a > < / h2 >
< p class = "blog-post-meta" > < time datetime = "2021-07-01T08:53:07+03:00" > Thu Jul 01, 2021< / time > by Alan Orth in
2022-06-23 07:40:53 +02:00
< span class = "fas fa-folder" aria-hidden = "true" > < / span > < a href = "/categories/notes/" rel = "category tag" > Notes< / a >
2022-05-04 10:09:45 +02:00
< / p >
< / header >
< h2 id = "2021-07-01" > 2021-07-01< / h2 >
< ul >
< li > Export another list of ALL subjects on CGSpace, including AGROVOC and non-AGROVOC for Enrico:< / li >
< / ul >
< div class = "highlight" > < pre tabindex = "0" style = "color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;" > < code class = "language-console" data-lang = "console" > < span style = "display:flex;" > < span > localhost/dspace63= > \COPY (SELECT DISTINCT LOWER(text_value) AS subject, count(*) FROM metadatavalue WHERE dspace_object_id in (SELECT dspace_object_id FROM item) AND metadata_field_id IN (119, 120, 127, 122, 128, 125, 135, 203, 208, 210, 215, 123, 236, 242, 187) GROUP BY subject ORDER BY count DESC) to /tmp/2021-07-01-all-subjects.csv WITH CSV HEADER;
< / span > < / span > < span style = "display:flex;" > < span > COPY 20994
< / span > < / span > < / code > < / pre > < / div >
< a href = 'https://alanorth.github.io/cgspace-notes/2021-07/' > Read more →< / a >
< / article >
2022-04-04 18:15:58 +02:00
< article class = "blog-post" >
< header >
< h2 class = "blog-post-title" dir = "auto" > < a href = "https://alanorth.github.io/cgspace-notes/2021-06/" > June, 2021< / a > < / h2 >
< p class = "blog-post-meta" > < time datetime = "2021-06-01T10:51:07+03:00" > Tue Jun 01, 2021< / time > by Alan Orth in
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< span class = "fas fa-folder" aria-hidden = "true" > < / span > < a href = "/categories/notes/" rel = "category tag" > Notes< / a >
2022-04-04 18:15:58 +02:00
< / p >
< / header >
< h2 id = "2021-06-01" > 2021-06-01< / h2 >
< ul >
< li > IWMI notified me that AReS was down with an HTTP 502 error
< ul >
< li > Looking at UptimeRobot I see it has been down for 33 hours, but I never got a notification< / li >
< li > I don’ t see anything in the Elasticsearch container logs, or the systemd journal on the host, but I notice that the < code > angular_nginx< / code > container isn’ t running< / li >
< li > I simply started it and AReS was running again:< / li >
< / ul >
< / li >
< / ul >
< a href = 'https://alanorth.github.io/cgspace-notes/2021-06/' > Read more →< / a >
< / article >
2022-03-01 15:48:40 +01:00
< article class = "blog-post" >
< header >
< h2 class = "blog-post-title" dir = "auto" > < a href = "https://alanorth.github.io/cgspace-notes/2021-05/" > May, 2021< / a > < / h2 >
< p class = "blog-post-meta" > < time datetime = "2021-05-02T09:50:54+03:00" > Sun May 02, 2021< / time > by Alan Orth in
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< span class = "fas fa-folder" aria-hidden = "true" > < / span > < a href = "/categories/notes/" rel = "category tag" > Notes< / a >
2022-03-01 15:48:40 +01:00
< / p >
< / header >
< h2 id = "2021-05-01" > 2021-05-01< / h2 >
< ul >
< li > I looked at the top user agents and IPs in the Solr statistics for last month and I see these user agents:
< ul >
< li > “ RI/1.0” , 1337< / li >
< li > “ Microsoft Office Word 2014” , 941< / li >
< / ul >
< / li >
< li > I will add the RI/1.0 pattern to our DSpace agents overload and purge them from Solr (we had previously seen this agent with 9,000 hits or so in 2020-09), but I think I will leave the Microsoft Word one… as that’ s an actual user… < / li >
