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Alan Orth 2021-11-01 10:49:21 +02:00
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commit b04ec94cbe
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GPG Key ID: 0FB860CC9C45B1B9
112 changed files with 2046 additions and 1735 deletions
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content/posts/2021-11.md Normal file
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@ -0,0 +1,12 @@
---
title: "November, 2021"
date: 2021-11-01T11:14:07+03:00
author: "Alan Orth"
categories: ["Notes"]
---
## 2021-11-01
<!--more-->
<!-- vim: set sw=2 ts=2: -->

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docs/2015-11/index.html
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@ -242,16 +242,16 @@ db.statementpool = true
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
</ol>
</section>

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docs/2015-12/index.html
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@ -264,16 +264,16 @@ $ curl -o /dev/null -s -w %{time_total}\\n https://cgspace.cgiar.org/rest/handle
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
</ol>
</section>

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docs/2016-01/index.html
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@ -200,16 +200,16 @@ $ find SimpleArchiveForBio/ -iname &ldquo;*.pdf&rdquo; -exec basename {} ; | sor
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
</ol>
</section>

8
docs/2016-02/index.html
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@ -378,16 +378,16 @@ Bitstream: tést señora alimentación.pdf
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
</ol>
</section>

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docs/2016-03/index.html
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@ -316,16 +316,16 @@ Reinstall my local (Mac OS X) DSpace stack with Tomcat 7, PostgreSQL 9.3, and Ja
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
</ol>
</section>

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docs/2016-04/index.html
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@ -495,16 +495,16 @@ dspace.log.2016-04-27:7271
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
</ol>
</section>

8
docs/2016-05/index.html
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@ -371,16 +371,16 @@ sys 0m20.540s
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
</ol>
</section>

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docs/2016-06/index.html
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@ -409,16 +409,16 @@ $ ./delete-metadata-values.py -f dc.contributor.corporate -i Corporate-Authors-D
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
</ol>
</section>

8
docs/2016-07/index.html
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@ -325,16 +325,16 @@ discovery.index.authority.ignore-variants=true
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
</ol>
</section>

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docs/2016-08/index.html
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@ -389,16 +389,16 @@ $ JAVA_OPTS=&quot;-Dfile.encoding=UTF-8 -Xmx512m&quot; /home/cgspace.cgiar.org/b
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
</ol>
</section>

8
docs/2016-09/index.html
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@ -606,16 +606,16 @@ $ ./delete-metadata-values.py -i ilrisubjects-delete-13.csv -f cg.subject.ilri -
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
</ol>
</section>

8
docs/2016-10/index.html
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@ -372,16 +372,16 @@ dspace=# update metadatavalue set text_value = regexp_replace(text_value, 'http:
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
</ol>
</section>

8
docs/2016-11/index.html
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@ -548,16 +548,16 @@ org.dspace.discovery.SearchServiceException: Error executing query
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
</ol>
</section>

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docs/2016-12/index.html
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@ -784,16 +784,16 @@ $ exit
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
</ol>
</section>

8
docs/2017-01/index.html
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@ -369,16 +369,16 @@ $ gs -sDEVICE=pdfwrite -dCompatibilityLevel=1.4 -dPDFSETTINGS=/ebook -dNOPAUSE -
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
</ol>
</section>

8
docs/2017-02/index.html
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@ -424,16 +424,16 @@ COPY 1968
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
</ol>
</section>

8
docs/2017-03/index.html
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@ -355,16 +355,16 @@ $ ./delete-metadata-values.py -i Investors-Delete-121.csv -f dc.description.spon
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
</ol>
</section>

8
docs/2017-04/index.html
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@ -585,16 +585,16 @@ $ gem install compass -v 1.0.3
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
</ol>
</section>

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docs/2017-05/index.html
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@ -391,16 +391,16 @@ UPDATE 187
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
</ol>
</section>

8
docs/2017-06/index.html
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@ -270,16 +270,16 @@ $ JAVA_OPTS=&quot;-Xmx1024m -Dfile.encoding=UTF-8&quot; [dspace]/bin/dspace impo
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
</ol>
</section>

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docs/2017-07/index.html
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@ -275,16 +275,16 @@ delete from metadatavalue where resource_type_id=2 and metadata_field_id=235 and
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
</ol>
</section>

8
docs/2017-08/index.html
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@ -517,16 +517,16 @@ org.apache.commons.dbcp.SQLNestedException: Cannot get a connection, pool error
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
</ol>
</section>

8
docs/2017-09/index.html
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@ -659,16 +659,16 @@ Cert Status: good
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
</ol>
</section>

8
docs/2017-10/index.html
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@ -443,16 +443,16 @@ session_id=6C30F10B4351A4ED83EC6ED50AFD6B6A
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
</ol>
</section>

8
docs/2017-11/index.html
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@ -944,16 +944,16 @@ $ cat dspace.log.2017-11-28 | grep -o -E 'session_id=[A-Z0-9]{32}' | sort -n | u
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
</ol>
</section>

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docs/2017-12/index.html
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@ -783,16 +783,16 @@ DELETE 20
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
</ol>
</section>

8
docs/2018-01/index.html
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@ -1452,16 +1452,16 @@ Catalina:type=Manager,context=/,host=localhost activeSessions 8
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
</ol>
</section>

8
docs/2018-02/index.html
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@ -1039,16 +1039,16 @@ UPDATE 3
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
</ol>
</section>

8
docs/2018-03/index.html
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@ -585,16 +585,16 @@ Fixed 5 occurences of: GENEBANKS
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
</ol>
</section>

8
docs/2018-04/index.html
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@ -594,16 +594,16 @@ $ pg_restore -O -U dspacetest -d dspacetest -W -h localhost /tmp/dspace_2018-04-
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
</ol>
</section>

8
docs/2018-05/index.html
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@ -523,16 +523,16 @@ $ psql -h localhost -U postgres dspacetest
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
</ol>
</section>

8
docs/2018-06/index.html
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@ -517,16 +517,16 @@ $ sed '/^id/d' 10568-*.csv | csvcut -c 1,2 &gt; map-to-cifor-archive.csv
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
</ol>
</section>

8
docs/2018-07/index.html
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@ -569,16 +569,16 @@ dspace=# select count(text_value) from metadatavalue where resource_type_id=2 an
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
</ol>
</section>

8
docs/2018-08/index.html
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@ -442,16 +442,16 @@ $ dspace database migrate ignored
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
</ol>
</section>

8
docs/2018-09/index.html
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@ -748,16 +748,16 @@ UPDATE metadatavalue SET text_value='ja' WHERE resource_type_id=2 AND metadata_f
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
</ol>
</section>

8
docs/2018-10/index.html
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@ -656,16 +656,16 @@ $ curl -X GET -H &quot;Content-Type: application/json&quot; -H &quot;Accept: app
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
</ol>
</section>

8
docs/2018-11/index.html
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@ -553,16 +553,16 @@ $ dspace dsrun org.dspace.eperson.Groomer -a -b 11/27/2016 -d
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
</ol>
</section>

8
docs/2018-12/index.html
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@ -594,16 +594,16 @@ UPDATE 1
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
</ol>
</section>

8
docs/2019-01/index.html
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@ -1264,16 +1264,16 @@ identify: CorruptImageProfile `xmp' @ warning/profile.c/SetImageProfileInternal/
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
</ol>
</section>

8
docs/2019-02/index.html
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@ -1344,16 +1344,16 @@ Please see the DSpace documentation for assistance.
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
</ol>
</section>

8
docs/2019-03/index.html
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@ -1208,16 +1208,16 @@ sys 0m2.551s
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
</ol>
</section>

8
docs/2019-04/index.html
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@ -1299,16 +1299,16 @@ UPDATE 14
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
</ol>
</section>

8
docs/2019-05/index.html
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@ -631,16 +631,16 @@ COPY 64871
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
</ol>
</section>

8
docs/2019-06/index.html
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@ -317,16 +317,16 @@ UPDATE 2
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
</ol>
</section>

8
docs/2019-07/index.html
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@ -554,16 +554,16 @@ issn.validate('1020-3362')
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
</ol>
</section>

8
docs/2019-08/index.html
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@ -573,16 +573,16 @@ sys 2m27.496s
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
</ol>
</section>

8
docs/2019-09/index.html
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@ -581,16 +581,16 @@ $ csv-metadata-quality -i /tmp/clarisa-institutions.csv -o /tmp/clarisa-institut
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
</ol>
</section>

8
docs/2019-10/index.html
View File

@ -385,16 +385,16 @@ $ dspace import -a -c 10568/104057 -e fuu@cgiar.org -m 2019-10-15-Bioversity.map
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
</ol>
</section>

8
docs/2019-11/index.html
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@ -692,16 +692,16 @@ $ tidy -xml -utf8 -iq -m -w 0 dspace/config/controlled-vocabularies/cg-creator-i
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
</ol>
</section>

8
docs/2019-12/index.html
View File

@ -404,16 +404,16 @@ UPDATE 1
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
</ol>
</section>

8
docs/2020-01/index.html
View File

@ -604,16 +604,16 @@ COPY 2900
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
</ol>
</section>

8
docs/2020-02/index.html
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@ -1275,16 +1275,16 @@ Moving: 21993 into core statistics-2019
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
</ol>
</section>

8
docs/2020-03/index.html
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@ -484,16 +484,16 @@ $ tidy -xml -utf8 -iq -m -w 0 dspace/config/controlled-vocabularies/cg-creator-i
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
</ol>
</section>

8
docs/2020-04/index.html
View File

@ -658,16 +658,16 @@ $ psql -c 'select * from pg_stat_activity' | wc -l
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
</ol>
</section>

8
docs/2020-05/index.html
View File

@ -477,16 +477,16 @@ Caused by: java.lang.NullPointerException
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
</ol>
</section>

8
docs/2020-06/index.html
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@ -811,16 +811,16 @@ $ csvcut -c 'id,cg.subject.ilri[],cg.subject.ilri[en_US],dc.subject[en_US]' /tmp
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
</ol>
</section>

8
docs/2020-07/index.html
View File

@ -1142,16 +1142,16 @@ Fixed 4 occurences of: Muloi, D.M.
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
</ol>
</section>

8
docs/2020-08/index.html
View File

@ -798,16 +798,16 @@ $ grep -c added /tmp/2020-08-27-countrycodetagger.log
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
</ol>
</section>

8
docs/2020-09/index.html
View File

@ -717,16 +717,16 @@ solr_query_params = {
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
</ol>
</section>

8
docs/2020-10/index.html
View File

@ -1241,16 +1241,16 @@ $ ./delete-metadata-values.py -i 2020-10-31-delete-74-sponsors.csv -db dspace -u
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
</ol>
</section>

8
docs/2020-11/index.html
View File

@ -731,16 +731,16 @@ $ ./fix-metadata-values.py -i 2020-11-30-fix-hung-orcid.csv -db dspace63 -u dspa
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
</ol>
</section>

8
docs/2020-12/index.html
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@ -869,16 +869,16 @@ $ curl -XDELETE 'http://localhost:9200/openrxv-items-2020-12-29?pretty'
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
</ol>
</section>

8
docs/2021-01/index.html
View File

@ -688,16 +688,16 @@ java.lang.IllegalArgumentException: Invalid character found in the request targe
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
</ol>
</section>

8
docs/2021-02/index.html
View File

@ -898,16 +898,16 @@ dspace.log.2021-02-28:0
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
</ol>
</section>

8
docs/2021-03/index.html
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@ -875,16 +875,16 @@ COPY 3081
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
</ol>
</section>

8
docs/2021-04/index.html
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@ -1042,16 +1042,16 @@ $ ./ilri/doi-to-handle.py -i /tmp/dois.txt -o /tmp/handles.csv -db dspace63 -u d
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
</ol>
</section>

8
docs/2021-05/index.html
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@ -685,16 +685,16 @@ Please see the DSpace documentation for assistance.
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
</ol>
</section>

8
docs/2021-06/index.html
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@ -693,16 +693,16 @@ COPY 1710
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
</ol>
</section>

8
docs/2021-07/index.html
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@ -715,16 +715,16 @@ $ cat AS* /tmp/ddos-networks-to-block.txt | sed -e '/^$/d' -e '/^#/d' -e '/^{/d'
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
</ol>
</section>

8
docs/2021-08/index.html
View File

@ -606,16 +606,16 @@ $ ./ilri/add-orcid-identifiers-csv.py -i 2021-08-25-add-orcids.csv -db dspace -u
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
</ol>
</section>

8
docs/2021-09/index.html
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@ -588,16 +588,16 @@ $ csvcut -c subject,'match type' /tmp/2021-09-29-ilri-subjects.csv | sed -e 's/m
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
</ol>
</section>

61
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@ -6,13 +6,8 @@
<meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no">
<meta property="og:title" content="" />
<meta property="og:description" content="e&ndash;
title: &ldquo;October, 2021&rdquo;
date: 2021-10-01T11:14:07&#43;03:00
author: &ldquo;Alan Orth&rdquo;
categories: [&ldquo;Notes&rdquo;]
2021-10-01
<meta property="og:title" content="October, 2021" />
<meta property="og:description" content="2021-10-01
Export all affiliations on CGSpace and run them against the latest RoR data dump:
@ -28,19 +23,15 @@ $ wc -l /tmp/2021-10-01-affiliations.txt
So we have 1879/7100 (26.46%) matching already
" />
<meta property="og:type" content="article" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/1-01/" />
<meta property="article:modified_time" content="2021-10-28T18:08:13+03:00" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/2021-10/" />
<meta property="article:published_time" content="2021-10-01T11:14:07+03:00" />
<meta property="article:modified_time" content="2021-11-01T10:48:13+02:00" />
<meta name="twitter:card" content="summary"/>
<meta name="twitter:title" content=""/>
<meta name="twitter:description" content="e&ndash;
title: &ldquo;October, 2021&rdquo;
date: 2021-10-01T11:14:07&#43;03:00
author: &ldquo;Alan Orth&rdquo;
categories: [&ldquo;Notes&rdquo;]
2021-10-01
<meta name="twitter:title" content="October, 2021"/>
<meta name="twitter:description" content="2021-10-01
Export all affiliations on CGSpace and run them against the latest RoR data dump:
@ -63,23 +54,24 @@ So we have 1879/7100 (26.46%) matching already
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"keywords": "Notes"
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</script>
<link rel="canonical" href="https://alanorth.github.io/cgspace-notes/1-01/">
<link rel="canonical" href="https://alanorth.github.io/cgspace-notes/2021-10/">
<title> | CGSpace Notes</title>
<title>October, 2021 | CGSpace Notes</title>
<!-- combined, minified CSS -->
@ -131,17 +123,16 @@ So we have 1879/7100 (26.46%) matching already
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/1-01/"></a></h2>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2021-10/">October, 2021</a></h2>
<p class="blog-post-meta">
<time datetime="2021-10-01T11:14:07+03:00">Fri Oct 01, 2021</time>
in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="categories-notes">e&ndash;
title: &ldquo;October, 2021&rdquo;
date: 2021-10-01T11:14:07+03:00
author: &ldquo;Alan Orth&rdquo;
categories: [&ldquo;Notes&rdquo;]</h2>
<h2 id="2021-10-01">2021-10-01</h2>
<h2 id="2021-10-01">2021-10-01</h2>
<ul>
<li>Export all affiliations on CGSpace and run them against the latest RoR data dump:</li>
</ul>
@ -800,16 +791,16 @@ Total number of bot hits purged: 17786
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
</ol>
</section>

