Version 0.4.6

CHANGELOG.md: Fix headers
.drone.yml: We need some stuff to build pyicu now
2025-05-10 15:16:01 +02:00 · 2021-03-11 12:14:54 +02:00 · 2021-03-11 12:13:22 +02:00 · 2021-03-11 12:07:28 +02:00 · 2021-03-11 11:47:24 +02:00 · 2021-03-11 11:45:25 +02:00
15 changed files with 489 additions and 357 deletions
--- a/.drone.yml
+++ b/.drone.yml
@ -9,6 +9,7 @@ steps:
  commands:
  - id
  - python -V
+  - apt update && apt install -y gcc g++ libicu-dev pkg-config
  - pip install -r requirements-dev.txt
  - pytest
  - python setup.py install
@ -25,6 +26,7 @@ steps:
  commands:
  - id
  - python -V
+  - apt update && apt install -y gcc g++ libicu-dev pkg-config
  - pip install -r requirements-dev.txt
  - pytest
  - python setup.py install
@ -41,6 +43,7 @@ steps:
  commands:
  - id
  - python -V
+  - apt update && apt install -y gcc g++ libicu-dev pkg-config
  - pip install -r requirements-dev.txt
  - pytest
  - python setup.py install
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@ -4,6 +4,37 @@ All notable changes to this project will be documented in this file.
 The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/),
 and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).

+## [0.4.6] - 2021-03-11
+### Added
+- Validation of dcterms.license field against SPDX license identifiers 
+
+### Changed
+- Use DCTERMS fields where possible in `data/test.csv`
+
+### Updated
+- Run `poetry update` to update project dependencies
+
+### Fixed
+- Output for all fixes should be green, because it is good
+
+## [0.4.5] - 2021-03-04
+### Added
+- Check dates in dcterms.issued field as well, not just fields that have the
+word "date" in them
+
+### Updated
+- Run `poetry update` to update project dependencies
+
+## [0.4.4] - 2021-02-21
+### Added
+- Accept dates formatted in ISO 8601 extended with combined date and time, for
+example: 2020-08-31T11:04:56Z
+- Colorized output: red for errors, yellow for warnings and information, green
+for changes
+
+### Updated
+- Run `poetry update` to update project dependencies
+
 ## [0.4.3] - 2021-01-26
 ### Changed
 - Reformat with black
--- a/README.md
+++ b/README.md
@ -1,8 +1,12 @@
-# CSV Metadata Quality ![GitHub Actions](https://github.com/ilri/csv-metadata-quality/workflows/Build%20and%20Test/badge.svg) [![Build Status](https://ci.mjanja.ch/api/badges/alanorth/csv-metadata-quality/status.svg)](https://ci.mjanja.ch/alanorth/csv-metadata-quality)
-A simple, but opinionated metadata quality checker and fixer designed to work with CSVs in the DSpace ecosystem (though it could theoretically work on any CSV that uses Dublin Core fields as columns). The implementation is essentially a pipeline of checks and fixes that begins with splitting multi-value fields on the standard DSpace "||" separator, trimming leading/trailing whitespace, and then proceeding to more specialized cases like ISSNs, ISBNs, languages, etc.
+# DSpace CSV Metadata Quality Checker ![GitHub Actions](https://github.com/ilri/csv-metadata-quality/workflows/Build%20and%20Test/badge.svg) [![Build Status](https://ci.mjanja.ch/api/badges/alanorth/csv-metadata-quality/status.svg)](https://ci.mjanja.ch/alanorth/csv-metadata-quality)
+A simple, but opinionated metadata quality checker and fixer designed to work with CSVs in the DSpace ecosystem (though it could theoretically work on any CSV that uses Dublin Core fields as columns). The implementation is essentially a pipeline of checks and fixes that begins with splitting multi-value fields on the standard DSpace "||" separator, trimming leading/trailing whitespace, and then proceeding to more specialized cases like ISSNs, ISBNs, languages, unnecessary Unicode, AGROVOC terms, etc.

 Requires Python 3.7 or greater (3.8 recommended). CSV and Excel support comes from the [Pandas](https://pandas.pydata.org/) library, though your mileage may vary with Excel because this is much less tested.

