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Add notes for 2019-04-14

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Alan Orth 2019-04-14 16:59:47 +03:00
parent b2096b17da
commit b7a72e8f12
Signed by: alanorth
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73 changed files with 130 additions and 201 deletions
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content/posts/2019-04.md
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@ -621,4 +621,28 @@ $ ./delete-metadata-values.py -i /tmp/2019-04-11-delete-6-subjects.csv -db dspac
![Java GC during Solr indexing Solr 4.10.4 settings](/cgspace-notes/2019/04/visualvm-solr-indexing-solr-settings.png)
## 2019-04-14
- Change DSpace Test (linode19) to use the Java GC tuning from the Solr 4.14.4 startup script:
```
GC_TUNE="-XX:NewRatio=3 \
-XX:SurvivorRatio=4 \
-XX:TargetSurvivorRatio=90 \
-XX:MaxTenuringThreshold=8 \
-XX:+UseConcMarkSweepGC \
-XX:+UseParNewGC \
-XX:ConcGCThreads=4 -XX:ParallelGCThreads=4 \
-XX:+CMSScavengeBeforeRemark \
-XX:PretenureSizeThreshold=64m \
-XX:+UseCMSInitiatingOccupancyOnly \
-XX:CMSInitiatingOccupancyFraction=50 \
-XX:CMSMaxAbortablePrecleanTime=6000 \
-XX:+CMSParallelRemarkEnabled \
-XX:+ParallelRefProcEnabled"
```
- I need to remember to check the Munin JVM graphs in a few days
- It might be placebo, but the site *does* feel snappier...
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docs/2015-11/index.html
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@ -65,8 +65,7 @@ $ psql -c &#39;SELECT * from pg_stat_activity;&#39; | grep idle | grep -c cgspac
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<link href="https://alanorth.github.io/cgspace-notes/css/style.css" rel="stylesheet" integrity="sha384-G5B34w7DFTumWTswxYzTX7NWfbvQEg1HbFFEg6ItN03uTAAoS2qkPS/fu3LhuuSA" crossorigin="anonymous">
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docs/2015-12/index.html
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@ -67,8 +67,7 @@ Replace lzop with xz in log compression cron jobs on DSpace Test—it uses less
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@ -57,8 +57,7 @@ Update GitHub wiki for documentation of maintenance tasks.
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docs/2016-02/index.html
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@ -71,8 +71,7 @@ Also, lots of things like &ldquo;COTE D`LVOIRE&rdquo; and &ldquo;COTE D IVOIRE&r
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docs/2016-03/index.html
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@ -57,8 +57,7 @@ Reinstall my local (Mac OS X) DSpace stack with Tomcat 7, PostgreSQL 9.3, and Ja
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<link href="https://alanorth.github.io/cgspace-notes/css/style.css" rel="stylesheet" integrity="sha384-G5B34w7DFTumWTswxYzTX7NWfbvQEg1HbFFEg6ItN03uTAAoS2qkPS/fu3LhuuSA" crossorigin="anonymous">
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docs/2016-04/index.html
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@ -61,8 +61,7 @@ Also, I noticed the checker log has some errors we should pay attention to:
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<link href="https://alanorth.github.io/cgspace-notes/css/style.css" rel="stylesheet" integrity="sha384-G5B34w7DFTumWTswxYzTX7NWfbvQEg1HbFFEg6ItN03uTAAoS2qkPS/fu3LhuuSA" crossorigin="anonymous">
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docs/2016-05/index.html
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@ -65,8 +65,7 @@ There are 3,000 IPs accessing the REST API in a 24-hour period!