180
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@ -0,0 +1,180 @@
<!DOCTYPE html>
<html lang="en" >
<head>
<meta charset="utf-8">
<meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no">
<meta property="og:title" content="November, 2021" />
<meta property="og:description" content="2021-11-01" />
<meta property="og:type" content="article" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/2021-11/" />
<meta property="article:published_time" content="2021-11-01T11:14:07+03:00" />
<meta property="article:modified_time" content="2021-11-01T11:14:07+03:00" />
<meta name="twitter:card" content="summary"/>
<meta name="twitter:title" content="November, 2021"/>
<meta name="twitter:description" content="2021-11-01"/>
<meta name="generator" content="Hugo 0.88.1" />
<script type="application/ld+json">
{
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<link rel="canonical" href="https://alanorth.github.io/cgspace-notes/2021-11/">
<title>November, 2021 | CGSpace Notes</title>
<!-- combined, minified CSS -->
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<script defer src="https://alanorth.github.io/cgspace-notes/js/fontawesome.min.f5072c55a0721857184db93a50561d7dc13975b4de2e19db7f81eb5f3fa57270.js" integrity="sha256-9QcsVaByGFcYTbk6UFYdfcE5dbTeLhnbf4HrXz&#43;lcnA=" crossorigin="anonymous"></script>
<!-- RSS 2.0 feed -->
</head>
<body>
<div class="blog-masthead">
<div class="container">
<nav class="nav blog-nav">
<a class="nav-link " href="https://alanorth.github.io/cgspace-notes/">Home</a>
</nav>
</div>
</div>
<header class="blog-header">
<div class="container">
<h1 class="blog-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/" rel="home">CGSpace Notes</a></h1>
<p class="lead blog-description" dir="auto">Documenting day-to-day work on the <a href="https://cgspace.cgiar.org">CGSpace</a> repository.</p>
</div>
</header>
<div class="container">
<div class="row">
<div class="col-sm-8 blog-main">
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2021-11/">November, 2021</a></h2>
<p class="blog-post-meta">
<time datetime="2021-11-01T11:14:07+03:00">Mon Nov 01, 2021</time>
in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2021-11-01">2021-11-01</h2>
<!-- raw HTML omitted -->
</article>
</div> <!-- /.blog-main -->
<aside class="col-sm-3 ml-auto blog-sidebar">
<section class="sidebar-module">
<h4>Recent Posts</h4>
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
</ol>
</section>
<section class="sidebar-module">
<h4>Links</h4>
<ol class="list-unstyled">
<li><a href="https://cgspace.cgiar.org">CGSpace</a></li>
<li><a href="https://dspacetest.cgiar.org">DSpace Test</a></li>
<li><a href="https://github.com/ilri/DSpace">CGSpace @ GitHub</a></li>
</ol>
</section>
</aside>
</div> <!-- /.row -->
</div> <!-- /.container -->
<footer class="blog-footer">
<p dir="auto">
Blog template created by <a href="https://twitter.com/mdo">@mdo</a>, ported to Hugo by <a href='https://twitter.com/mralanorth'>@mralanorth</a>.
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8
docs/404.html
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@ -95,16 +95,16 @@
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
</ol>
</section>

12
docs/categories/index.html
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@ -10,7 +10,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/" />
<meta property="og:updated_time" content="2021-10-04T11:10:54+03:00" />
<meta property="og:updated_time" content="2021-11-01T10:48:13+02:00" />
@ -84,7 +84,7 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/categories/notes/">Notes</a></h2>
<p class="blog-post-meta"><time datetime="2021-09-01T09:14:07+03:00">Wed Sep 01, 2021</time> by Alan Orth</p>
<p class="blog-post-meta"><time datetime="2021-11-01T11:14:07+03:00">Mon Nov 01, 2021</time> by Alan Orth</p>
</header>
<a href='https://alanorth.github.io/cgspace-notes/categories/notes/'>Read more →</a>
@ -108,16 +108,16 @@
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
</ol>
</section>

4
docs/categories/index.xml
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@ -6,11 +6,11 @@
<description>Recent content in Categories on CGSpace Notes</description>
<generator>Hugo -- gohugo.io</generator>
<language>en-us</language>
<lastBuildDate>Wed, 01 Sep 2021 09:14:07 +0300</lastBuildDate><atom:link href="https://alanorth.github.io/cgspace-notes/categories/index.xml" rel="self" type="application/rss+xml" />
<lastBuildDate>Mon, 01 Nov 2021 11:14:07 +0300</lastBuildDate><atom:link href="https://alanorth.github.io/cgspace-notes/categories/index.xml" rel="self" type="application/rss+xml" />
<item>
<title>Notes</title>
<link>https://alanorth.github.io/cgspace-notes/categories/notes/</link>
<pubDate>Wed, 01 Sep 2021 09:14:07 +0300</pubDate>
<pubDate>Mon, 01 Nov 2021 11:14:07 +0300</pubDate>
<guid>https://alanorth.github.io/cgspace-notes/categories/notes/</guid>
<description></description>

133
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@ -10,7 +10,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/notes/" />
<meta property="og:updated_time" content="2021-10-04T11:10:54+03:00" />
<meta property="og:updated_time" content="2021-11-01T10:48:13+02:00" />
@ -81,6 +81,56 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2021-11/">November, 2021</a></h2>
<p class="blog-post-meta"><time datetime="2021-11-01T11:14:07+03:00">Mon Nov 01, 2021</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2021-11-01">2021-11-01</h2>
<a href='https://alanorth.github.io/cgspace-notes/2021-11/'>Read more →</a>
</article>
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2021-10/">October, 2021</a></h2>
<p class="blog-post-meta"><time datetime="2021-10-01T11:14:07+03:00">Fri Oct 01, 2021</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2021-10-01">2021-10-01</h2>
<ul>
<li>Export all affiliations on CGSpace and run them against the latest RoR data dump:</li>
</ul>
<pre tabindex="0"><code class="language-console" data-lang="console">localhost/dspace63= &gt; \COPY (SELECT DISTINCT text_value as &quot;cg.contributor.affiliation&quot;, count(*) FROM metadatavalue WHERE dspace_object_id IN (SELECT uuid FROM item) AND metadata_field_id = 211 GROUP BY text_value ORDER BY count DESC) to /tmp/2021-10-01-affiliations.csv WITH CSV HEADER;
$ csvcut -c 1 /tmp/2021-10-01-affiliations.csv | sed 1d &gt; /tmp/2021-10-01-affiliations.txt
$ ./ilri/ror-lookup.py -i /tmp/2021-10-01-affiliations.txt -r 2021-09-23-ror-data.json -o /tmp/2021-10-01-affili
ations-matching.csv
$ csvgrep -c matched -m true /tmp/2021-10-01-affiliations-matching.csv | sed 1d | wc -l
1879
$ wc -l /tmp/2021-10-01-affiliations.txt
7100 /tmp/2021-10-01-affiliations.txt
</code></pre><ul>
<li>So we have 1879/7100 (26.46%) matching already</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2021-10/'>Read more →</a>
</article>
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2021-09/">September, 2021</a></h2>
@ -294,79 +344,6 @@ COPY 20994
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2021-02/">February, 2021</a></h2>
<p class="blog-post-meta"><time datetime="2021-02-01T10:13:54+02:00">Mon Feb 01, 2021</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2021-02-01">2021-02-01</h2>
<ul>
<li>Abenet said that CIP found more duplicate records in their export from AReS
<ul>
<li>I re-opened <a href="https://github.com/ilri/OpenRXV/issues/67">the issue</a> on OpenRXV where we had previously noticed this</li>
<li>The shared link where the duplicates are is here: <a href="https://cgspace.cgiar.org/explorer/shared/heEOz3YBnXdK69bR2ra6">https://cgspace.cgiar.org/explorer/shared/heEOz3YBnXdK69bR2ra6</a></li>
</ul>
</li>
<li>I had a call with CodeObia to discuss the work on OpenRXV</li>
<li>Check the results of the AReS harvesting from last night:</li>
</ul>
<pre tabindex="0"><code class="language-console" data-lang="console">$ curl -s 'http://localhost:9200/openrxv-items-temp/_count?q=*&amp;pretty'
{
&quot;count&quot; : 100875,
&quot;_shards&quot; : {
&quot;total&quot; : 1,
&quot;successful&quot; : 1,
&quot;skipped&quot; : 0,
&quot;failed&quot; : 0
}
}
</code></pre>
<a href='https://alanorth.github.io/cgspace-notes/2021-02/'>Read more →</a>
</article>
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2021-01/">January, 2021</a></h2>
<p class="blog-post-meta"><time datetime="2021-01-03T10:13:54+02:00">Sun Jan 03, 2021</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2021-01-03">2021-01-03</h2>
<ul>
<li>Peter notified me that some filters on AReS were broken again
<ul>
<li>It&rsquo;s the same issue with the field names getting <code>.keyword</code> appended to the end that I already <a href="https://github.com/ilri/OpenRXV/issues/66">filed an issue on OpenRXV about last month</a></li>
<li>I fixed the broken filters (careful to not edit any others, lest they break too!)</li>
</ul>
</li>
<li>Fix an issue with start page number for the DSpace REST API and statistics API in OpenRXV
<ul>
<li>The start page had been &ldquo;1&rdquo; in the UI, but in the backend they were doing some gymnastics to adjust to the zero-based offset/limit/page of the DSpace REST API and the statistics API</li>
<li>I adjusted it to default to 0 and added a note to the admin screen</li>
<li>I realized that this issue was actually causing the first page of 100 statistics to be missing&hellip;</li>
<li>For example, <a href="https://cgspace.cgiar.org/handle/10568/66839">this item</a> has 51 views on CGSpace, but 0 on AReS</li>
</ul>
</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2021-01/'>Read more →</a>
</article>
<nav class="blog-pagination">
@ -391,16 +368,16 @@ COPY 20994
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
</ol>
</section>

34
docs/categories/notes/index.xml
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@ -6,7 +6,39 @@
<description>Recent content in Notes on CGSpace Notes</description>
<generator>Hugo -- gohugo.io</generator>
<language>en-us</language>
<lastBuildDate>Wed, 01 Sep 2021 09:14:07 +0300</lastBuildDate><atom:link href="https://alanorth.github.io/cgspace-notes/categories/notes/index.xml" rel="self" type="application/rss+xml" />
<lastBuildDate>Mon, 01 Nov 2021 11:14:07 +0300</lastBuildDate><atom:link href="https://alanorth.github.io/cgspace-notes/categories/notes/index.xml" rel="self" type="application/rss+xml" />
<item>
<title>November, 2021</title>
<link>https://alanorth.github.io/cgspace-notes/2021-11/</link>
<pubDate>Mon, 01 Nov 2021 11:14:07 +0300</pubDate>
<guid>https://alanorth.github.io/cgspace-notes/2021-11/</guid>
<description>&lt;h2 id=&#34;2021-11-01&#34;&gt;2021-11-01&lt;/h2&gt;</description>
</item>
<item>
<title>October, 2021</title>
<link>https://alanorth.github.io/cgspace-notes/2021-10/</link>
<pubDate>Fri, 01 Oct 2021 11:14:07 +0300</pubDate>
<guid>https://alanorth.github.io/cgspace-notes/2021-10/</guid>
<description>&lt;h2 id=&#34;2021-10-01&#34;&gt;2021-10-01&lt;/h2&gt;
&lt;ul&gt;
&lt;li&gt;Export all affiliations on CGSpace and run them against the latest RoR data dump:&lt;/li&gt;
&lt;/ul&gt;
&lt;pre tabindex=&#34;0&#34;&gt;&lt;code class=&#34;language-console&#34; data-lang=&#34;console&#34;&gt;localhost/dspace63= &amp;gt; \COPY (SELECT DISTINCT text_value as &amp;quot;cg.contributor.affiliation&amp;quot;, count(*) FROM metadatavalue WHERE dspace_object_id IN (SELECT uuid FROM item) AND metadata_field_id = 211 GROUP BY text_value ORDER BY count DESC) to /tmp/2021-10-01-affiliations.csv WITH CSV HEADER;
$ csvcut -c 1 /tmp/2021-10-01-affiliations.csv | sed 1d &amp;gt; /tmp/2021-10-01-affiliations.txt
$ ./ilri/ror-lookup.py -i /tmp/2021-10-01-affiliations.txt -r 2021-09-23-ror-data.json -o /tmp/2021-10-01-affili
ations-matching.csv
$ csvgrep -c matched -m true /tmp/2021-10-01-affiliations-matching.csv | sed 1d | wc -l
1879
$ wc -l /tmp/2021-10-01-affiliations.txt
7100 /tmp/2021-10-01-affiliations.txt
&lt;/code&gt;&lt;/pre&gt;&lt;ul&gt;
&lt;li&gt;So we have 1879/7100 (26.46%) matching already&lt;/li&gt;
&lt;/ul&gt;</description>
</item>
<item>
<title>September, 2021</title>
<link>https://alanorth.github.io/cgspace-notes/2021-09/</link>