+If you use the DSpace CSV metadata quality checker please cite:
+
+*Orth, A. 2019. DSpace CSV metadata quality checker. Nairobi, Kenya: ILRI. https://hdl.handle.net/10568/110997.*
+
 ## Functionality

 - Validate dates, ISSNs, ISBNs, and multi-value separators ("||")
@ -99,14 +103,18 @@ This currently uses the [Python langid](https://github.com/saffsd/langid.py) lib
 - Better logging, for example with INFO, WARN, and ERR levels
 - Verbose, debug, or quiet options
 - Warn if an author is shorter than 3 characters?
- Validate dc.rights field against SPDX? Perhaps with an option like `-m spdx` to enable the spdx module?
 - Validate DOIs? Normalize to https://doi.org format? Or use just the DOI part: 10.1016/j.worlddev.2010.06.006
 - Warn if two items use the same file in `filename` column
 - Add an option to drop invalid AGROVOC subjects?
 - Add tests for application invocation, ie `tests/test_app.py`?
 - Validate ISSNs or journal titles against CrossRef API?
- Better ISO 8601 date parsing (currently only supports simple dates, perhaps we need to use dateutil.parser.parseiso())
- Fix lazy date check (assumes field name has "date" but could be dcterms.issued etc!)
+- Add configurable field validation, like specify a field name and a validation file?
+  - Perhaps like --validate=field.name,filename
+- Add some row-based item sanity checks and fixes:
+    - Warn if item is Open Access, but missing a filename or URL
+    - Warn if item is Open Access, but missing a license
+    - Warn if item has an ISSN but no journal title
+    - Update journal titles from ISSN

 ## License
 This work is licensed under the [GPLv3](https://www.gnu.org/licenses/gpl-3.0.en.html).
--- a/csv_metadata_quality/app.py
+++ b/csv_metadata_quality/app.py
@ -4,6 +4,7 @@ import signal
 import sys

 import pandas as pd
+from colorama import Fore

 import csv_metadata_quality.check as check
 import csv_metadata_quality.experimental as experimental
@ -77,7 +78,7 @@ def run(argv):
                if column == exclude and skip is False:
                    skip = True
            if skip:
-                print(f"Skipping {column}")
+                print(f"{Fore.YELLOW}Skipping {Fore.RESET}{column}")

                continue

@ -141,7 +142,7 @@ def run(argv):
            df[column] = df[column].apply(check.isbn)

        # Check: invalid date
-        match = re.match(r"^.*?date.*$", column)
+        match = re.match(r"^.*?(date|dcterms\.issued).*$", column)
        if match is not None:
            df[column] = df[column].apply(check.date, field_name=column)

@ -149,6 +150,11 @@ def run(argv):
        if column == "filename":
            df[column] = df[column].apply(check.filename_extension)

+        # Check: SPDX license identifier
+        match = re.match(r"dcterms\.license.*$", column)
+        if match is not None:
+            df[column] = df[column].apply(check.spdx_license_identifier)
+
    ##
    # Perform some checks on rows so we can consider items as a whole rather
    # than simple on a field-by-field basis. This allows us to check whether
--- a/csv_metadata_quality/check.py
+++ b/csv_metadata_quality/check.py
@ -1,9 +1,14 @@
+import re
 from datetime import datetime, timedelta

 import pandas as pd
 import requests
 import requests_cache
+import spdx_license_list
+from colorama import Fore
 from pycountry import languages
+from stdnum import isbn as stdnum_isbn
+from stdnum import issn as stdnum_issn


 def issn(field):
@ -16,8 +21,6 @@ def issn(field):
    See: https://arthurdejong.org/python-stdnum/doc/1.11/index.html#stdnum.module.is_valid
    """

-    from stdnum import issn
-
    # Skip fields with missing values
    if pd.isna(field):
        return
@ -25,8 +28,8 @@ def issn(field):
    # Try to split multi-value field on "||" separator
    for value in field.split("||"):

-        if not issn.is_valid(value):
-            print(f"Invalid ISSN: {value}")
+        if not stdnum_issn.is_valid(value):
+            print(f"{Fore.RED}Invalid ISSN: {Fore.RESET}{value}")

    return field

@ -41,8 +44,6 @@ def isbn(field):
    See: https://arthurdejong.org/python-stdnum/doc/1.11/index.html#stdnum.module.is_valid
    """

-    from stdnum import isbn
-
    # Skip fields with missing values
    if pd.isna(field):
        return
@ -50,8 +51,8 @@ def isbn(field):
    # Try to split multi-value field on "||" separator
    for value in field.split("||"):

-        if not isbn.is_valid(value):
-            print(f"Invalid ISBN: {value}")
+        if not stdnum_isbn.is_valid(value):
+            print(f"{Fore.RED}Invalid ISBN: {Fore.RESET}{value}")

    return field

@ -66,8 +67,6 @@ def separators(field, field_name):
    Prints the field with the invalid multi-value separator.
    """