< / ul >
< a href = 'https://alanorth.github.io/cgspace-notes/2021-05/' > Read more →< / a >
< / article >
2022-02-10 18:35:40 +01:00
< article class = "blog-post" >
< header >
< h2 class = "blog-post-title" dir = "auto" > < a href = "https://alanorth.github.io/cgspace-notes/2021-04/" > April, 2021< / a > < / h2 >
< p class = "blog-post-meta" > < time datetime = "2021-04-01T09:50:54+03:00" > Thu Apr 01, 2021< / time > by Alan Orth in
2022-06-23 07:40:53 +02:00
< span class = "fas fa-folder" aria-hidden = "true" > < / span > < a href = "/categories/notes/" rel = "category tag" > Notes< / a >
2022-02-10 18:35:40 +01:00
< / p >
< / header >
< h2 id = "2021-04-01" > 2021-04-01< / h2 >
< ul >
< li > I wrote a script to query Sherpa’ s API for our ISSNs: < code > sherpa-issn-lookup.py< / code >
< ul >
< li > I’ m curious to see how the results compare with the results from Crossref yesterday< / li >
< / ul >
< / li >
< li > AReS Explorer was down since this morning, I didn’ t see anything in the systemd journal
< ul >
< li > I simply took everything down with docker-compose and then back up, and then it was OK< / li >
< li > Perhaps one of the containers crashed, I should have looked closer but I was in a hurry< / li >
< / ul >
< / li >
< / ul >
< a href = 'https://alanorth.github.io/cgspace-notes/2021-04/' > Read more →< / a >
< / article >
2022-01-01 14:21:47 +01:00
< article class = "blog-post" >
< header >
< h2 class = "blog-post-title" dir = "auto" > < a href = "https://alanorth.github.io/cgspace-notes/2021-03/" > March, 2021< / a > < / h2 >
< p class = "blog-post-meta" > < time datetime = "2021-03-01T10:13:54+02:00" > Mon Mar 01, 2021< / time > by Alan Orth in
2022-06-23 07:40:53 +02:00
< span class = "fas fa-folder" aria-hidden = "true" > < / span > < a href = "/categories/notes/" rel = "category tag" > Notes< / a >
2022-01-01 14:21:47 +01:00
< / p >
< / header >
< h2 id = "2021-03-01" > 2021-03-01< / h2 >
< ul >
< li > Discuss some OpenRXV issues with Abdullah from CodeObia
< ul >
< li > He’ s trying to work on the DSpace 6+ metadata schema autoimport using the DSpace 6+ REST API< / li >
< li > Also, we found some issues building and running OpenRXV currently due to ecosystem shift in the Node.js dependencies< / li >
< / ul >
< / li >
< / ul >
< a href = 'https://alanorth.github.io/cgspace-notes/2021-03/' > Read more →< / a >
< / article >
2021-12-03 11:58:43 +01:00
< article class = "blog-post" >
< header >
< h2 class = "blog-post-title" dir = "auto" > < a href = "https://alanorth.github.io/cgspace-notes/cgspace-cgcorev2-migration/" > CGSpace CG Core v2 Migration< / a > < / h2 >
< p class = "blog-post-meta" > < time datetime = "2021-02-21T13:27:35+02:00" > Sun Feb 21, 2021< / time > by Alan Orth in
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< span class = "fas fa-folder" aria-hidden = "true" > < / span > < a href = "/categories/notes/" rel = "category tag" > Notes< / a >
2021-12-03 11:58:43 +01:00
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< span class = "fas fa-tag" aria-hidden = "true" > < / span > < a href = "/tags/migration/" rel = "tag" > Migration< / a >
2021-12-03 11:58:43 +01:00
< / p >
< / header >
< p > Changes to CGSpace metadata fields to align more with DC, QDC, and DCTERMS as well as CG Core v2. Implemented on 2021-02-21.< / p >