142
docs/categories/notes/page/2/index.html
View File

@ -10,7 +10,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/notes/" />
<meta property="og:updated_time" content="2021-10-04T11:10:54+03:00" />
<meta property="og:updated_time" content="2021-11-01T10:48:13+02:00" />
@ -81,6 +81,79 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2021-02/">February, 2021</a></h2>
<p class="blog-post-meta"><time datetime="2021-02-01T10:13:54+02:00">Mon Feb 01, 2021</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2021-02-01">2021-02-01</h2>
<ul>
<li>Abenet said that CIP found more duplicate records in their export from AReS
<ul>
<li>I re-opened <a href="https://github.com/ilri/OpenRXV/issues/67">the issue</a> on OpenRXV where we had previously noticed this</li>
<li>The shared link where the duplicates are is here: <a href="https://cgspace.cgiar.org/explorer/shared/heEOz3YBnXdK69bR2ra6">https://cgspace.cgiar.org/explorer/shared/heEOz3YBnXdK69bR2ra6</a></li>
</ul>
</li>
<li>I had a call with CodeObia to discuss the work on OpenRXV</li>
<li>Check the results of the AReS harvesting from last night:</li>
</ul>
<pre tabindex="0"><code class="language-console" data-lang="console">$ curl -s 'http://localhost:9200/openrxv-items-temp/_count?q=*&amp;pretty'
{
&quot;count&quot; : 100875,
&quot;_shards&quot; : {
&quot;total&quot; : 1,
&quot;successful&quot; : 1,
&quot;skipped&quot; : 0,
&quot;failed&quot; : 0
}
}
</code></pre>
<a href='https://alanorth.github.io/cgspace-notes/2021-02/'>Read more →</a>
</article>
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2021-01/">January, 2021</a></h2>
<p class="blog-post-meta"><time datetime="2021-01-03T10:13:54+02:00">Sun Jan 03, 2021</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2021-01-03">2021-01-03</h2>
<ul>
<li>Peter notified me that some filters on AReS were broken again
<ul>
<li>It&rsquo;s the same issue with the field names getting <code>.keyword</code> appended to the end that I already <a href="https://github.com/ilri/OpenRXV/issues/66">filed an issue on OpenRXV about last month</a></li>
<li>I fixed the broken filters (careful to not edit any others, lest they break too!)</li>
</ul>
</li>
<li>Fix an issue with start page number for the DSpace REST API and statistics API in OpenRXV
<ul>
<li>The start page had been &ldquo;1&rdquo; in the UI, but in the backend they were doing some gymnastics to adjust to the zero-based offset/limit/page of the DSpace REST API and the statistics API</li>
<li>I adjusted it to default to 0 and added a note to the admin screen</li>
<li>I realized that this issue was actually causing the first page of 100 statistics to be missing&hellip;</li>
<li>For example, <a href="https://cgspace.cgiar.org/handle/10568/66839">this item</a> has 51 views on CGSpace, but 0 on AReS</li>
</ul>
</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2021-01/'>Read more →</a>
</article>
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2020-12/">December, 2020</a></h2>
@ -298,65 +371,6 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2020-05/">May, 2020</a></h2>
<p class="blog-post-meta"><time datetime="2020-05-02T09:52:04+03:00">Sat May 02, 2020</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2020-05-02">2020-05-02</h2>
<ul>
<li>Peter said that CTA is having problems submitting an item to CGSpace
<ul>
<li>Looking at the PostgreSQL stats it seems to be the same issue that Tezira was having last week, as I see the number of connections in &lsquo;idle in transaction&rsquo; and &lsquo;waiting for lock&rsquo; state are increasing again</li>
<li>I see that CGSpace (linode18) is still using PostgreSQL JDBC driver version 42.2.11, and there were some bugs related to transactions fixed in 42.2.12 (which I had updated in the Ansible playbooks, but not deployed yet)</li>
</ul>
</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2020-05/'>Read more →</a>
</article>
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2020-04/">April, 2020</a></h2>
<p class="blog-post-meta"><time datetime="2020-04-02T10:53:24+03:00">Thu Apr 02, 2020</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2020-04-02">2020-04-02</h2>
<ul>
<li>Maria asked me to update Charles Staver&rsquo;s ORCID iD in the submission template and on CGSpace, as his name was lower case before, and now he has corrected it
<ul>
<li>I updated the fifty-eight existing items on CGSpace</li>
</ul>
</li>
<li>Looking into the items Udana had asked about last week that were missing Altmetric donuts:
<ul>
<li><a href="https://hdl.handle.net/10568/103225">The first</a> is still missing its DOI, so I added it and <a href="https://twitter.com/mralanorth/status/1245632619661766657">tweeted its handle</a> (after a few hours there was a donut with score 222)</li>
<li><a href="https://hdl.handle.net/10568/106899">The second item</a> now has a donut with score 2 since I <a href="https://twitter.com/mralanorth/status/1243158045540134913">tweeted its handle</a> last week</li>
<li><a href="https://hdl.handle.net/10568/107258">The third item</a> now has a donut with score 1 since I <a href="https://twitter.com/mralanorth/status/1243158786392625153">tweeted it</a> last week</li>
</ul>
</li>
<li>On the same note, the <a href="https://hdl.handle.net/10568/106573">one item</a> Abenet pointed out last week now has a donut with score of 104 after I <a href="https://twitter.com/mralanorth/status/1243163710241345536">tweeted it</a> last week</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2020-04/'>Read more →</a>
</article>
<nav class="blog-pagination">
<a class="btn btn-outline-primary" href="/cgspace-notes/categories/notes/" rel="prev" role="button">Previous page</a>
@ -381,16 +395,16 @@
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
</ol>
</section>

123
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@ -10,7 +10,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/notes/" />
<meta property="og:updated_time" content="2021-10-04T11:10:54+03:00" />
<meta property="og:updated_time" content="2021-11-01T10:48:13+02:00" />
@ -81,6 +81,65 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2020-05/">May, 2020</a></h2>
<p class="blog-post-meta"><time datetime="2020-05-02T09:52:04+03:00">Sat May 02, 2020</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2020-05-02">2020-05-02</h2>
<ul>
<li>Peter said that CTA is having problems submitting an item to CGSpace
<ul>
<li>Looking at the PostgreSQL stats it seems to be the same issue that Tezira was having last week, as I see the number of connections in &lsquo;idle in transaction&rsquo; and &lsquo;waiting for lock&rsquo; state are increasing again</li>
<li>I see that CGSpace (linode18) is still using PostgreSQL JDBC driver version 42.2.11, and there were some bugs related to transactions fixed in 42.2.12 (which I had updated in the Ansible playbooks, but not deployed yet)</li>
</ul>
</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2020-05/'>Read more →</a>
</article>
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2020-04/">April, 2020</a></h2>
<p class="blog-post-meta"><time datetime="2020-04-02T10:53:24+03:00">Thu Apr 02, 2020</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2020-04-02">2020-04-02</h2>
<ul>
<li>Maria asked me to update Charles Staver&rsquo;s ORCID iD in the submission template and on CGSpace, as his name was lower case before, and now he has corrected it
<ul>
<li>I updated the fifty-eight existing items on CGSpace</li>
</ul>
</li>
<li>Looking into the items Udana had asked about last week that were missing Altmetric donuts:
<ul>
<li><a href="https://hdl.handle.net/10568/103225">The first</a> is still missing its DOI, so I added it and <a href="https://twitter.com/mralanorth/status/1245632619661766657">tweeted its handle</a> (after a few hours there was a donut with score 222)</li>
<li><a href="https://hdl.handle.net/10568/106899">The second item</a> now has a donut with score 2 since I <a href="https://twitter.com/mralanorth/status/1243158045540134913">tweeted its handle</a> last week</li>
<li><a href="https://hdl.handle.net/10568/107258">The third item</a> now has a donut with score 1 since I <a href="https://twitter.com/mralanorth/status/1243158786392625153">tweeted it</a> last week</li>
</ul>
</li>
<li>On the same note, the <a href="https://hdl.handle.net/10568/106573">one item</a> Abenet pointed out last week now has a donut with score of 104 after I <a href="https://twitter.com/mralanorth/status/1243163710241345536">tweeted it</a> last week</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2020-04/'>Read more →</a>
</article>
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2020-03/">March, 2020</a></h2>
@ -340,60 +399,6 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2019-07/">July, 2019</a></h2>
<p class="blog-post-meta"><time datetime="2019-07-01T12:13:51+03:00">Mon Jul 01, 2019</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2019-07-01">2019-07-01</h2>
<ul>
<li>Create an &ldquo;AfricaRice books and book chapters&rdquo; collection on CGSpace for AfricaRice</li>
<li>Last month Sisay asked why the following &ldquo;most popular&rdquo; statistics link for a range of months in 2018 works for the CIAT community on DSpace Test, but not on CGSpace:
<ul>
<li><a href="https://dspacetest.cgiar.org/handle/10568/35697/most-popular/item#simplefilter=custom&amp;time_filter_end_date=01%2F12%2F2018">DSpace Test</a></li>
<li><a href="https://cgspace.cgiar.org/handle/10568/35697/most-popular/item#simplefilter=custom&amp;time_filter_end_date=01%2F12%2F2018">CGSpace</a></li>
</ul>
</li>
<li>Abenet had another similar issue a few days ago when trying to find the stats for 2018 in the RTB community</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2019-07/'>Read more →</a>
</article>
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2019-06/">June, 2019</a></h2>
<p class="blog-post-meta"><time datetime="2019-06-02T10:57:51+03:00">Sun Jun 02, 2019</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2019-06-02">2019-06-02</h2>
<ul>
<li>Merge the <a href="https://github.com/ilri/DSpace/pull/425">Solr filterCache</a> and <a href="https://github.com/ilri/DSpace/pull/426">XMLUI ISI journal</a> changes to the <code>5_x-prod</code> branch and deploy on CGSpace</li>
<li>Run system updates on CGSpace (linode18) and reboot it</li>
</ul>
<h2 id="2019-06-03">2019-06-03</h2>
<ul>
<li>Skype with Marie-Angélique and Abenet about <a href="https://agriculturalsemantics.github.io/cg-core/cgcore.html">CG Core v2</a></li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2019-06/'>Read more →</a>
</article>
<nav class="blog-pagination">
<a class="btn btn-outline-primary" href="/cgspace-notes/categories/notes/page/2/" rel="prev" role="button">Previous page</a>
@ -418,16 +423,16 @@
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
</ol>
</section>

120
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@ -10,7 +10,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/notes/" />
<meta property="og:updated_time" content="2021-10-04T11:10:54+03:00" />
<meta property="og:updated_time" content="2021-11-01T10:48:13+02:00" />
@ -81,6 +81,60 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2019-07/">July, 2019</a></h2>
<p class="blog-post-meta"><time datetime="2019-07-01T12:13:51+03:00">Mon Jul 01, 2019</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2019-07-01">2019-07-01</h2>
<ul>
<li>Create an &ldquo;AfricaRice books and book chapters&rdquo; collection on CGSpace for AfricaRice</li>
<li>Last month Sisay asked why the following &ldquo;most popular&rdquo; statistics link for a range of months in 2018 works for the CIAT community on DSpace Test, but not on CGSpace:
<ul>
<li><a href="https://dspacetest.cgiar.org/handle/10568/35697/most-popular/item#simplefilter=custom&amp;time_filter_end_date=01%2F12%2F2018">DSpace Test</a></li>
<li><a href="https://cgspace.cgiar.org/handle/10568/35697/most-popular/item#simplefilter=custom&amp;time_filter_end_date=01%2F12%2F2018">CGSpace</a></li>
</ul>
</li>
<li>Abenet had another similar issue a few days ago when trying to find the stats for 2018 in the RTB community</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2019-07/'>Read more →</a>
</article>
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2019-06/">June, 2019</a></h2>
<p class="blog-post-meta"><time datetime="2019-06-02T10:57:51+03:00">Sun Jun 02, 2019</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2019-06-02">2019-06-02</h2>
<ul>
<li>Merge the <a href="https://github.com/ilri/DSpace/pull/425">Solr filterCache</a> and <a href="https://github.com/ilri/DSpace/pull/426">XMLUI ISI journal</a> changes to the <code>5_x-prod</code> branch and deploy on CGSpace</li>
<li>Run system updates on CGSpace (linode18) and reboot it</li>
</ul>
<h2 id="2019-06-03">2019-06-03</h2>
<ul>
<li>Skype with Marie-Angélique and Abenet about <a href="https://agriculturalsemantics.github.io/cg-core/cgcore.html">CG Core v2</a></li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2019-06/'>Read more →</a>
</article>
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2019-05/">May, 2019</a></h2>
@ -341,62 +395,6 @@ sys 0m1.979s
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2018-09/">September, 2018</a></h2>
<p class="blog-post-meta"><time datetime="2018-09-02T09:55:54+03:00">Sun Sep 02, 2018</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2018-09-02">2018-09-02</h2>
<ul>
<li>New <a href="https://jdbc.postgresql.org/documentation/changelog.html#version_42.2.5">PostgreSQL JDBC driver version 42.2.5</a></li>
<li>I&rsquo;ll update the DSpace role in our <a href="https://github.com/ilri/rmg-ansible-public">Ansible infrastructure playbooks</a> and run the updated playbooks on CGSpace and DSpace Test</li>
<li>Also, I&rsquo;ll re-run the <code>postgresql</code> tasks because the custom PostgreSQL variables are dynamic according to the system&rsquo;s RAM, and we never re-ran them after migrating to larger Linodes last month</li>
<li>I&rsquo;m testing the new DSpace 5.8 branch in my Ubuntu 18.04 environment and I&rsquo;m getting those autowire errors in Tomcat 8.5.30 again:</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2018-09/'>Read more →</a>
</article>
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2018-08/">August, 2018</a></h2>
<p class="blog-post-meta"><time datetime="2018-08-01T11:52:54+03:00">Wed Aug 01, 2018</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2018-08-01">2018-08-01</h2>
<ul>
<li>DSpace Test had crashed at some point yesterday morning and I see the following in <code>dmesg</code>:</li>
</ul>
<pre tabindex="0"><code>[Tue Jul 31 00:00:41 2018] Out of memory: Kill process 1394 (java) score 668 or sacrifice child
[Tue Jul 31 00:00:41 2018] Killed process 1394 (java) total-vm:15601860kB, anon-rss:5355528kB, file-rss:0kB, shmem-rss:0kB
[Tue Jul 31 00:00:41 2018] oom_reaper: reaped process 1394 (java), now anon-rss:0kB, file-rss:0kB, shmem-rss:0kB
</code></pre><ul>
<li>Judging from the time of the crash it was probably related to the Discovery indexing that starts at midnight</li>
<li>From the DSpace log I see that eventually Solr stopped responding, so I guess the <code>java</code> process that was OOM killed above was Tomcat&rsquo;s</li>
<li>I&rsquo;m not sure why Tomcat didn&rsquo;t crash with an OutOfMemoryError&hellip;</li>
<li>Anyways, perhaps I should increase the JVM heap from 5120m to 6144m like we did a few months ago when we tried to run the whole CGSpace Solr core</li>
<li>The server only has 8GB of RAM so we&rsquo;ll eventually need to upgrade to a larger one because we&rsquo;ll start starving the OS, PostgreSQL, and command line batch processes</li>
<li>I ran all system updates on DSpace Test and rebooted it</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2018-08/'>Read more →</a>
</article>
<nav class="blog-pagination">
<a class="btn btn-outline-primary" href="/cgspace-notes/categories/notes/page/3/" rel="prev" role="button">Previous page</a>
@ -421,16 +419,16 @@ sys 0m1.979s
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
</ol>
</section>