-    import re
-
    # Skip fields with missing values
    if pd.isna(field):
        return
@ -76,7 +75,9 @@ def separators(field, field_name):
    for value in field.split("||"):
        # Check if the current value is blank
        if value == "":
-            print(f"Unnecessary multi-value separator ({field_name}): {field}")
+            print(
+                f"{Fore.RED}Unnecessary multi-value separator ({field_name}): {Fore.RESET}{field}"
+            )

            continue

@ -85,7 +86,9 @@ def separators(field, field_name):

        # Check if there was a match
        if match:
-            print(f"Invalid multi-value separator ({field_name}): {field}")
+            print(
+                f"{Fore.RED}Invalid multi-value separator ({field_name}): {Fore.RESET}{field}"
+            )

    return field

@ -102,7 +105,7 @@ def date(field, field_name):
    """

    if pd.isna(field):
-        print(f"Missing date ({field_name}).")
+        print(f"{Fore.RED}Missing date ({field_name}).{Fore.RESET}")

        return

@ -111,7 +114,9 @@ def date(field, field_name):

    # We don't allow multi-value date fields
    if len(multiple_dates) > 1:
-        print(f"Multiple dates not allowed ({field_name}): {field}")
+        print(
+            f"{Fore.RED}Multiple dates not allowed ({field_name}): {Fore.RESET}{field}"
+        )

        return field

@ -137,7 +142,15 @@ def date(field, field_name):

        return field
    except ValueError:
-        print(f"Invalid date ({field_name}): {field}")
+        pass
+
+    try:
+        # Check if date is valid YYYY-MM-DDTHH:MM:SSZ format
+        datetime.strptime(field, "%Y-%m-%dT%H:%M:%SZ")
+
+        return field
+    except ValueError:
+        print(f"{Fore.RED}Invalid date ({field_name}): {Fore.RESET}{field}")

        return field

@ -170,9 +183,7 @@ def suspicious_characters(field, field_name):
            # character and spanning enough of the rest to give a preview,
            # but not too much to cause the line to break in terminals with
            # a default of 80 characters width.
-            suspicious_character_msg = (
-                f"Suspicious character ({field_name}): {field_subset}"
-            )
+            suspicious_character_msg = f"{Fore.YELLOW}Suspicious character ({field_name}): {Fore.RESET}{field_subset}"
            print(f"{suspicious_character_msg:1.80}")

    return field
@ -197,16 +208,16 @@ def language(field):
        # can check it against ISO 639-1 or ISO 639-3 accordingly.
        if len(value) == 2:
            if not languages.get(alpha_2=value):
-                print(f"Invalid ISO 639-1 language: {value}")
+                print(f"{Fore.RED}Invalid ISO 639-1 language: {Fore.RESET}{value}")

                pass
        elif len(value) == 3:
            if not languages.get(alpha_3=value):
-                print(f"Invalid ISO 639-3 language: {value}")
+                print(f"{Fore.RED}Invalid ISO 639-3 language: {Fore.RESET}{value}")

                pass
        else:
-            print(f"Invalid language: {value}")
+            print(f"{Fore.RED}Invalid language: {Fore.RESET}{value}")

    return field

@ -248,7 +259,7 @@ def agrovoc(field, field_name):

            # check if there are any results
            if len(data["results"]) == 0:
-                print(f"Invalid AGROVOC ({field_name}): {value}")
+                print(f"{Fore.RED}Invalid AGROVOC ({field_name}): {Fore.RESET}{value}")

    return field

@ -264,8 +275,6 @@ def filename_extension(field):
    than .pdf, .xls(x), .doc(x), ppt(x), case insensitive).
    """

-    import re
-
    # Skip fields with missing values
    if pd.isna(field):
        return
@ -301,6 +310,26 @@ def filename_extension(field):
                break

        if filename_extension_match is False:
-            print(f"Filename with uncommon extension: {value}")
+            print(f"{Fore.YELLOW}Filename with uncommon extension: {Fore.RESET}{value}")
+
+    return field
+
+
+def spdx_license_identifier(field):
+    """Check if a license is a valid SPDX identifier.
+
+    Prints the value if it is invalid.
+    """
+
+    # Skip fields with missing values
+    if pd.isna(field):
+        return
+
+    # Try to split multi-value field on "||" separator
+    for value in field.split("||"):
+        if value not in spdx_license_list.LICENSES:
+            print(f"{Fore.YELLOW}Non-SPDX license identifier: {Fore.RESET}{value}")
+
+            pass

    return field
--- a/csv_metadata_quality/experimental.py
+++ b/csv_metadata_quality/experimental.py
@ -1,4 +1,5 @@
 import pandas as pd
+from colorama import Fore


 def correct_language(row):
@ -10,10 +11,11 @@ def correct_language(row):
    language and returns the value in the language field if it does match.
    """