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<link href="https://alanorth.github.io/cgspace-notes/css/style.css" rel="stylesheet" integrity="sha384-G5B34w7DFTumWTswxYzTX7NWfbvQEg1HbFFEg6ItN03uTAAoS2qkPS/fu3LhuuSA" crossorigin="anonymous">
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docs/2016-06/index.html
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@ -63,8 +63,7 @@ Working on second phase of metadata migration, looks like this will work for mov
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<link href="https://alanorth.github.io/cgspace-notes/css/style.css" rel="stylesheet" integrity="sha384-G5B34w7DFTumWTswxYzTX7NWfbvQEg1HbFFEg6ItN03uTAAoS2qkPS/fu3LhuuSA" crossorigin="anonymous">
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docs/2016-07/index.html
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@ -79,8 +79,7 @@ In this case the select query was showing 95 results before the update
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<link href="https://alanorth.github.io/cgspace-notes/css/style.css" rel="stylesheet" integrity="sha384-G5B34w7DFTumWTswxYzTX7NWfbvQEg1HbFFEg6ItN03uTAAoS2qkPS/fu3LhuuSA" crossorigin="anonymous">
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docs/2016-08/index.html
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@ -73,8 +73,7 @@ $ git rebase -i dspace-5.5
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<link href="https://alanorth.github.io/cgspace-notes/css/style.css" rel="stylesheet" integrity="sha384-G5B34w7DFTumWTswxYzTX7NWfbvQEg1HbFFEg6ItN03uTAAoS2qkPS/fu3LhuuSA" crossorigin="anonymous">
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docs/2016-09/index.html
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@ -65,8 +65,7 @@ $ ldapsearch -x -H ldaps://svcgroot2.cgiarad.org:3269/ -b &quot;dc=cgiarad,dc=or
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<link href="https://alanorth.github.io/cgspace-notes/css/style.css" rel="stylesheet" integrity="sha384-G5B34w7DFTumWTswxYzTX7NWfbvQEg1HbFFEg6ItN03uTAAoS2qkPS/fu3LhuuSA" crossorigin="anonymous">
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docs/2016-10/index.html
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@ -73,8 +73,7 @@ I exported a random item&rsquo;s metadata as CSV, deleted all columns except id
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@ -57,8 +57,7 @@ Add dc.type to the output options for Atmire&rsquo;s Listings and Reports module
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docs/2016-12/index.html
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@ -81,8 +81,7 @@ Another worrying error from dspace.log is:
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<link href="https://alanorth.github.io/cgspace-notes/css/style.css" rel="stylesheet" integrity="sha384-G5B34w7DFTumWTswxYzTX7NWfbvQEg1HbFFEg6ItN03uTAAoS2qkPS/fu3LhuuSA" crossorigin="anonymous">
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docs/2017-01/index.html
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@ -57,8 +57,7 @@ I asked on the dspace-tech mailing list because it seems to be broken, and actua
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docs/2017-02/index.html
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@ -85,8 +85,7 @@ Looks like we&rsquo;ll be using cg.identifier.ccafsprojectpii as the field name
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<link href="https://alanorth.github.io/cgspace-notes/css/style.css" rel="stylesheet" integrity="sha384-G5B34w7DFTumWTswxYzTX7NWfbvQEg1HbFFEg6ItN03uTAAoS2qkPS/fu3LhuuSA" crossorigin="anonymous">
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docs/2017-03/index.html
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@ -89,8 +89,7 @@ $ identify ~/Desktop/alc_contrastes_desafios.jpg
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docs/2017-04/index.html
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@ -75,8 +75,7 @@ $ [dspace]/bin/dspace filter-media -f -i 10568/16498 -p &quot;ImageMagick PDF Th
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<link href="https://alanorth.github.io/cgspace-notes/css/style.css" rel="stylesheet" integrity="sha384-G5B34w7DFTumWTswxYzTX7NWfbvQEg1HbFFEg6ItN03uTAAoS2qkPS/fu3LhuuSA" crossorigin="anonymous">
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docs/2017-05/index.html
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@ -45,8 +45,7 @@
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<link href="https://alanorth.github.io/cgspace-notes/css/style.css" rel="stylesheet" integrity="sha384-G5B34w7DFTumWTswxYzTX7NWfbvQEg1HbFFEg6ItN03uTAAoS2qkPS/fu3LhuuSA" crossorigin="anonymous">
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docs/2017-06/index.html
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@ -45,8 +45,7 @@
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<link href="https://alanorth.github.io/cgspace-notes/css/style.css" rel="stylesheet" integrity="sha384-G5B34w7DFTumWTswxYzTX7NWfbvQEg1HbFFEg6ItN03uTAAoS2qkPS/fu3LhuuSA" crossorigin="anonymous">
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docs/2017-07/index.html
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@ -69,8 +69,7 @@ We can use PostgreSQL&rsquo;s extended output format (-x) plus sed to format the
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<link href="https://alanorth.github.io/cgspace-notes/css/style.css" rel="stylesheet" integrity="sha384-G5B34w7DFTumWTswxYzTX7NWfbvQEg1HbFFEg6ItN03uTAAoS2qkPS/fu3LhuuSA" crossorigin="anonymous">
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docs/2017-08/index.html
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@ -89,8 +89,7 @@ Then I cleaned up the author authorities and HTML characters in OpenRefine and s
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docs/2017-09/index.html
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@ -65,8 +65,7 @@ Ask Sisay to clean up the WLE approvers a bit, as Marianne&rsquo;s user account
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docs/2017-10/index.html
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@ -69,8 +69,7 @@ Add Katherine Lutz to the groups for content submission and edit steps of the CG
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docs/2017-11/index.html
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@ -89,8 +89,7 @@ COPY 54701
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docs/2017-12/index.html
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@ -59,8 +59,7 @@ The list of connections to XMLUI and REST API for today:
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docs/2018-01/index.html
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@ -197,8 +197,7 @@ Danny wrote to ask for help renewing the wildcard ilri.org certificate and I adv
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docs/2018-02/index.html
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@ -59,8 +59,7 @@ I copied the logic in the jmx_tomcat_dbpools provided by Ubuntu&rsquo;s munin-pl
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docs/2018-03/index.html
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@ -53,8 +53,7 @@ Export a CSV of the IITA community metadata for Martin Mueller
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docs/2018-04/index.html
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@ -55,8 +55,7 @@ Catalina logs at least show some memory errors yesterday:
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docs/2018-05/index.html
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@ -67,8 +67,7 @@ Also, I switched it to use OpenJDK instead of Oracle Java, as well as re-worked
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@ -95,8 +95,7 @@ sys 2m7.289s
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docs/2018-07/index.html
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@ -73,8 +73,7 @@ There is insufficient memory for the Java Runtime Environment to continue.