125
docs/categories/notes/page/5/index.html
View File

@ -10,7 +10,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/notes/" />
<meta property="og:updated_time" content="2021-10-04T11:10:54+03:00" />
<meta property="og:updated_time" content="2021-11-01T10:48:13+02:00" />
@ -81,6 +81,62 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2018-09/">September, 2018</a></h2>
<p class="blog-post-meta"><time datetime="2018-09-02T09:55:54+03:00">Sun Sep 02, 2018</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2018-09-02">2018-09-02</h2>
<ul>
<li>New <a href="https://jdbc.postgresql.org/documentation/changelog.html#version_42.2.5">PostgreSQL JDBC driver version 42.2.5</a></li>
<li>I&rsquo;ll update the DSpace role in our <a href="https://github.com/ilri/rmg-ansible-public">Ansible infrastructure playbooks</a> and run the updated playbooks on CGSpace and DSpace Test</li>
<li>Also, I&rsquo;ll re-run the <code>postgresql</code> tasks because the custom PostgreSQL variables are dynamic according to the system&rsquo;s RAM, and we never re-ran them after migrating to larger Linodes last month</li>
<li>I&rsquo;m testing the new DSpace 5.8 branch in my Ubuntu 18.04 environment and I&rsquo;m getting those autowire errors in Tomcat 8.5.30 again:</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2018-09/'>Read more →</a>
</article>
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2018-08/">August, 2018</a></h2>
<p class="blog-post-meta"><time datetime="2018-08-01T11:52:54+03:00">Wed Aug 01, 2018</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2018-08-01">2018-08-01</h2>
<ul>
<li>DSpace Test had crashed at some point yesterday morning and I see the following in <code>dmesg</code>:</li>
</ul>
<pre tabindex="0"><code>[Tue Jul 31 00:00:41 2018] Out of memory: Kill process 1394 (java) score 668 or sacrifice child
[Tue Jul 31 00:00:41 2018] Killed process 1394 (java) total-vm:15601860kB, anon-rss:5355528kB, file-rss:0kB, shmem-rss:0kB
[Tue Jul 31 00:00:41 2018] oom_reaper: reaped process 1394 (java), now anon-rss:0kB, file-rss:0kB, shmem-rss:0kB
</code></pre><ul>
<li>Judging from the time of the crash it was probably related to the Discovery indexing that starts at midnight</li>
<li>From the DSpace log I see that eventually Solr stopped responding, so I guess the <code>java</code> process that was OOM killed above was Tomcat&rsquo;s</li>
<li>I&rsquo;m not sure why Tomcat didn&rsquo;t crash with an OutOfMemoryError&hellip;</li>
<li>Anyways, perhaps I should increase the JVM heap from 5120m to 6144m like we did a few months ago when we tried to run the whole CGSpace Solr core</li>
<li>The server only has 8GB of RAM so we&rsquo;ll eventually need to upgrade to a larger one because we&rsquo;ll start starving the OS, PostgreSQL, and command line batch processes</li>
<li>I ran all system updates on DSpace Test and rebooted it</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2018-08/'>Read more →</a>
</article>
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2018-07/">July, 2018</a></h2>
@ -348,65 +404,6 @@ dspace.log.2018-01-02:34
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2017-11/">November, 2017</a></h2>
<p class="blog-post-meta"><time datetime="2017-11-02T09:37:54+02:00">Thu Nov 02, 2017</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2017-11-01">2017-11-01</h2>
<ul>
<li>The CORE developers responded to say they are looking into their bot not respecting our robots.txt</li>
</ul>
<h2 id="2017-11-02">2017-11-02</h2>
<ul>
<li>Today there have been no hits by CORE and no alerts from Linode (coincidence?)</li>
</ul>
<pre tabindex="0"><code># grep -c &quot;CORE&quot; /var/log/nginx/access.log
0
</code></pre><ul>
<li>Generate list of authors on CGSpace for Peter to go through and correct:</li>
</ul>
<pre tabindex="0"><code>dspace=# \copy (select distinct text_value, count(*) as count from metadatavalue where metadata_field_id = (select metadata_field_id from metadatafieldregistry where element = 'contributor' and qualifier = 'author') AND resource_type_id = 2 group by text_value order by count desc) to /tmp/authors.csv with csv;
COPY 54701
</code></pre>
<a href='https://alanorth.github.io/cgspace-notes/2017-11/'>Read more →</a>
</article>
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2017-10/">October, 2017</a></h2>
<p class="blog-post-meta"><time datetime="2017-10-01T08:07:54+03:00">Sun Oct 01, 2017</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2017-10-01">2017-10-01</h2>
<ul>
<li>Peter emailed to point out that many items in the <a href="https://cgspace.cgiar.org/handle/10568/2703">ILRI archive collection</a> have multiple handles:</li>
</ul>
<pre tabindex="0"><code>http://hdl.handle.net/10568/78495||http://hdl.handle.net/10568/79336
</code></pre><ul>
<li>There appears to be a pattern but I&rsquo;ll have to look a bit closer and try to clean them up automatically, either in SQL or in OpenRefine</li>
<li>Add Katherine Lutz to the groups for content submission and edit steps of the CGIAR System collections</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2017-10/'>Read more →</a>
</article>
<nav class="blog-pagination">
<a class="btn btn-outline-primary" href="/cgspace-notes/categories/notes/page/4/" rel="prev" role="button">Previous page</a>
@ -431,16 +428,16 @@ COPY 54701
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
</ol>
</section>

69
docs/categories/notes/page/6/index.html
View File

@ -10,7 +10,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/notes/" />
<meta property="og:updated_time" content="2021-10-04T11:10:54+03:00" />
<meta property="og:updated_time" content="2021-11-01T10:48:13+02:00" />
@ -81,6 +81,65 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2017-11/">November, 2017</a></h2>
<p class="blog-post-meta"><time datetime="2017-11-02T09:37:54+02:00">Thu Nov 02, 2017</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2017-11-01">2017-11-01</h2>
<ul>
<li>The CORE developers responded to say they are looking into their bot not respecting our robots.txt</li>
</ul>
<h2 id="2017-11-02">2017-11-02</h2>
<ul>
<li>Today there have been no hits by CORE and no alerts from Linode (coincidence?)</li>
</ul>
<pre tabindex="0"><code># grep -c &quot;CORE&quot; /var/log/nginx/access.log
0
</code></pre><ul>
<li>Generate list of authors on CGSpace for Peter to go through and correct:</li>
</ul>
<pre tabindex="0"><code>dspace=# \copy (select distinct text_value, count(*) as count from metadatavalue where metadata_field_id = (select metadata_field_id from metadatafieldregistry where element = 'contributor' and qualifier = 'author') AND resource_type_id = 2 group by text_value order by count desc) to /tmp/authors.csv with csv;
COPY 54701
</code></pre>
<a href='https://alanorth.github.io/cgspace-notes/2017-11/'>Read more →</a>
</article>
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2017-10/">October, 2017</a></h2>
<p class="blog-post-meta"><time datetime="2017-10-01T08:07:54+03:00">Sun Oct 01, 2017</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2017-10-01">2017-10-01</h2>
<ul>
<li>Peter emailed to point out that many items in the <a href="https://cgspace.cgiar.org/handle/10568/2703">ILRI archive collection</a> have multiple handles:</li>
</ul>
<pre tabindex="0"><code>http://hdl.handle.net/10568/78495||http://hdl.handle.net/10568/79336
</code></pre><ul>
<li>There appears to be a pattern but I&rsquo;ll have to look a bit closer and try to clean them up automatically, either in SQL or in OpenRefine</li>
<li>Add Katherine Lutz to the groups for content submission and edit steps of the CGIAR System collections</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2017-10/'>Read more →</a>
</article>
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/cgiar-library-migration/">CGIAR Library Migration</a></h2>
@ -124,16 +183,16 @@
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
</ol>
</section>

8
docs/cgiar-library-migration/index.html
View File

@ -282,16 +282,16 @@ dspace=# select setval('handle_seq',86873);
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
</ol>
</section>

8
docs/cgspace-cgcorev2-migration/index.html
View File

@ -467,16 +467,16 @@
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
</ol>
</section>

8
docs/cgspace-dspace6-upgrade/index.html
View File

@ -471,16 +471,16 @@ $ chrt -b 0 dspace solr-upgrade-statistics-6x -n 2500000 -i statistics-2018
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
</ol>
</section>

135
docs/index.html
View File

@ -10,7 +10,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />
<meta property="og:updated_time" content="2021-10-28T18:08:13+03:00" />
<meta property="og:updated_time" content="2021-11-01T10:48:13+02:00" />
@ -31,7 +31,7 @@
"@type": "Person",
"name": "Alan Orth"
},
"dateModified": "2021-09-01T09:14:07+03:00",
"dateModified": "2021-11-01T11:14:07+03:00",
"keywords": "notes, migration, notes",
"description":"Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
}
@ -96,6 +96,56 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2021-11/">November, 2021</a></h2>
<p class="blog-post-meta"><time datetime="2021-11-01T11:14:07+03:00">Mon Nov 01, 2021</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2021-11-01">2021-11-01</h2>
<a href='https://alanorth.github.io/cgspace-notes/2021-11/'>Read more →</a>
</article>
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2021-10/">October, 2021</a></h2>
<p class="blog-post-meta"><time datetime="2021-10-01T11:14:07+03:00">Fri Oct 01, 2021</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2021-10-01">2021-10-01</h2>
<ul>
<li>Export all affiliations on CGSpace and run them against the latest RoR data dump:</li>
</ul>
<pre tabindex="0"><code class="language-console" data-lang="console">localhost/dspace63= &gt; \COPY (SELECT DISTINCT text_value as &quot;cg.contributor.affiliation&quot;, count(*) FROM metadatavalue WHERE dspace_object_id IN (SELECT uuid FROM item) AND metadata_field_id = 211 GROUP BY text_value ORDER BY count DESC) to /tmp/2021-10-01-affiliations.csv WITH CSV HEADER;
$ csvcut -c 1 /tmp/2021-10-01-affiliations.csv | sed 1d &gt; /tmp/2021-10-01-affiliations.txt
$ ./ilri/ror-lookup.py -i /tmp/2021-10-01-affiliations.txt -r 2021-09-23-ror-data.json -o /tmp/2021-10-01-affili
ations-matching.csv
$ csvgrep -c matched -m true /tmp/2021-10-01-affiliations-matching.csv | sed 1d | wc -l
1879
$ wc -l /tmp/2021-10-01-affiliations.txt
7100 /tmp/2021-10-01-affiliations.txt
</code></pre><ul>
<li>So we have 1879/7100 (26.46%) matching already</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2021-10/'>Read more →</a>
</article>
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2021-09/">September, 2021</a></h2>
@ -309,79 +359,6 @@ COPY 20994
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2021-02/">February, 2021</a></h2>
<p class="blog-post-meta"><time datetime="2021-02-01T10:13:54+02:00">Mon Feb 01, 2021</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2021-02-01">2021-02-01</h2>
<ul>
<li>Abenet said that CIP found more duplicate records in their export from AReS
<ul>
<li>I re-opened <a href="https://github.com/ilri/OpenRXV/issues/67">the issue</a> on OpenRXV where we had previously noticed this</li>
<li>The shared link where the duplicates are is here: <a href="https://cgspace.cgiar.org/explorer/shared/heEOz3YBnXdK69bR2ra6">https://cgspace.cgiar.org/explorer/shared/heEOz3YBnXdK69bR2ra6</a></li>
</ul>
</li>
<li>I had a call with CodeObia to discuss the work on OpenRXV</li>
<li>Check the results of the AReS harvesting from last night:</li>
</ul>
<pre tabindex="0"><code class="language-console" data-lang="console">$ curl -s 'http://localhost:9200/openrxv-items-temp/_count?q=*&amp;pretty'
{
&quot;count&quot; : 100875,
&quot;_shards&quot; : {
&quot;total&quot; : 1,
&quot;successful&quot; : 1,
&quot;skipped&quot; : 0,
&quot;failed&quot; : 0
}
}
</code></pre>
<a href='https://alanorth.github.io/cgspace-notes/2021-02/'>Read more →</a>
</article>
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2021-01/">January, 2021</a></h2>
<p class="blog-post-meta"><time datetime="2021-01-03T10:13:54+02:00">Sun Jan 03, 2021</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2021-01-03">2021-01-03</h2>
<ul>
<li>Peter notified me that some filters on AReS were broken again
<ul>
<li>It&rsquo;s the same issue with the field names getting <code>.keyword</code> appended to the end that I already <a href="https://github.com/ilri/OpenRXV/issues/66">filed an issue on OpenRXV about last month</a></li>
<li>I fixed the broken filters (careful to not edit any others, lest they break too!)</li>
</ul>
</li>
<li>Fix an issue with start page number for the DSpace REST API and statistics API in OpenRXV
<ul>
<li>The start page had been &ldquo;1&rdquo; in the UI, but in the backend they were doing some gymnastics to adjust to the zero-based offset/limit/page of the DSpace REST API and the statistics API</li>
<li>I adjusted it to default to 0 and added a note to the admin screen</li>
<li>I realized that this issue was actually causing the first page of 100 statistics to be missing&hellip;</li>
<li>For example, <a href="https://cgspace.cgiar.org/handle/10568/66839">this item</a> has 51 views on CGSpace, but 0 on AReS</li>
</ul>
</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2021-01/'>Read more →</a>
</article>
<nav class="blog-pagination">
@ -406,16 +383,16 @@ COPY 20994
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
</ol>
</section>