< p > With reference to < a href = "https://agriculturalsemantics.github.io/cg-core/cgcore.html" > CG Core v2 draft standard< / a > by Marie-Angélique as well as < a href = "http://www.dublincore.org/specifications/dublin-core/dcmi-terms/" > DCMI DCTERMS< / a > .< / p >
< a href = 'https://alanorth.github.io/cgspace-notes/cgspace-cgcorev2-migration/' > Read more →< / a >
< / article >
2021-11-01 09:49:21 +01:00
< article class = "blog-post" >
< header >
< h2 class = "blog-post-title" dir = "auto" > < a href = "https://alanorth.github.io/cgspace-notes/2021-02/" > February, 2021< / a > < / h2 >
< p class = "blog-post-meta" > < time datetime = "2021-02-01T10:13:54+02:00" > Mon Feb 01, 2021< / time > by Alan Orth in
2022-06-23 07:40:53 +02:00
< span class = "fas fa-folder" aria-hidden = "true" > < / span > < a href = "/categories/notes/" rel = "category tag" > Notes< / a >
2021-11-01 09:49:21 +01:00
< / p >
< / header >
< h2 id = "2021-02-01" > 2021-02-01< / h2 >
< ul >
< li > Abenet said that CIP found more duplicate records in their export from AReS
< ul >
< li > I re-opened < a href = "https://github.com/ilri/OpenRXV/issues/67" > the issue< / a > on OpenRXV where we had previously noticed this< / li >
< li > The shared link where the duplicates are is here: < a href = "https://cgspace.cgiar.org/explorer/shared/heEOz3YBnXdK69bR2ra6" > https://cgspace.cgiar.org/explorer/shared/heEOz3YBnXdK69bR2ra6< / a > < / li >
< / ul >
< / li >
< li > I had a call with CodeObia to discuss the work on OpenRXV< / li >
< li > Check the results of the AReS harvesting from last night:< / li >
< / ul >
2022-03-04 13:30:06 +01:00
< div class = "highlight" > < pre tabindex = "0" style = "color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;" > < code class = "language-console" data-lang = "console" > < span style = "display:flex;" > < span > $ curl -s < span style = "color:#e6db74" > ' http://localhost:9200/openrxv-items-temp/_count?q=*& pretty' < / span >
< / span > < / span > < span style = "display:flex;" > < span > {
< / span > < / span > < span style = "display:flex;" > < span > " count" : 100875,
< / span > < / span > < span style = "display:flex;" > < span > " _shards" : {
< / span > < / span > < span style = "display:flex;" > < span > " total" : 1,
< / span > < / span > < span style = "display:flex;" > < span > " successful" : 1,
< / span > < / span > < span style = "display:flex;" > < span > " skipped" : 0,
< / span > < / span > < span style = "display:flex;" > < span > " failed" : 0
< / span > < / span > < span style = "display:flex;" > < span > }
< / span > < / span > < span style = "display:flex;" > < span > }
< / span > < / span > < / code > < / pre > < / div >
2021-11-01 09:49:21 +01:00
< a href = 'https://alanorth.github.io/cgspace-notes/2021-02/' > Read more →< / a >
< / article >
< article class = "blog-post" >
< header >
< h2 class = "blog-post-title" dir = "auto" > < a href = "https://alanorth.github.io/cgspace-notes/2021-01/" > January, 2021< / a > < / h2 >
< p class = "blog-post-meta" > < time datetime = "2021-01-03T10:13:54+02:00" > Sun Jan 03, 2021< / time > by Alan Orth in
2022-06-23 07:40:53 +02:00
< span class = "fas fa-folder" aria-hidden = "true" > < / span > < a href = "/categories/notes/" rel = "category tag" > Notes< / a >
2021-11-01 09:49:21 +01:00
< / p >
< / header >
< h2 id = "2021-01-03" > 2021-01-03< / h2 >
< ul >
< li > Peter notified me that some filters on AReS were broken again
< ul >