-    from pycountry import languages
-    import langid
    import re

+    import langid
+    from pycountry import languages
+
    # Initialize some variables at global scope so that we can set them in the
    # loop scope below and still be able to access them afterwards.
    language = ""
@ -83,12 +85,12 @@ def correct_language(row):
    detected_language = languages.get(alpha_2=langid_classification[0])
    if len(language) == 2 and language != detected_language.alpha_2:
        print(
-            f"Possibly incorrect language {language} (detected {detected_language.alpha_2}): {title}"
+            f"{Fore.YELLOW}Possibly incorrect language {language} (detected {detected_language.alpha_2}): {Fore.RESET}{title}"
        )

    elif len(language) == 3 and language != detected_language.alpha_3:
        print(
-            f"Possibly incorrect language {language} (detected {detected_language.alpha_3}): {title}"
+            f"{Fore.YELLOW}Possibly incorrect language {language} (detected {detected_language.alpha_3}): {Fore.RESET}{title}"
        )

    else:
--- a/csv_metadata_quality/fix.py
+++ b/csv_metadata_quality/fix.py
@ -2,6 +2,7 @@ import re
 from unicodedata import normalize

 import pandas as pd
+from colorama import Fore

 from csv_metadata_quality.util import is_nfc

@ -29,7 +30,9 @@ def whitespace(field, field_name):
        match = re.findall(pattern, value)

        if match:
-            print(f"Removing excessive whitespace ({field_name}): {value}")
+            print(
+                f"{Fore.GREEN}Removing excessive whitespace ({field_name}): {Fore.RESET}{value}"
+            )
            value = re.sub(pattern, " ", value)

        # Save cleaned value
@ -62,7 +65,9 @@ def separators(field, field_name):
    for value in field.split("||"):
        # Check if the value is blank and skip it
        if value == "":
-            print(f"Fixing unnecessary multi-value separator ({field_name}): {field}")
+            print(
+                f"{Fore.GREEN}Fixing unnecessary multi-value separator ({field_name}): {Fore.RESET}{field}"
+            )

            continue

@ -71,7 +76,9 @@ def separators(field, field_name):
        match = re.findall(pattern, value)

        if match:
-            print(f"Fixing invalid multi-value separator ({field_name}): {value}")
+            print(
+                f"{Fore.GREEN}Fixing invalid multi-value separator ({field_name}): {Fore.RESET}{value}"
+            )

            value = re.sub(pattern, "||", value)

@ -107,7 +114,7 @@ def unnecessary_unicode(field):
    match = re.findall(pattern, field)

    if match:
-        print(f"Removing unnecessary Unicode (U+200B): {field}")
+        print(f"{Fore.GREEN}Removing unnecessary Unicode (U+200B): {Fore.RESET}{field}")
        field = re.sub(pattern, "", field)

    # Check for replacement characters (U+FFFD)
@ -115,7 +122,7 @@ def unnecessary_unicode(field):
    match = re.findall(pattern, field)

    if match:
-        print(f"Removing unnecessary Unicode (U+FFFD): {field}")
+        print(f"{Fore.GREEN}Removing unnecessary Unicode (U+FFFD): {Fore.RESET}{field}")
        field = re.sub(pattern, "", field)

    # Check for no-break spaces (U+00A0)
@ -123,7 +130,9 @@ def unnecessary_unicode(field):
    match = re.findall(pattern, field)

    if match:
-        print(f"Replacing unnecessary Unicode (U+00A0): {field}")
+        print(
+            f"{Fore.GREEN}Replacing unnecessary Unicode (U+00A0): {Fore.RESET}{field}"
+        )
        field = re.sub(pattern, " ", field)

    # Check for soft hyphens (U+00AD), sometimes preceeded with a normal hyphen
@ -131,7 +140,9 @@ def unnecessary_unicode(field):
    match = re.findall(pattern, field)

    if match:
-        print(f"Replacing unnecessary Unicode (U+00AD): {field}")
+        print(
+            f"{Fore.GREEN}Replacing unnecessary Unicode (U+00AD): {Fore.RESET}{field}"
+        )
        field = re.sub(pattern, "-", field)

    return field
@ -156,7 +167,9 @@ def duplicates(field, field_name):
        if value not in new_values:
            new_values.append(value)
        else:
-            print(f"Removing duplicate value ({field_name}): {value}")
+            print(
+                f"{Fore.GREEN}Removing duplicate value ({field_name}): {Fore.RESET}{value}"
+            )