62
docs/index.xml
View File

@ -6,7 +6,39 @@
<description>Recent content on CGSpace Notes</description>
<generator>Hugo -- gohugo.io</generator>
<language>en-us</language>
<lastBuildDate>Wed, 01 Sep 2021 09:14:07 +0300</lastBuildDate><atom:link href="https://alanorth.github.io/cgspace-notes/index.xml" rel="self" type="application/rss+xml" />
<lastBuildDate>Mon, 01 Nov 2021 11:14:07 +0300</lastBuildDate><atom:link href="https://alanorth.github.io/cgspace-notes/index.xml" rel="self" type="application/rss+xml" />
<item>
<title>November, 2021</title>
<link>https://alanorth.github.io/cgspace-notes/2021-11/</link>
<pubDate>Mon, 01 Nov 2021 11:14:07 +0300</pubDate>
<guid>https://alanorth.github.io/cgspace-notes/2021-11/</guid>
<description>&lt;h2 id=&#34;2021-11-01&#34;&gt;2021-11-01&lt;/h2&gt;</description>
</item>
<item>
<title>October, 2021</title>
<link>https://alanorth.github.io/cgspace-notes/2021-10/</link>
<pubDate>Fri, 01 Oct 2021 11:14:07 +0300</pubDate>
<guid>https://alanorth.github.io/cgspace-notes/2021-10/</guid>
<description>&lt;h2 id=&#34;2021-10-01&#34;&gt;2021-10-01&lt;/h2&gt;
&lt;ul&gt;
&lt;li&gt;Export all affiliations on CGSpace and run them against the latest RoR data dump:&lt;/li&gt;
&lt;/ul&gt;
&lt;pre tabindex=&#34;0&#34;&gt;&lt;code class=&#34;language-console&#34; data-lang=&#34;console&#34;&gt;localhost/dspace63= &amp;gt; \COPY (SELECT DISTINCT text_value as &amp;quot;cg.contributor.affiliation&amp;quot;, count(*) FROM metadatavalue WHERE dspace_object_id IN (SELECT uuid FROM item) AND metadata_field_id = 211 GROUP BY text_value ORDER BY count DESC) to /tmp/2021-10-01-affiliations.csv WITH CSV HEADER;
$ csvcut -c 1 /tmp/2021-10-01-affiliations.csv | sed 1d &amp;gt; /tmp/2021-10-01-affiliations.txt
$ ./ilri/ror-lookup.py -i /tmp/2021-10-01-affiliations.txt -r 2021-09-23-ror-data.json -o /tmp/2021-10-01-affili
ations-matching.csv
$ csvgrep -c matched -m true /tmp/2021-10-01-affiliations-matching.csv | sed 1d | wc -l
1879
$ wc -l /tmp/2021-10-01-affiliations.txt
7100 /tmp/2021-10-01-affiliations.txt
&lt;/code&gt;&lt;/pre&gt;&lt;ul&gt;
&lt;li&gt;So we have 1879/7100 (26.46%) matching already&lt;/li&gt;
&lt;/ul&gt;</description>
</item>
<item>
<title>September, 2021</title>
<link>https://alanorth.github.io/cgspace-notes/2021-09/</link>
@ -1501,33 +1533,5 @@ dspacetest=# select text_value from metadatavalue where metadata_field_id=3 and
&lt;/code&gt;&lt;/pre&gt;</description>
</item>
<item>
<title></title>
<link>https://alanorth.github.io/cgspace-notes/1-01/</link>
<pubDate>Mon, 01 Jan 0001 00:00:00 +0000</pubDate>
<guid>https://alanorth.github.io/cgspace-notes/1-01/</guid>
<description>&lt;h2 id=&#34;categories-notes&#34;&gt;e&amp;ndash;
title: &amp;ldquo;October, 2021&amp;rdquo;
date: 2021-10-01T11:14:07+03:00
author: &amp;ldquo;Alan Orth&amp;rdquo;
categories: [&amp;ldquo;Notes&amp;rdquo;]&lt;/h2&gt;
&lt;h2 id=&#34;2021-10-01&#34;&gt;2021-10-01&lt;/h2&gt;
&lt;ul&gt;
&lt;li&gt;Export all affiliations on CGSpace and run them against the latest RoR data dump:&lt;/li&gt;
&lt;/ul&gt;
&lt;pre tabindex=&#34;0&#34;&gt;&lt;code class=&#34;language-console&#34; data-lang=&#34;console&#34;&gt;localhost/dspace63= &amp;gt; \COPY (SELECT DISTINCT text_value as &amp;quot;cg.contributor.affiliation&amp;quot;, count(*) FROM metadatavalue WHERE dspace_object_id IN (SELECT uuid FROM item) AND metadata_field_id = 211 GROUP BY text_value ORDER BY count DESC) to /tmp/2021-10-01-affiliations.csv WITH CSV HEADER;
$ csvcut -c 1 /tmp/2021-10-01-affiliations.csv | sed 1d &amp;gt; /tmp/2021-10-01-affiliations.txt
$ ./ilri/ror-lookup.py -i /tmp/2021-10-01-affiliations.txt -r 2021-09-23-ror-data.json -o /tmp/2021-10-01-affili
ations-matching.csv
$ csvgrep -c matched -m true /tmp/2021-10-01-affiliations-matching.csv | sed 1d | wc -l
1879
$ wc -l /tmp/2021-10-01-affiliations.txt
7100 /tmp/2021-10-01-affiliations.txt
&lt;/code&gt;&lt;/pre&gt;&lt;ul&gt;
&lt;li&gt;So we have 1879/7100 (26.46%) matching already&lt;/li&gt;
&lt;/ul&gt;</description>
</item>
</channel>
</rss>

144
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View File

@ -10,7 +10,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />
<meta property="og:updated_time" content="2021-10-28T18:08:13+03:00" />
<meta property="og:updated_time" content="2021-11-01T10:48:13+02:00" />
@ -31,7 +31,7 @@
"@type": "Person",
"name": "Alan Orth"
},
"dateModified": "2021-09-01T09:14:07+03:00",
"dateModified": "2021-11-01T11:14:07+03:00",
"keywords": "notes, migration, notes",
"description":"Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
}
@ -96,6 +96,79 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2021-02/">February, 2021</a></h2>
<p class="blog-post-meta"><time datetime="2021-02-01T10:13:54+02:00">Mon Feb 01, 2021</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2021-02-01">2021-02-01</h2>
<ul>
<li>Abenet said that CIP found more duplicate records in their export from AReS
<ul>
<li>I re-opened <a href="https://github.com/ilri/OpenRXV/issues/67">the issue</a> on OpenRXV where we had previously noticed this</li>
<li>The shared link where the duplicates are is here: <a href="https://cgspace.cgiar.org/explorer/shared/heEOz3YBnXdK69bR2ra6">https://cgspace.cgiar.org/explorer/shared/heEOz3YBnXdK69bR2ra6</a></li>
</ul>
</li>
<li>I had a call with CodeObia to discuss the work on OpenRXV</li>
<li>Check the results of the AReS harvesting from last night:</li>
</ul>
<pre tabindex="0"><code class="language-console" data-lang="console">$ curl -s 'http://localhost:9200/openrxv-items-temp/_count?q=*&amp;pretty'
{
&quot;count&quot; : 100875,
&quot;_shards&quot; : {
&quot;total&quot; : 1,
&quot;successful&quot; : 1,
&quot;skipped&quot; : 0,
&quot;failed&quot; : 0
}
}
</code></pre>
<a href='https://alanorth.github.io/cgspace-notes/2021-02/'>Read more →</a>
</article>
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2021-01/">January, 2021</a></h2>
<p class="blog-post-meta"><time datetime="2021-01-03T10:13:54+02:00">Sun Jan 03, 2021</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2021-01-03">2021-01-03</h2>
<ul>
<li>Peter notified me that some filters on AReS were broken again
<ul>
<li>It&rsquo;s the same issue with the field names getting <code>.keyword</code> appended to the end that I already <a href="https://github.com/ilri/OpenRXV/issues/66">filed an issue on OpenRXV about last month</a></li>
<li>I fixed the broken filters (careful to not edit any others, lest they break too!)</li>
</ul>
</li>
<li>Fix an issue with start page number for the DSpace REST API and statistics API in OpenRXV
<ul>
<li>The start page had been &ldquo;1&rdquo; in the UI, but in the backend they were doing some gymnastics to adjust to the zero-based offset/limit/page of the DSpace REST API and the statistics API</li>
<li>I adjusted it to default to 0 and added a note to the admin screen</li>
<li>I realized that this issue was actually causing the first page of 100 statistics to be missing&hellip;</li>
<li>For example, <a href="https://cgspace.cgiar.org/handle/10568/66839">this item</a> has 51 views on CGSpace, but 0 on AReS</li>
</ul>
</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2021-01/'>Read more →</a>
</article>
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2020-12/">December, 2020</a></h2>
@ -313,65 +386,6 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2020-05/">May, 2020</a></h2>
<p class="blog-post-meta"><time datetime="2020-05-02T09:52:04+03:00">Sat May 02, 2020</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2020-05-02">2020-05-02</h2>
<ul>
<li>Peter said that CTA is having problems submitting an item to CGSpace
<ul>
<li>Looking at the PostgreSQL stats it seems to be the same issue that Tezira was having last week, as I see the number of connections in &lsquo;idle in transaction&rsquo; and &lsquo;waiting for lock&rsquo; state are increasing again</li>
<li>I see that CGSpace (linode18) is still using PostgreSQL JDBC driver version 42.2.11, and there were some bugs related to transactions fixed in 42.2.12 (which I had updated in the Ansible playbooks, but not deployed yet)</li>
</ul>
</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2020-05/'>Read more →</a>
</article>
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2020-04/">April, 2020</a></h2>
<p class="blog-post-meta"><time datetime="2020-04-02T10:53:24+03:00">Thu Apr 02, 2020</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2020-04-02">2020-04-02</h2>
<ul>
<li>Maria asked me to update Charles Staver&rsquo;s ORCID iD in the submission template and on CGSpace, as his name was lower case before, and now he has corrected it
<ul>
<li>I updated the fifty-eight existing items on CGSpace</li>
</ul>
</li>
<li>Looking into the items Udana had asked about last week that were missing Altmetric donuts:
<ul>
<li><a href="https://hdl.handle.net/10568/103225">The first</a> is still missing its DOI, so I added it and <a href="https://twitter.com/mralanorth/status/1245632619661766657">tweeted its handle</a> (after a few hours there was a donut with score 222)</li>
<li><a href="https://hdl.handle.net/10568/106899">The second item</a> now has a donut with score 2 since I <a href="https://twitter.com/mralanorth/status/1243158045540134913">tweeted its handle</a> last week</li>
<li><a href="https://hdl.handle.net/10568/107258">The third item</a> now has a donut with score 1 since I <a href="https://twitter.com/mralanorth/status/1243158786392625153">tweeted it</a> last week</li>
</ul>
</li>
<li>On the same note, the <a href="https://hdl.handle.net/10568/106573">one item</a> Abenet pointed out last week now has a donut with score of 104 after I <a href="https://twitter.com/mralanorth/status/1243163710241345536">tweeted it</a> last week</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2020-04/'>Read more →</a>
</article>
<nav class="blog-pagination">
<a class="btn btn-outline-primary" href="/cgspace-notes/" rel="prev" role="button">Previous page</a>
@ -396,16 +410,16 @@
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
</ol>
</section>

125
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View File

@ -10,7 +10,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />
<meta property="og:updated_time" content="2021-10-28T18:08:13+03:00" />
<meta property="og:updated_time" content="2021-11-01T10:48:13+02:00" />
@ -31,7 +31,7 @@
"@type": "Person",
"name": "Alan Orth"
},
"dateModified": "2021-09-01T09:14:07+03:00",
"dateModified": "2021-11-01T11:14:07+03:00",
"keywords": "notes, migration, notes",
"description":"Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
}
@ -96,6 +96,65 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2020-05/">May, 2020</a></h2>
<p class="blog-post-meta"><time datetime="2020-05-02T09:52:04+03:00">Sat May 02, 2020</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2020-05-02">2020-05-02</h2>
<ul>
<li>Peter said that CTA is having problems submitting an item to CGSpace
<ul>
<li>Looking at the PostgreSQL stats it seems to be the same issue that Tezira was having last week, as I see the number of connections in &lsquo;idle in transaction&rsquo; and &lsquo;waiting for lock&rsquo; state are increasing again</li>
<li>I see that CGSpace (linode18) is still using PostgreSQL JDBC driver version 42.2.11, and there were some bugs related to transactions fixed in 42.2.12 (which I had updated in the Ansible playbooks, but not deployed yet)</li>
</ul>
</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2020-05/'>Read more →</a>
</article>
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2020-04/">April, 2020</a></h2>
<p class="blog-post-meta"><time datetime="2020-04-02T10:53:24+03:00">Thu Apr 02, 2020</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2020-04-02">2020-04-02</h2>
<ul>
<li>Maria asked me to update Charles Staver&rsquo;s ORCID iD in the submission template and on CGSpace, as his name was lower case before, and now he has corrected it
<ul>
<li>I updated the fifty-eight existing items on CGSpace</li>
</ul>
</li>
<li>Looking into the items Udana had asked about last week that were missing Altmetric donuts:
<ul>
<li><a href="https://hdl.handle.net/10568/103225">The first</a> is still missing its DOI, so I added it and <a href="https://twitter.com/mralanorth/status/1245632619661766657">tweeted its handle</a> (after a few hours there was a donut with score 222)</li>
<li><a href="https://hdl.handle.net/10568/106899">The second item</a> now has a donut with score 2 since I <a href="https://twitter.com/mralanorth/status/1243158045540134913">tweeted its handle</a> last week</li>
<li><a href="https://hdl.handle.net/10568/107258">The third item</a> now has a donut with score 1 since I <a href="https://twitter.com/mralanorth/status/1243158786392625153">tweeted it</a> last week</li>
</ul>
</li>
<li>On the same note, the <a href="https://hdl.handle.net/10568/106573">one item</a> Abenet pointed out last week now has a donut with score of 104 after I <a href="https://twitter.com/mralanorth/status/1243163710241345536">tweeted it</a> last week</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2020-04/'>Read more →</a>
</article>
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2020-03/">March, 2020</a></h2>
@ -355,60 +414,6 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2019-07/">July, 2019</a></h2>
<p class="blog-post-meta"><time datetime="2019-07-01T12:13:51+03:00">Mon Jul 01, 2019</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2019-07-01">2019-07-01</h2>
<ul>
<li>Create an &ldquo;AfricaRice books and book chapters&rdquo; collection on CGSpace for AfricaRice</li>
<li>Last month Sisay asked why the following &ldquo;most popular&rdquo; statistics link for a range of months in 2018 works for the CIAT community on DSpace Test, but not on CGSpace:
<ul>
<li><a href="https://dspacetest.cgiar.org/handle/10568/35697/most-popular/item#simplefilter=custom&amp;time_filter_end_date=01%2F12%2F2018">DSpace Test</a></li>
<li><a href="https://cgspace.cgiar.org/handle/10568/35697/most-popular/item#simplefilter=custom&amp;time_filter_end_date=01%2F12%2F2018">CGSpace</a></li>
</ul>
</li>
<li>Abenet had another similar issue a few days ago when trying to find the stats for 2018 in the RTB community</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2019-07/'>Read more →</a>
</article>
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2019-06/">June, 2019</a></h2>
<p class="blog-post-meta"><time datetime="2019-06-02T10:57:51+03:00">Sun Jun 02, 2019</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2019-06-02">2019-06-02</h2>
<ul>
<li>Merge the <a href="https://github.com/ilri/DSpace/pull/425">Solr filterCache</a> and <a href="https://github.com/ilri/DSpace/pull/426">XMLUI ISI journal</a> changes to the <code>5_x-prod</code> branch and deploy on CGSpace</li>
<li>Run system updates on CGSpace (linode18) and reboot it</li>
</ul>
<h2 id="2019-06-03">2019-06-03</h2>
<ul>
<li>Skype with Marie-Angélique and Abenet about <a href="https://agriculturalsemantics.github.io/cg-core/cgcore.html">CG Core v2</a></li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2019-06/'>Read more →</a>
</article>
<nav class="blog-pagination">
<a class="btn btn-outline-primary" href="/cgspace-notes/page/2/" rel="prev" role="button">Previous page</a>
@ -433,16 +438,16 @@
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
</ol>
</section>