< li > It’ s the same issue with the field names getting < code > .keyword< / code > appended to the end that I already < a href = "https://github.com/ilri/OpenRXV/issues/66" > filed an issue on OpenRXV about last month< / a > < / li >
< li > I fixed the broken filters (careful to not edit any others, lest they break too!)< / li >
< / ul >
< / li >
< li > Fix an issue with start page number for the DSpace REST API and statistics API in OpenRXV
< ul >
< li > The start page had been “ 1” in the UI, but in the backend they were doing some gymnastics to adjust to the zero-based offset/limit/page of the DSpace REST API and the statistics API< / li >
< li > I adjusted it to default to 0 and added a note to the admin screen< / li >
< li > I realized that this issue was actually causing the first page of 100 statistics to be missing… < / li >
< li > For example, < a href = "https://cgspace.cgiar.org/handle/10568/66839" > this item< / a > has 51 views on CGSpace, but 0 on AReS< / li >
< / ul >
< / li >
< / ul >
< a href = 'https://alanorth.github.io/cgspace-notes/2021-01/' > Read more →< / a >
< / article >
2021-09-02 16:21:48 +02:00
< article class = "blog-post" >
< header >
< h2 class = "blog-post-title" dir = "auto" > < a href = "https://alanorth.github.io/cgspace-notes/2020-12/" > December, 2020< / a > < / h2 >
< p class = "blog-post-meta" > < time datetime = "2020-12-01T11:32:54+02:00" > Tue Dec 01, 2020< / time > by Alan Orth in
2022-06-23 07:40:53 +02:00
< span class = "fas fa-folder" aria-hidden = "true" > < / span > < a href = "/categories/notes/" rel = "category tag" > Notes< / a >
2021-09-02 16:21:48 +02:00
< / p >
< / header >
< h2 id = "2020-12-01" > 2020-12-01< / h2 >
< ul >
< li > Atmire responded about the issue with duplicate data in our Solr statistics
< ul >
< li > They noticed that some records in the statistics-2015 core haven’ t been migrated with the AtomicStatisticsUpdateCLI tool yet and assumed that I haven’ t migrated any of the records yet< / li >
< li > That’ s strange, as I checked all ten cores and 2015 is the only one with some unmigrated documents, as according to the < code > cua_version< / code > field< / li >
< li > I started processing those (about 411,000 records):< / li >
< / ul >
< / li >
< / ul >
< a href = 'https://alanorth.github.io/cgspace-notes/2020-12/' > Read more →< / a >
< / article >
2018-02-11 17:28:23 +01:00
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< h4 > Recent Posts< / h4 >
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2022-06-06 08:45:43 +02:00
< li > < a href = "/cgspace-notes/2022-06/" > June, 2022< / a > < / li >
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< li > < a href = "/cgspace-notes/2022-05/" > May, 2022< / a > < / li >
2022-04-27 08:58:45 +02:00
< li > < a href = "/cgspace-notes/2022-04/" > April, 2022< / a > < / li >
2022-03-01 15:48:40 +01:00
2022-04-27 08:58:45 +02:00
< li > < a href = "/cgspace-notes/2022-03/" > March, 2022< / a > < / li >
2022-04-04 18:15:58 +02:00
2022-02-10 18:35:40 +01:00
< li > < a href = "/cgspace-notes/2022-02/" > February, 2022< / a > < / li >
2018-02-11 17:28:23 +01:00
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< h4 > Links< / h4 >
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< li > < a href = "https://cgspace.cgiar.org" > CGSpace< / a > < / li >
< li > < a href = "https://dspacetest.cgiar.org" > DSpace Test< / a > < / li >
< li > < a href = "https://github.com/ilri/DSpace" > CGSpace @ GitHub< / a > < / li >
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