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docs/2018-08/index.html
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@ -81,8 +81,7 @@ I ran all system updates on DSpace Test and rebooted it
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docs/2018-09/index.html
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@ -59,8 +59,7 @@ I&rsquo;m testing the new DSpace 5.8 branch in my Ubuntu 18.04 environment and I
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@ -55,8 +55,7 @@ I created a GitHub issue to track this #389, because I&rsquo;m super busy in Nai
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docs/2018-11/index.html
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@ -69,8 +69,7 @@ Today these are the top 10 IPs:
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docs/2018-12/index.html
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@ -69,8 +69,7 @@ I noticed that there is another issue with PDF thumbnails on CGSpace, and I see
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docs/2019-01/index.html
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@ -81,8 +81,7 @@ I don&rsquo;t see anything interesting in the web server logs around that time t
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docs/2019-02/index.html
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@ -109,8 +109,7 @@ sys 0m1.979s
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<link href="https://alanorth.github.io/cgspace-notes/css/style.css" rel="stylesheet" integrity="sha384-G5B34w7DFTumWTswxYzTX7NWfbvQEg1HbFFEg6ItN03uTAAoS2qkPS/fu3LhuuSA" crossorigin="anonymous">
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docs/2019-03/index.html
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@ -75,8 +75,7 @@ I think I will need to ask Udana to re-copy and paste the abstracts with more ca
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docs/2019-04/index.html
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@ -38,7 +38,7 @@ $ ./delete-metadata-values.py -i /tmp/2019-02-21-delete-1-region.csv -db dspace
<meta property="og:type" content="article" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/2019-04/" />
<meta property="article:published_time" content="2019-04-01T09:00:43&#43;03:00"/>
<meta property="article:modified_time" content="2019-04-11T14:23:30&#43;03:00"/>
<meta property="article:modified_time" content="2019-04-13T12:15:55&#43;03:00"/>
<meta name="twitter:card" content="summary"/>
<meta name="twitter:title" content="April, 2019"/>
@ -81,9 +81,9 @@ $ ./delete-metadata-values.py -i /tmp/2019-02-21-delete-1-region.csv -db dspace
"@type": "BlogPosting",
"headline": "April, 2019",
"url": "https:\/\/alanorth.github.io\/cgspace-notes\/2019-04\/",
"wordCount": "3655",
"wordCount": "3724",
"datePublished": "2019-04-01T09:00:43\x2b03:00",
"dateModified": "2019-04-11T14:23:30\x2b03:00",
"dateModified": "2019-04-13T12:15:55\x2b03:00",
"author": {
"@type": "Person",
"name": "Alan Orth"
@ -101,8 +101,7 @@ $ ./delete-metadata-values.py -i /tmp/2019-02-21-delete-1-region.csv -db dspace
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@ -890,6 +889,33 @@ $ ./delete-metadata-values.py -i /tmp/2019-04-11-delete-6-subjects.csv -db dspac
<p><img src="/cgspace-notes/2019/04/visualvm-solr-indexing-solr-settings.png" alt="Java GC during Solr indexing Solr 4.10.4 settings" /></p>
<h2 id="2019-04-14">2019-04-14</h2>
<ul>
<li>Change DSpace Test (linode19) to use the Java GC tuning from the Solr 4.14.4 startup script:</li>
</ul>
<pre><code>GC_TUNE=&quot;-XX:NewRatio=3 \
-XX:SurvivorRatio=4 \
-XX:TargetSurvivorRatio=90 \
-XX:MaxTenuringThreshold=8 \
-XX:+UseConcMarkSweepGC \
-XX:+UseParNewGC \
-XX:ConcGCThreads=4 -XX:ParallelGCThreads=4 \
-XX:+CMSScavengeBeforeRemark \
-XX:PretenureSizeThreshold=64m \
-XX:+UseCMSInitiatingOccupancyOnly \
-XX:CMSInitiatingOccupancyFraction=50 \
-XX:CMSMaxAbortablePrecleanTime=6000 \
-XX:+CMSParallelRemarkEnabled \
-XX:+ParallelRefProcEnabled&quot;
</code></pre>
<ul>
<li>I need to remember to check the Munin JVM graphs in a few days</li>
<li>It might be placebo, but the site <em>does</em> feel snappier&hellip;</li>
</ul>
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