122
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View File

@ -10,7 +10,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />
<meta property="og:updated_time" content="2021-10-28T18:08:13+03:00" />
<meta property="og:updated_time" content="2021-11-01T10:48:13+02:00" />
@ -31,7 +31,7 @@
"@type": "Person",
"name": "Alan Orth"
},
"dateModified": "2021-09-01T09:14:07+03:00",
"dateModified": "2021-11-01T11:14:07+03:00",
"keywords": "notes, migration, notes",
"description":"Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
}
@ -96,6 +96,60 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2019-07/">July, 2019</a></h2>
<p class="blog-post-meta"><time datetime="2019-07-01T12:13:51+03:00">Mon Jul 01, 2019</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2019-07-01">2019-07-01</h2>
<ul>
<li>Create an &ldquo;AfricaRice books and book chapters&rdquo; collection on CGSpace for AfricaRice</li>
<li>Last month Sisay asked why the following &ldquo;most popular&rdquo; statistics link for a range of months in 2018 works for the CIAT community on DSpace Test, but not on CGSpace:
<ul>
<li><a href="https://dspacetest.cgiar.org/handle/10568/35697/most-popular/item#simplefilter=custom&amp;time_filter_end_date=01%2F12%2F2018">DSpace Test</a></li>
<li><a href="https://cgspace.cgiar.org/handle/10568/35697/most-popular/item#simplefilter=custom&amp;time_filter_end_date=01%2F12%2F2018">CGSpace</a></li>
</ul>
</li>
<li>Abenet had another similar issue a few days ago when trying to find the stats for 2018 in the RTB community</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2019-07/'>Read more →</a>
</article>
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2019-06/">June, 2019</a></h2>
<p class="blog-post-meta"><time datetime="2019-06-02T10:57:51+03:00">Sun Jun 02, 2019</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2019-06-02">2019-06-02</h2>
<ul>
<li>Merge the <a href="https://github.com/ilri/DSpace/pull/425">Solr filterCache</a> and <a href="https://github.com/ilri/DSpace/pull/426">XMLUI ISI journal</a> changes to the <code>5_x-prod</code> branch and deploy on CGSpace</li>
<li>Run system updates on CGSpace (linode18) and reboot it</li>
</ul>
<h2 id="2019-06-03">2019-06-03</h2>
<ul>
<li>Skype with Marie-Angélique and Abenet about <a href="https://agriculturalsemantics.github.io/cg-core/cgcore.html">CG Core v2</a></li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2019-06/'>Read more →</a>
</article>
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2019-05/">May, 2019</a></h2>
@ -356,62 +410,6 @@ sys 0m1.979s
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2018-09/">September, 2018</a></h2>
<p class="blog-post-meta"><time datetime="2018-09-02T09:55:54+03:00">Sun Sep 02, 2018</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2018-09-02">2018-09-02</h2>
<ul>
<li>New <a href="https://jdbc.postgresql.org/documentation/changelog.html#version_42.2.5">PostgreSQL JDBC driver version 42.2.5</a></li>
<li>I&rsquo;ll update the DSpace role in our <a href="https://github.com/ilri/rmg-ansible-public">Ansible infrastructure playbooks</a> and run the updated playbooks on CGSpace and DSpace Test</li>
<li>Also, I&rsquo;ll re-run the <code>postgresql</code> tasks because the custom PostgreSQL variables are dynamic according to the system&rsquo;s RAM, and we never re-ran them after migrating to larger Linodes last month</li>
<li>I&rsquo;m testing the new DSpace 5.8 branch in my Ubuntu 18.04 environment and I&rsquo;m getting those autowire errors in Tomcat 8.5.30 again:</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2018-09/'>Read more →</a>
</article>
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2018-08/">August, 2018</a></h2>
<p class="blog-post-meta"><time datetime="2018-08-01T11:52:54+03:00">Wed Aug 01, 2018</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2018-08-01">2018-08-01</h2>
<ul>
<li>DSpace Test had crashed at some point yesterday morning and I see the following in <code>dmesg</code>:</li>
</ul>
<pre tabindex="0"><code>[Tue Jul 31 00:00:41 2018] Out of memory: Kill process 1394 (java) score 668 or sacrifice child
[Tue Jul 31 00:00:41 2018] Killed process 1394 (java) total-vm:15601860kB, anon-rss:5355528kB, file-rss:0kB, shmem-rss:0kB
[Tue Jul 31 00:00:41 2018] oom_reaper: reaped process 1394 (java), now anon-rss:0kB, file-rss:0kB, shmem-rss:0kB
</code></pre><ul>
<li>Judging from the time of the crash it was probably related to the Discovery indexing that starts at midnight</li>
<li>From the DSpace log I see that eventually Solr stopped responding, so I guess the <code>java</code> process that was OOM killed above was Tomcat&rsquo;s</li>
<li>I&rsquo;m not sure why Tomcat didn&rsquo;t crash with an OutOfMemoryError&hellip;</li>
<li>Anyways, perhaps I should increase the JVM heap from 5120m to 6144m like we did a few months ago when we tried to run the whole CGSpace Solr core</li>
<li>The server only has 8GB of RAM so we&rsquo;ll eventually need to upgrade to a larger one because we&rsquo;ll start starving the OS, PostgreSQL, and command line batch processes</li>
<li>I ran all system updates on DSpace Test and rebooted it</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2018-08/'>Read more →</a>
</article>
<nav class="blog-pagination">
<a class="btn btn-outline-primary" href="/cgspace-notes/page/3/" rel="prev" role="button">Previous page</a>
@ -436,16 +434,16 @@ sys 0m1.979s
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
</ol>
</section>

127
docs/page/5/index.html
View File

@ -10,7 +10,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />
<meta property="og:updated_time" content="2021-10-28T18:08:13+03:00" />
<meta property="og:updated_time" content="2021-11-01T10:48:13+02:00" />
@ -31,7 +31,7 @@
"@type": "Person",
"name": "Alan Orth"
},
"dateModified": "2021-09-01T09:14:07+03:00",
"dateModified": "2021-11-01T11:14:07+03:00",
"keywords": "notes, migration, notes",
"description":"Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
}
@ -96,6 +96,62 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2018-09/">September, 2018</a></h2>
<p class="blog-post-meta"><time datetime="2018-09-02T09:55:54+03:00">Sun Sep 02, 2018</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2018-09-02">2018-09-02</h2>
<ul>
<li>New <a href="https://jdbc.postgresql.org/documentation/changelog.html#version_42.2.5">PostgreSQL JDBC driver version 42.2.5</a></li>
<li>I&rsquo;ll update the DSpace role in our <a href="https://github.com/ilri/rmg-ansible-public">Ansible infrastructure playbooks</a> and run the updated playbooks on CGSpace and DSpace Test</li>
<li>Also, I&rsquo;ll re-run the <code>postgresql</code> tasks because the custom PostgreSQL variables are dynamic according to the system&rsquo;s RAM, and we never re-ran them after migrating to larger Linodes last month</li>
<li>I&rsquo;m testing the new DSpace 5.8 branch in my Ubuntu 18.04 environment and I&rsquo;m getting those autowire errors in Tomcat 8.5.30 again:</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2018-09/'>Read more →</a>
</article>
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2018-08/">August, 2018</a></h2>
<p class="blog-post-meta"><time datetime="2018-08-01T11:52:54+03:00">Wed Aug 01, 2018</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2018-08-01">2018-08-01</h2>
<ul>
<li>DSpace Test had crashed at some point yesterday morning and I see the following in <code>dmesg</code>:</li>
</ul>
<pre tabindex="0"><code>[Tue Jul 31 00:00:41 2018] Out of memory: Kill process 1394 (java) score 668 or sacrifice child
[Tue Jul 31 00:00:41 2018] Killed process 1394 (java) total-vm:15601860kB, anon-rss:5355528kB, file-rss:0kB, shmem-rss:0kB
[Tue Jul 31 00:00:41 2018] oom_reaper: reaped process 1394 (java), now anon-rss:0kB, file-rss:0kB, shmem-rss:0kB
</code></pre><ul>
<li>Judging from the time of the crash it was probably related to the Discovery indexing that starts at midnight</li>
<li>From the DSpace log I see that eventually Solr stopped responding, so I guess the <code>java</code> process that was OOM killed above was Tomcat&rsquo;s</li>
<li>I&rsquo;m not sure why Tomcat didn&rsquo;t crash with an OutOfMemoryError&hellip;</li>
<li>Anyways, perhaps I should increase the JVM heap from 5120m to 6144m like we did a few months ago when we tried to run the whole CGSpace Solr core</li>
<li>The server only has 8GB of RAM so we&rsquo;ll eventually need to upgrade to a larger one because we&rsquo;ll start starving the OS, PostgreSQL, and command line batch processes</li>
<li>I ran all system updates on DSpace Test and rebooted it</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2018-08/'>Read more →</a>
</article>
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2018-07/">July, 2018</a></h2>
@ -363,65 +419,6 @@ dspace.log.2018-01-02:34
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2017-11/">November, 2017</a></h2>
<p class="blog-post-meta"><time datetime="2017-11-02T09:37:54+02:00">Thu Nov 02, 2017</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2017-11-01">2017-11-01</h2>
<ul>
<li>The CORE developers responded to say they are looking into their bot not respecting our robots.txt</li>
</ul>
<h2 id="2017-11-02">2017-11-02</h2>
<ul>
<li>Today there have been no hits by CORE and no alerts from Linode (coincidence?)</li>
</ul>
<pre tabindex="0"><code># grep -c &quot;CORE&quot; /var/log/nginx/access.log
0
</code></pre><ul>
<li>Generate list of authors on CGSpace for Peter to go through and correct:</li>
</ul>
<pre tabindex="0"><code>dspace=# \copy (select distinct text_value, count(*) as count from metadatavalue where metadata_field_id = (select metadata_field_id from metadatafieldregistry where element = 'contributor' and qualifier = 'author') AND resource_type_id = 2 group by text_value order by count desc) to /tmp/authors.csv with csv;
COPY 54701
</code></pre>
<a href='https://alanorth.github.io/cgspace-notes/2017-11/'>Read more →</a>
</article>
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2017-10/">October, 2017</a></h2>
<p class="blog-post-meta"><time datetime="2017-10-01T08:07:54+03:00">Sun Oct 01, 2017</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2017-10-01">2017-10-01</h2>
<ul>
<li>Peter emailed to point out that many items in the <a href="https://cgspace.cgiar.org/handle/10568/2703">ILRI archive collection</a> have multiple handles:</li>
</ul>
<pre tabindex="0"><code>http://hdl.handle.net/10568/78495||http://hdl.handle.net/10568/79336
</code></pre><ul>
<li>There appears to be a pattern but I&rsquo;ll have to look a bit closer and try to clean them up automatically, either in SQL or in OpenRefine</li>
<li>Add Katherine Lutz to the groups for content submission and edit steps of the CGIAR System collections</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2017-10/'>Read more →</a>
</article>
<nav class="blog-pagination">
<a class="btn btn-outline-primary" href="/cgspace-notes/page/4/" rel="prev" role="button">Previous page</a>
@ -446,16 +443,16 @@ COPY 54701
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
</ol>
</section>

128
docs/page/6/index.html
View File

@ -10,7 +10,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />
<meta property="og:updated_time" content="2021-10-28T18:08:13+03:00" />
<meta property="og:updated_time" content="2021-11-01T10:48:13+02:00" />
@ -31,7 +31,7 @@
"@type": "Person",
"name": "Alan Orth"
},
"dateModified": "2021-09-01T09:14:07+03:00",
"dateModified": "2021-11-01T11:14:07+03:00",
"keywords": "notes, migration, notes",
"description":"Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
}
@ -96,6 +96,65 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2017-11/">November, 2017</a></h2>
<p class="blog-post-meta"><time datetime="2017-11-02T09:37:54+02:00">Thu Nov 02, 2017</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2017-11-01">2017-11-01</h2>
<ul>
<li>The CORE developers responded to say they are looking into their bot not respecting our robots.txt</li>
</ul>
<h2 id="2017-11-02">2017-11-02</h2>
<ul>
<li>Today there have been no hits by CORE and no alerts from Linode (coincidence?)</li>
</ul>
<pre tabindex="0"><code># grep -c &quot;CORE&quot; /var/log/nginx/access.log
0
</code></pre><ul>
<li>Generate list of authors on CGSpace for Peter to go through and correct:</li>
</ul>
<pre tabindex="0"><code>dspace=# \copy (select distinct text_value, count(*) as count from metadatavalue where metadata_field_id = (select metadata_field_id from metadatafieldregistry where element = 'contributor' and qualifier = 'author') AND resource_type_id = 2 group by text_value order by count desc) to /tmp/authors.csv with csv;
COPY 54701
</code></pre>
<a href='https://alanorth.github.io/cgspace-notes/2017-11/'>Read more →</a>
</article>
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2017-10/">October, 2017</a></h2>
<p class="blog-post-meta"><time datetime="2017-10-01T08:07:54+03:00">Sun Oct 01, 2017</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2017-10-01">2017-10-01</h2>
<ul>
<li>Peter emailed to point out that many items in the <a href="https://cgspace.cgiar.org/handle/10568/2703">ILRI archive collection</a> have multiple handles:</li>
</ul>
<pre tabindex="0"><code>http://hdl.handle.net/10568/78495||http://hdl.handle.net/10568/79336
</code></pre><ul>
<li>There appears to be a pattern but I&rsquo;ll have to look a bit closer and try to clean them up automatically, either in SQL or in OpenRefine</li>
<li>Add Katherine Lutz to the groups for content submission and edit steps of the CGIAR System collections</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2017-10/'>Read more →</a>
</article>
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/cgiar-library-migration/">CGIAR Library Migration</a></h2>
@ -307,63 +366,6 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2017-02/">February, 2017</a></h2>
<p class="blog-post-meta"><time datetime="2017-02-07T07:04:52-08:00">Tue Feb 07, 2017</time> by Alan Orth in
<span class="fas fa-tag" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/tags/notes/" rel="tag">Notes</a>
</p>
</header>
<h2 id="2017-02-07">2017-02-07</h2>
<ul>
<li>An item was mapped twice erroneously again, so I had to remove one of the mappings manually:</li>
</ul>
<pre tabindex="0"><code>dspace=# select * from collection2item where item_id = '80278';
id | collection_id | item_id
-------+---------------+---------
92551 | 313 | 80278
92550 | 313 | 80278
90774 | 1051 | 80278
(3 rows)
dspace=# delete from collection2item where id = 92551 and item_id = 80278;
DELETE 1
</code></pre><ul>
<li>Create issue on GitHub to track the addition of CCAFS Phase II project tags (<a href="https://github.com/ilri/DSpace/issues/301">#301</a>)</li>
<li>Looks like we&rsquo;ll be using <code>cg.identifier.ccafsprojectpii</code> as the field name</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2017-02/'>Read more →</a>
</article>
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2017-01/">January, 2017</a></h2>
<p class="blog-post-meta"><time datetime="2017-01-02T10:43:00+03:00">Mon Jan 02, 2017</time> by Alan Orth in
<span class="fas fa-tag" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/tags/notes/" rel="tag">Notes</a>
</p>
</header>
<h2 id="2017-01-02">2017-01-02</h2>
<ul>
<li>I checked to see if the Solr sharding task that is supposed to run on January 1st had run and saw there was an error</li>
<li>I tested on DSpace Test as well and it doesn&rsquo;t work there either</li>
<li>I asked on the dspace-tech mailing list because it seems to be broken, and actually now I&rsquo;m not sure if we&rsquo;ve ever had the sharding task run successfully over all these years</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2017-01/'>Read more →</a>
</article>
<nav class="blog-pagination">
<a class="btn btn-outline-primary" href="/cgspace-notes/page/5/" rel="prev" role="button">Previous page</a>
@ -388,16 +390,16 @@ DELETE 1
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
</ol>
</section>

