alanorth/csv-metadata-quality
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csv-metadata-quality/README.md
Alan Orth 1f65a28307
Add support for validating subjects against AGROVOC 
Checks values in the dc.subject or dcterms.subject field against the
AGROVOC REST API hosted by FAO. Code borrowed from agrovoc-lookup.py.

See: http://agrovoc.uniroma2.it/agrovoc/agrovoc/en/
See: https://github.com/ilri/DSpace/blob/5_x-prod/agrovoc-lookup.py
2019-07-30 00:30:31 +03:00

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CSV Metadata Quality Build Status builds.sr.ht status

A simple but opinionated metadata quality checker and fixer designed to work with CSVs in the DSpace ecosystem. Supports multi-value fields using the standard DSpace value separator ("||"). Despite the name it does support reading Excel files.

Requires Python 3.6 or greater. CSV and Excel support comes from the Pandas library.

Functionality

  • Read/write CSV files
  • Read Excel files
  • Validate dates, ISSNs, ISBNs, and multi-value separators ("||")
  • Validate languages against ISO 639-2 and ISO 639-3
  • Validate subjects against AGROVOC REST API
  • Fix leading, trailing, and excessive whitespace
  • Fix invalid multi-value separators (|) using --unsafe-fixes
  • Remove unnecessary Unicode like non-breaking spaces, replacement characters, etc
  • Check for "suspicious" characters that indicate encoding or copy/paste issues, for example "foreˆt" should be "forêt"
  • Remove duplicate metadata values

Installation

The easiest way to install CSV Metadata Quality is with pipenv:

$ git clone https://git.sr.ht/~alanorth/csv-metadata-quality
$ cd csv-metadata-quality
$ pipenv install
$ pipenv shell

Otherwise, if you don't have pipenv, you can use a vanilla Python virtual environment:

$ git clone https://git.sr.ht/~alanorth/csv-metadata-quality
$ cd csv-metadata-quality
$ python3 -m venv venv
$ source venv/bin/activate
$ pip install -r requirements.txt

Usage

Run CSV Metadata Quality with the --help flag to see available options:

$ python -m csv_metadata_quality --help

To validate and clean a CSV file you must specify input and output files using the -i and -o options. For example, using the included test file:

$ python -m csv_metadata_quality -i data/test.csv -o /tmp/test.csv

You can enable "unsafe fixes" with the --unsafe-fixes option. Currently this will attempt to fix things like invalid multi-value separators (|). This is considered "unsafe" because it's theoretically possible for the | to be used legitimately in a metadata value, but in my experience it's always a typo where the user was attempting to use multiple metadata values, for example: Kenya|Tanzania.

Todo

  • Reporting / summary
  • Real logging

License

This work is licensed under the GPLv3.

The license allows you to use and modify the work for personal and commercial purposes, but if you distribute the work you must provide users with a means to access the source code for the version you are distributing. Read more about the GPLv3 at TL;DR Legal.