117
docs/page/7/index.html
View File

@ -10,7 +10,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />
<meta property="og:updated_time" content="2021-10-28T18:08:13+03:00" />
<meta property="og:updated_time" content="2021-11-01T10:48:13+02:00" />
@ -31,7 +31,7 @@
"@type": "Person",
"name": "Alan Orth"
},
"dateModified": "2021-09-01T09:14:07+03:00",
"dateModified": "2021-11-01T11:14:07+03:00",
"keywords": "notes, migration, notes",
"description":"Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
}
@ -96,6 +96,63 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2017-02/">February, 2017</a></h2>
<p class="blog-post-meta"><time datetime="2017-02-07T07:04:52-08:00">Tue Feb 07, 2017</time> by Alan Orth in
<span class="fas fa-tag" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/tags/notes/" rel="tag">Notes</a>
</p>
</header>
<h2 id="2017-02-07">2017-02-07</h2>
<ul>
<li>An item was mapped twice erroneously again, so I had to remove one of the mappings manually:</li>
</ul>
<pre tabindex="0"><code>dspace=# select * from collection2item where item_id = '80278';
id | collection_id | item_id
-------+---------------+---------
92551 | 313 | 80278
92550 | 313 | 80278
90774 | 1051 | 80278
(3 rows)
dspace=# delete from collection2item where id = 92551 and item_id = 80278;
DELETE 1
</code></pre><ul>
<li>Create issue on GitHub to track the addition of CCAFS Phase II project tags (<a href="https://github.com/ilri/DSpace/issues/301">#301</a>)</li>
<li>Looks like we&rsquo;ll be using <code>cg.identifier.ccafsprojectpii</code> as the field name</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2017-02/'>Read more →</a>
</article>
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2017-01/">January, 2017</a></h2>
<p class="blog-post-meta"><time datetime="2017-01-02T10:43:00+03:00">Mon Jan 02, 2017</time> by Alan Orth in
<span class="fas fa-tag" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/tags/notes/" rel="tag">Notes</a>
</p>
</header>
<h2 id="2017-01-02">2017-01-02</h2>
<ul>
<li>I checked to see if the Solr sharding task that is supposed to run on January 1st had run and saw there was an error</li>
<li>I tested on DSpace Test as well and it doesn&rsquo;t work there either</li>
<li>I asked on the dspace-tech mailing list because it seems to be broken, and actually now I&rsquo;m not sure if we&rsquo;ve ever had the sharding task run successfully over all these years</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2017-01/'>Read more →</a>
</article>
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2016-12/">December, 2016</a></h2>
@ -318,54 +375,6 @@ dspacetest=# select text_value from metadatavalue where metadata_field_id=3 and
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2016-04/">April, 2016</a></h2>
<p class="blog-post-meta"><time datetime="2016-04-04T11:06:00+03:00">Mon Apr 04, 2016</time> by Alan Orth in
<span class="fas fa-tag" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/tags/notes/" rel="tag">Notes</a>
</p>
</header>
<h2 id="2016-04-04">2016-04-04</h2>
<ul>
<li>Looking at log file use on CGSpace and notice that we need to work on our cron setup a bit</li>
<li>We are backing up all logs in the log folder, including useless stuff like solr, cocoon, handle-plugin, etc</li>
<li>After running DSpace for over five years I&rsquo;ve never needed to look in any other log file than dspace.log, leave alone one from last year!</li>
<li>This will save us a few gigs of backup space we&rsquo;re paying for on S3</li>
<li>Also, I noticed the <code>checker</code> log has some errors we should pay attention to:</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2016-04/'>Read more →</a>
</article>
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2016-03/">March, 2016</a></h2>
<p class="blog-post-meta"><time datetime="2016-03-02T16:50:00+03:00">Wed Mar 02, 2016</time> by Alan Orth in
<span class="fas fa-tag" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/tags/notes/" rel="tag">Notes</a>
</p>
</header>
<h2 id="2016-03-02">2016-03-02</h2>
<ul>
<li>Looking at issues with author authorities on CGSpace</li>
<li>For some reason we still have the <code>index-lucene-update</code> cron job active on CGSpace, but I&rsquo;m pretty sure we don&rsquo;t need it as of the latest few versions of Atmire&rsquo;s Listings and Reports module</li>
<li>Reinstall my local (Mac OS X) DSpace stack with Tomcat 7, PostgreSQL 9.3, and Java JDK 1.7 to match environment on CGSpace server</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2016-03/'>Read more →</a>
</article>
<nav class="blog-pagination">
<a class="btn btn-outline-primary" href="/cgspace-notes/page/6/" rel="prev" role="button">Previous page</a>
@ -390,16 +399,16 @@ dspacetest=# select text_value from metadatavalue where metadata_field_id=3 and
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
</ol>
</section>

93
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View File

@ -10,7 +10,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />
<meta property="og:updated_time" content="2021-10-28T18:08:13+03:00" />
<meta property="og:updated_time" content="2021-11-01T10:48:13+02:00" />
@ -31,7 +31,7 @@
"@type": "Person",
"name": "Alan Orth"
},
"dateModified": "2021-09-01T09:14:07+03:00",
"dateModified": "2021-11-01T11:14:07+03:00",
"keywords": "notes, migration, notes",
"description":"Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
}
@ -96,6 +96,54 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2016-04/">April, 2016</a></h2>
<p class="blog-post-meta"><time datetime="2016-04-04T11:06:00+03:00">Mon Apr 04, 2016</time> by Alan Orth in
<span class="fas fa-tag" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/tags/notes/" rel="tag">Notes</a>
</p>
</header>
<h2 id="2016-04-04">2016-04-04</h2>
<ul>
<li>Looking at log file use on CGSpace and notice that we need to work on our cron setup a bit</li>
<li>We are backing up all logs in the log folder, including useless stuff like solr, cocoon, handle-plugin, etc</li>
<li>After running DSpace for over five years I&rsquo;ve never needed to look in any other log file than dspace.log, leave alone one from last year!</li>
<li>This will save us a few gigs of backup space we&rsquo;re paying for on S3</li>
<li>Also, I noticed the <code>checker</code> log has some errors we should pay attention to:</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2016-04/'>Read more →</a>
</article>
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2016-03/">March, 2016</a></h2>
<p class="blog-post-meta"><time datetime="2016-03-02T16:50:00+03:00">Wed Mar 02, 2016</time> by Alan Orth in
<span class="fas fa-tag" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/tags/notes/" rel="tag">Notes</a>
</p>
</header>
<h2 id="2016-03-02">2016-03-02</h2>
<ul>
<li>Looking at issues with author authorities on CGSpace</li>
<li>For some reason we still have the <code>index-lucene-update</code> cron job active on CGSpace, but I&rsquo;m pretty sure we don&rsquo;t need it as of the latest few versions of Atmire&rsquo;s Listings and Reports module</li>
<li>Reinstall my local (Mac OS X) DSpace stack with Tomcat 7, PostgreSQL 9.3, and Java JDK 1.7 to match environment on CGSpace server</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2016-03/'>Read more →</a>
</article>
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2016-02/">February, 2016</a></h2>
@ -199,39 +247,6 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/1-01/"></a></h2>
<p class="blog-post-meta"><time datetime="0001-01-01T00:00:00Z">Mon Jan 01, 0001</time> by Alan Orth</p>
</header>
<h2 id="categories-notes">e&ndash;
title: &ldquo;October, 2021&rdquo;
date: 2021-10-01T11:14:07+03:00
author: &ldquo;Alan Orth&rdquo;
categories: [&ldquo;Notes&rdquo;]</h2>
<h2 id="2021-10-01">2021-10-01</h2>
<ul>
<li>Export all affiliations on CGSpace and run them against the latest RoR data dump:</li>
</ul>
<pre tabindex="0"><code class="language-console" data-lang="console">localhost/dspace63= &gt; \COPY (SELECT DISTINCT text_value as &quot;cg.contributor.affiliation&quot;, count(*) FROM metadatavalue WHERE dspace_object_id IN (SELECT uuid FROM item) AND metadata_field_id = 211 GROUP BY text_value ORDER BY count DESC) to /tmp/2021-10-01-affiliations.csv WITH CSV HEADER;
$ csvcut -c 1 /tmp/2021-10-01-affiliations.csv | sed 1d &gt; /tmp/2021-10-01-affiliations.txt
$ ./ilri/ror-lookup.py -i /tmp/2021-10-01-affiliations.txt -r 2021-09-23-ror-data.json -o /tmp/2021-10-01-affili
ations-matching.csv
$ csvgrep -c matched -m true /tmp/2021-10-01-affiliations-matching.csv | sed 1d | wc -l
1879
$ wc -l /tmp/2021-10-01-affiliations.txt
7100 /tmp/2021-10-01-affiliations.txt
</code></pre><ul>
<li>So we have 1879/7100 (26.46%) matching already</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/1-01/'>Read more →</a>
</article>
<nav class="blog-pagination">
@ -256,16 +271,16 @@ $ wc -l /tmp/2021-10-01-affiliations.txt
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
</ol>
</section>

135
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View File

@ -10,7 +10,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" />
<meta property="og:updated_time" content="2021-10-28T18:08:13+03:00" />
<meta property="og:updated_time" content="2021-11-01T10:48:13+02:00" />
@ -31,7 +31,7 @@
"@type": "Person",
"name": "Alan Orth"
},
"dateModified": "2021-09-01T09:14:07+03:00",
"dateModified": "2021-11-01T11:14:07+03:00",
"keywords": "notes, migration, notes",
"description":"Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
}
@ -96,6 +96,56 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2021-11/">November, 2021</a></h2>
<p class="blog-post-meta"><time datetime="2021-11-01T11:14:07+03:00">Mon Nov 01, 2021</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2021-11-01">2021-11-01</h2>
<a href='https://alanorth.github.io/cgspace-notes/2021-11/'>Read more →</a>
</article>
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2021-10/">October, 2021</a></h2>
<p class="blog-post-meta"><time datetime="2021-10-01T11:14:07+03:00">Fri Oct 01, 2021</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2021-10-01">2021-10-01</h2>
<ul>
<li>Export all affiliations on CGSpace and run them against the latest RoR data dump:</li>
</ul>
<pre tabindex="0"><code class="language-console" data-lang="console">localhost/dspace63= &gt; \COPY (SELECT DISTINCT text_value as &quot;cg.contributor.affiliation&quot;, count(*) FROM metadatavalue WHERE dspace_object_id IN (SELECT uuid FROM item) AND metadata_field_id = 211 GROUP BY text_value ORDER BY count DESC) to /tmp/2021-10-01-affiliations.csv WITH CSV HEADER;
$ csvcut -c 1 /tmp/2021-10-01-affiliations.csv | sed 1d &gt; /tmp/2021-10-01-affiliations.txt
$ ./ilri/ror-lookup.py -i /tmp/2021-10-01-affiliations.txt -r 2021-09-23-ror-data.json -o /tmp/2021-10-01-affili
ations-matching.csv
$ csvgrep -c matched -m true /tmp/2021-10-01-affiliations-matching.csv | sed 1d | wc -l
1879
$ wc -l /tmp/2021-10-01-affiliations.txt
7100 /tmp/2021-10-01-affiliations.txt
</code></pre><ul>
<li>So we have 1879/7100 (26.46%) matching already</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2021-10/'>Read more →</a>
</article>
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2021-09/">September, 2021</a></h2>
@ -309,79 +359,6 @@ COPY 20994
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2021-02/">February, 2021</a></h2>
<p class="blog-post-meta"><time datetime="2021-02-01T10:13:54+02:00">Mon Feb 01, 2021</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2021-02-01">2021-02-01</h2>
<ul>
<li>Abenet said that CIP found more duplicate records in their export from AReS
<ul>
<li>I re-opened <a href="https://github.com/ilri/OpenRXV/issues/67">the issue</a> on OpenRXV where we had previously noticed this</li>
<li>The shared link where the duplicates are is here: <a href="https://cgspace.cgiar.org/explorer/shared/heEOz3YBnXdK69bR2ra6">https://cgspace.cgiar.org/explorer/shared/heEOz3YBnXdK69bR2ra6</a></li>
</ul>
</li>
<li>I had a call with CodeObia to discuss the work on OpenRXV</li>
<li>Check the results of the AReS harvesting from last night:</li>
</ul>
<pre tabindex="0"><code class="language-console" data-lang="console">$ curl -s 'http://localhost:9200/openrxv-items-temp/_count?q=*&amp;pretty'
{
&quot;count&quot; : 100875,
&quot;_shards&quot; : {
&quot;total&quot; : 1,
&quot;successful&quot; : 1,
&quot;skipped&quot; : 0,
&quot;failed&quot; : 0
}
}
</code></pre>
<a href='https://alanorth.github.io/cgspace-notes/2021-02/'>Read more →</a>
</article>
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2021-01/">January, 2021</a></h2>
<p class="blog-post-meta"><time datetime="2021-01-03T10:13:54+02:00">Sun Jan 03, 2021</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2021-01-03">2021-01-03</h2>
<ul>
<li>Peter notified me that some filters on AReS were broken again
<ul>
<li>It&rsquo;s the same issue with the field names getting <code>.keyword</code> appended to the end that I already <a href="https://github.com/ilri/OpenRXV/issues/66">filed an issue on OpenRXV about last month</a></li>
<li>I fixed the broken filters (careful to not edit any others, lest they break too!)</li>
</ul>
</li>
<li>Fix an issue with start page number for the DSpace REST API and statistics API in OpenRXV
<ul>
<li>The start page had been &ldquo;1&rdquo; in the UI, but in the backend they were doing some gymnastics to adjust to the zero-based offset/limit/page of the DSpace REST API and the statistics API</li>
<li>I adjusted it to default to 0 and added a note to the admin screen</li>
<li>I realized that this issue was actually causing the first page of 100 statistics to be missing&hellip;</li>
<li>For example, <a href="https://cgspace.cgiar.org/handle/10568/66839">this item</a> has 51 views on CGSpace, but 0 on AReS</li>
</ul>
</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2021-01/'>Read more →</a>
</article>
<nav class="blog-pagination">
@ -406,16 +383,16 @@ COPY 20994
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
</ol>
</section>

62
docs/posts/index.xml
View File

@ -6,7 +6,39 @@
<description>Recent content in Posts on CGSpace Notes</description>
<generator>Hugo -- gohugo.io</generator>
<language>en-us</language>
<lastBuildDate>Wed, 01 Sep 2021 09:14:07 +0300</lastBuildDate><atom:link href="https://alanorth.github.io/cgspace-notes/posts/index.xml" rel="self" type="application/rss+xml" />
<lastBuildDate>Mon, 01 Nov 2021 11:14:07 +0300</lastBuildDate><atom:link href="https://alanorth.github.io/cgspace-notes/posts/index.xml" rel="self" type="application/rss+xml" />
<item>
<title>November, 2021</title>
<link>https://alanorth.github.io/cgspace-notes/2021-11/</link>
<pubDate>Mon, 01 Nov 2021 11:14:07 +0300</pubDate>
<guid>https://alanorth.github.io/cgspace-notes/2021-11/</guid>
<description>&lt;h2 id=&#34;2021-11-01&#34;&gt;2021-11-01&lt;/h2&gt;</description>
</item>
<item>
<title>October, 2021</title>
<link>https://alanorth.github.io/cgspace-notes/2021-10/</link>
<pubDate>Fri, 01 Oct 2021 11:14:07 +0300</pubDate>
<guid>https://alanorth.github.io/cgspace-notes/2021-10/</guid>
<description>&lt;h2 id=&#34;2021-10-01&#34;&gt;2021-10-01&lt;/h2&gt;
&lt;ul&gt;
&lt;li&gt;Export all affiliations on CGSpace and run them against the latest RoR data dump:&lt;/li&gt;
&lt;/ul&gt;
&lt;pre tabindex=&#34;0&#34;&gt;&lt;code class=&#34;language-console&#34; data-lang=&#34;console&#34;&gt;localhost/dspace63= &amp;gt; \COPY (SELECT DISTINCT text_value as &amp;quot;cg.contributor.affiliation&amp;quot;, count(*) FROM metadatavalue WHERE dspace_object_id IN (SELECT uuid FROM item) AND metadata_field_id = 211 GROUP BY text_value ORDER BY count DESC) to /tmp/2021-10-01-affiliations.csv WITH CSV HEADER;
$ csvcut -c 1 /tmp/2021-10-01-affiliations.csv | sed 1d &amp;gt; /tmp/2021-10-01-affiliations.txt
$ ./ilri/ror-lookup.py -i /tmp/2021-10-01-affiliations.txt -r 2021-09-23-ror-data.json -o /tmp/2021-10-01-affili
ations-matching.csv
$ csvgrep -c matched -m true /tmp/2021-10-01-affiliations-matching.csv | sed 1d | wc -l
1879
$ wc -l /tmp/2021-10-01-affiliations.txt
7100 /tmp/2021-10-01-affiliations.txt
&lt;/code&gt;&lt;/pre&gt;&lt;ul&gt;
&lt;li&gt;So we have 1879/7100 (26.46%) matching already&lt;/li&gt;
&lt;/ul&gt;</description>
</item>
<item>
<title>September, 2021</title>
<link>https://alanorth.github.io/cgspace-notes/2021-09/</link>
@ -1501,33 +1533,5 @@ dspacetest=# select text_value from metadatavalue where metadata_field_id=3 and
&lt;/code&gt;&lt;/pre&gt;</description>
</item>
<item>
<title></title>
<link>https://alanorth.github.io/cgspace-notes/1-01/</link>
<pubDate>Mon, 01 Jan 0001 00:00:00 +0000</pubDate>
<guid>https://alanorth.github.io/cgspace-notes/1-01/</guid>
<description>&lt;h2 id=&#34;categories-notes&#34;&gt;e&amp;ndash;
title: &amp;ldquo;October, 2021&amp;rdquo;
date: 2021-10-01T11:14:07+03:00
author: &amp;ldquo;Alan Orth&amp;rdquo;
categories: [&amp;ldquo;Notes&amp;rdquo;]&lt;/h2&gt;
&lt;h2 id=&#34;2021-10-01&#34;&gt;2021-10-01&lt;/h2&gt;
&lt;ul&gt;
&lt;li&gt;Export all affiliations on CGSpace and run them against the latest RoR data dump:&lt;/li&gt;
&lt;/ul&gt;
&lt;pre tabindex=&#34;0&#34;&gt;&lt;code class=&#34;language-console&#34; data-lang=&#34;console&#34;&gt;localhost/dspace63= &amp;gt; \COPY (SELECT DISTINCT text_value as &amp;quot;cg.contributor.affiliation&amp;quot;, count(*) FROM metadatavalue WHERE dspace_object_id IN (SELECT uuid FROM item) AND metadata_field_id = 211 GROUP BY text_value ORDER BY count DESC) to /tmp/2021-10-01-affiliations.csv WITH CSV HEADER;
$ csvcut -c 1 /tmp/2021-10-01-affiliations.csv | sed 1d &amp;gt; /tmp/2021-10-01-affiliations.txt
$ ./ilri/ror-lookup.py -i /tmp/2021-10-01-affiliations.txt -r 2021-09-23-ror-data.json -o /tmp/2021-10-01-affili
ations-matching.csv
$ csvgrep -c matched -m true /tmp/2021-10-01-affiliations-matching.csv | sed 1d | wc -l
1879
$ wc -l /tmp/2021-10-01-affiliations.txt
7100 /tmp/2021-10-01-affiliations.txt
&lt;/code&gt;&lt;/pre&gt;&lt;ul&gt;
&lt;li&gt;So we have 1879/7100 (26.46%) matching already&lt;/li&gt;
&lt;/ul&gt;</description>
</item>
</channel>
</rss>

144
docs/posts/page/2/index.html
View File

@ -10,7 +10,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" />
<meta property="og:updated_time" content="2021-10-28T18:08:13+03:00" />
<meta property="og:updated_time" content="2021-11-01T10:48:13+02:00" />
@ -31,7 +31,7 @@
"@type": "Person",
"name": "Alan Orth"
},
"dateModified": "2021-09-01T09:14:07+03:00",
"dateModified": "2021-11-01T11:14:07+03:00",
"keywords": "notes, migration, notes",
"description":"Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
}
@ -96,6 +96,79 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2021-02/">February, 2021</a></h2>
<p class="blog-post-meta"><time datetime="2021-02-01T10:13:54+02:00">Mon Feb 01, 2021</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2021-02-01">2021-02-01</h2>
<ul>
<li>Abenet said that CIP found more duplicate records in their export from AReS
<ul>
<li>I re-opened <a href="https://github.com/ilri/OpenRXV/issues/67">the issue</a> on OpenRXV where we had previously noticed this</li>
<li>The shared link where the duplicates are is here: <a href="https://cgspace.cgiar.org/explorer/shared/heEOz3YBnXdK69bR2ra6">https://cgspace.cgiar.org/explorer/shared/heEOz3YBnXdK69bR2ra6</a></li>
</ul>
</li>
<li>I had a call with CodeObia to discuss the work on OpenRXV</li>
<li>Check the results of the AReS harvesting from last night:</li>
</ul>
<pre tabindex="0"><code class="language-console" data-lang="console">$ curl -s 'http://localhost:9200/openrxv-items-temp/_count?q=*&amp;pretty'
{
&quot;count&quot; : 100875,
&quot;_shards&quot; : {
&quot;total&quot; : 1,
&quot;successful&quot; : 1,
&quot;skipped&quot; : 0,
&quot;failed&quot; : 0
}
}
</code></pre>
<a href='https://alanorth.github.io/cgspace-notes/2021-02/'>Read more →</a>
</article>
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2021-01/">January, 2021</a></h2>
<p class="blog-post-meta"><time datetime="2021-01-03T10:13:54+02:00">Sun Jan 03, 2021</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2021-01-03">2021-01-03</h2>
<ul>
<li>Peter notified me that some filters on AReS were broken again
<ul>
<li>It&rsquo;s the same issue with the field names getting <code>.keyword</code> appended to the end that I already <a href="https://github.com/ilri/OpenRXV/issues/66">filed an issue on OpenRXV about last month</a></li>
<li>I fixed the broken filters (careful to not edit any others, lest they break too!)</li>
</ul>
</li>
<li>Fix an issue with start page number for the DSpace REST API and statistics API in OpenRXV
<ul>
<li>The start page had been &ldquo;1&rdquo; in the UI, but in the backend they were doing some gymnastics to adjust to the zero-based offset/limit/page of the DSpace REST API and the statistics API</li>
<li>I adjusted it to default to 0 and added a note to the admin screen</li>
<li>I realized that this issue was actually causing the first page of 100 statistics to be missing&hellip;</li>
<li>For example, <a href="https://cgspace.cgiar.org/handle/10568/66839">this item</a> has 51 views on CGSpace, but 0 on AReS</li>
</ul>
</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2021-01/'>Read more →</a>
</article>
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2020-12/">December, 2020</a></h2>
@ -313,65 +386,6 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2020-05/">May, 2020</a></h2>
<p class="blog-post-meta"><time datetime="2020-05-02T09:52:04+03:00">Sat May 02, 2020</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2020-05-02">2020-05-02</h2>
<ul>
<li>Peter said that CTA is having problems submitting an item to CGSpace
<ul>
<li>Looking at the PostgreSQL stats it seems to be the same issue that Tezira was having last week, as I see the number of connections in &lsquo;idle in transaction&rsquo; and &lsquo;waiting for lock&rsquo; state are increasing again</li>
<li>I see that CGSpace (linode18) is still using PostgreSQL JDBC driver version 42.2.11, and there were some bugs related to transactions fixed in 42.2.12 (which I had updated in the Ansible playbooks, but not deployed yet)</li>
</ul>
</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2020-05/'>Read more →</a>
</article>
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2020-04/">April, 2020</a></h2>
<p class="blog-post-meta"><time datetime="2020-04-02T10:53:24+03:00">Thu Apr 02, 2020</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2020-04-02">2020-04-02</h2>
<ul>
<li>Maria asked me to update Charles Staver&rsquo;s ORCID iD in the submission template and on CGSpace, as his name was lower case before, and now he has corrected it
<ul>
<li>I updated the fifty-eight existing items on CGSpace</li>
</ul>
</li>
<li>Looking into the items Udana had asked about last week that were missing Altmetric donuts:
<ul>
<li><a href="https://hdl.handle.net/10568/103225">The first</a> is still missing its DOI, so I added it and <a href="https://twitter.com/mralanorth/status/1245632619661766657">tweeted its handle</a> (after a few hours there was a donut with score 222)</li>
<li><a href="https://hdl.handle.net/10568/106899">The second item</a> now has a donut with score 2 since I <a href="https://twitter.com/mralanorth/status/1243158045540134913">tweeted its handle</a> last week</li>
<li><a href="https://hdl.handle.net/10568/107258">The third item</a> now has a donut with score 1 since I <a href="https://twitter.com/mralanorth/status/1243158786392625153">tweeted it</a> last week</li>
</ul>
</li>
<li>On the same note, the <a href="https://hdl.handle.net/10568/106573">one item</a> Abenet pointed out last week now has a donut with score of 104 after I <a href="https://twitter.com/mralanorth/status/1243163710241345536">tweeted it</a> last week</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2020-04/'>Read more →</a>
</article>
<nav class="blog-pagination">
<a class="btn btn-outline-primary" href="/cgspace-notes/posts/" rel="prev" role="button">Previous page</a>
@ -396,16 +410,16 @@
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
</ol>
</section>

125
docs/posts/page/3/index.html
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@ -10,7 +10,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" />
<meta property="og:updated_time" content="2021-10-28T18:08:13+03:00" />
<meta property="og:updated_time" content="2021-11-01T10:48:13+02:00" />
@ -31,7 +31,7 @@
"@type": "Person",
"name": "Alan Orth"
},
"dateModified": "2021-09-01T09:14:07+03:00",
"dateModified": "2021-11-01T11:14:07+03:00",
"keywords": "notes, migration, notes",
"description":"Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
}
@ -96,6 +96,65 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2020-05/">May, 2020</a></h2>
<p class="blog-post-meta"><time datetime="2020-05-02T09:52:04+03:00">Sat May 02, 2020</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2020-05-02">2020-05-02</h2>
<ul>
<li>Peter said that CTA is having problems submitting an item to CGSpace
<ul>
<li>Looking at the PostgreSQL stats it seems to be the same issue that Tezira was having last week, as I see the number of connections in &lsquo;idle in transaction&rsquo; and &lsquo;waiting for lock&rsquo; state are increasing again</li>
<li>I see that CGSpace (linode18) is still using PostgreSQL JDBC driver version 42.2.11, and there were some bugs related to transactions fixed in 42.2.12 (which I had updated in the Ansible playbooks, but not deployed yet)</li>
</ul>
</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2020-05/'>Read more →</a>
</article>
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2020-04/">April, 2020</a></h2>
<p class="blog-post-meta"><time datetime="2020-04-02T10:53:24+03:00">Thu Apr 02, 2020</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2020-04-02">2020-04-02</h2>
<ul>
<li>Maria asked me to update Charles Staver&rsquo;s ORCID iD in the submission template and on CGSpace, as his name was lower case before, and now he has corrected it
<ul>
<li>I updated the fifty-eight existing items on CGSpace</li>
</ul>
</li>
<li>Looking into the items Udana had asked about last week that were missing Altmetric donuts:
<ul>
<li><a href="https://hdl.handle.net/10568/103225">The first</a> is still missing its DOI, so I added it and <a href="https://twitter.com/mralanorth/status/1245632619661766657">tweeted its handle</a> (after a few hours there was a donut with score 222)</li>
<li><a href="https://hdl.handle.net/10568/106899">The second item</a> now has a donut with score 2 since I <a href="https://twitter.com/mralanorth/status/1243158045540134913">tweeted its handle</a> last week</li>
<li><a href="https://hdl.handle.net/10568/107258">The third item</a> now has a donut with score 1 since I <a href="https://twitter.com/mralanorth/status/1243158786392625153">tweeted it</a> last week</li>
</ul>
</li>
<li>On the same note, the <a href="https://hdl.handle.net/10568/106573">one item</a> Abenet pointed out last week now has a donut with score of 104 after I <a href="https://twitter.com/mralanorth/status/1243163710241345536">tweeted it</a> last week</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2020-04/'>Read more →</a>
</article>
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2020-03/">March, 2020</a></h2>
@ -355,60 +414,6 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2019-07/">July, 2019</a></h2>
<p class="blog-post-meta"><time datetime="2019-07-01T12:13:51+03:00">Mon Jul 01, 2019</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2019-07-01">2019-07-01</h2>
<ul>
<li>Create an &ldquo;AfricaRice books and book chapters&rdquo; collection on CGSpace for AfricaRice</li>
<li>Last month Sisay asked why the following &ldquo;most popular&rdquo; statistics link for a range of months in 2018 works for the CIAT community on DSpace Test, but not on CGSpace:
<ul>
<li><a href="https://dspacetest.cgiar.org/handle/10568/35697/most-popular/item#simplefilter=custom&amp;time_filter_end_date=01%2F12%2F2018">DSpace Test</a></li>
<li><a href="https://cgspace.cgiar.org/handle/10568/35697/most-popular/item#simplefilter=custom&amp;time_filter_end_date=01%2F12%2F2018">CGSpace</a></li>
</ul>
</li>
<li>Abenet had another similar issue a few days ago when trying to find the stats for 2018 in the RTB community</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2019-07/'>Read more →</a>
</article>
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2019-06/">June, 2019</a></h2>
<p class="blog-post-meta"><time datetime="2019-06-02T10:57:51+03:00">Sun Jun 02, 2019</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2019-06-02">2019-06-02</h2>
<ul>
<li>Merge the <a href="https://github.com/ilri/DSpace/pull/425">Solr filterCache</a> and <a href="https://github.com/ilri/DSpace/pull/426">XMLUI ISI journal</a> changes to the <code>5_x-prod</code> branch and deploy on CGSpace</li>
<li>Run system updates on CGSpace (linode18) and reboot it</li>
</ul>
<h2 id="2019-06-03">2019-06-03</h2>
<ul>
<li>Skype with Marie-Angélique and Abenet about <a href="https://agriculturalsemantics.github.io/cg-core/cgcore.html">CG Core v2</a></li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2019-06/'>Read more →</a>
</article>
<nav class="blog-pagination">
<a class="btn btn-outline-primary" href="/cgspace-notes/posts/page/2/" rel="prev" role="button">Previous page</a>
@ -433,16 +438,16 @@
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
</ol>
</section>

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