    # Create a new field consisting of all values joined with "||"
    new_field = "||".join(new_values)
@ -189,7 +202,7 @@ def newlines(field):
    match = re.findall(r"\n", field)

    if match:
-        print(f"Removing newline: {field}")
+        print(f"{Fore.GREEN}Removing newline: {Fore.RESET}{field}")
        field = field.replace("\n", "")

    return field
@ -213,7 +226,9 @@ def comma_space(field, field_name):
    match = re.findall(r",\w", field)

    if match:
-        print(f"Adding space after comma ({field_name}): {field}")
+        print(
+            f"{Fore.GREEN}Adding space after comma ({field_name}): {Fore.RESET}{field}"
+        )
        field = re.sub(r",(\w)", r", \1", field)

    return field
@ -234,7 +249,7 @@ def normalize_unicode(field, field_name):

    # Check if the current string is using normalized Unicode (NFC)
    if not is_nfc(field):
-        print(f"Normalizing Unicode ({field_name}): {field}")
+        print(f"{Fore.GREEN}Normalizing Unicode ({field_name}): {Fore.RESET}{field}")
        field = normalize("NFC", field)

    return field
--- a/csv_metadata_quality/version.py
+++ b/csv_metadata_quality/version.py
@ -1 +1 @@
-VERSION = "0.4.3"
+VERSION = "0.4.6"
--- a/data/test.csv
+++ b/data/test.csv
@ -1,31 +1,32 @@
-dc.title,dc.date.issued,dc.identifier.issn,dc.identifier.isbn,dc.language.iso,dc.subject,cg.coverage.country,filename
- Leading space,2019-07-29,,,,,,
-Trailing space ,2019-07-29,,,,,,
-Excessive  space,2019-07-29,,,,,,
-Miscellaenous ||whitespace | issues ,2019-07-29,,,,,,
-Duplicate||Duplicate,2019-07-29,,,,,,
-Invalid ISSN,2019-07-29,2321-2302,,,,,
-Invalid ISBN,2019-07-29,,978-0-306-40615-6,,,,
-Multiple valid ISSNs,2019-07-29,0378-5955||0024-9319,,,,,
-Multiple valid ISBNs,2019-07-29,,99921-58-10-7||978-0-306-40615-7,,,,
-Invalid date,2019-07-260,,,,,,
-Multiple dates,2019-07-26||2019-01-10,,,,,,
-Invalid multi-value separator,2019-07-29,0378-5955|0024-9319,,,,,
-Unnecessary Unicode,2019-07-29,,,,,,
-Suspicious character||foreˆt,2019-07-29,,,,,,
-Invalid ISO 639-1 (alpha 2) language,2019-07-29,,,jp,,,
-Invalid ISO 639-3 (alpha 3) language,2019-07-29,,,chi,,,
-Invalid language,2019-07-29,,,Span,,,
-Invalid AGROVOC subject,2019-07-29,,,,FOREST,,
+dc.title,dcterms.issued,dc.identifier.issn,dc.identifier.isbn,dcterms.language,dcterms.subject,cg.coverage.country,filename,dcterms.license
+ Leading space,2019-07-29,,,,,,,
+Trailing space ,2019-07-29,,,,,,,
+Excessive  space,2019-07-29,,,,,,,
+Miscellaenous ||whitespace | issues ,2019-07-29,,,,,,,
+Duplicate||Duplicate,2019-07-29,,,,,,,
+Invalid ISSN,2019-07-29,2321-2302,,,,,,
+Invalid ISBN,2019-07-29,,978-0-306-40615-6,,,,,
+Multiple valid ISSNs,2019-07-29,0378-5955||0024-9319,,,,,,
+Multiple valid ISBNs,2019-07-29,,99921-58-10-7||978-0-306-40615-7,,,,,
+Invalid date,2019-07-260,,,,,,,
+Multiple dates,2019-07-26||2019-01-10,,,,,,,
+Invalid multi-value separator,2019-07-29,0378-5955|0024-9319,,,,,,
+Unnecessary Unicode,2019-07-29,,,,,,,
+Suspicious character||foreˆt,2019-07-29,,,,,,,
+Invalid ISO 639-1 (alpha 2) language,2019-07-29,,,jp,,,,
+Invalid ISO 639-3 (alpha 3) language,2019-07-29,,,chi,,,,
+Invalid language,2019-07-29,,,Span,,,,
+Invalid AGROVOC subject,2019-07-29,,,,FOREST,,,
 Newline (LF),2019-07-30,,,,"TANZA
-NIA",,
-Missing date,,,,,,,
-Invalid country,2019-08-01,,,,,KENYAA,
-Uncommon filename extension,2019-08-10,,,,,,file.pdf.lck
-Unneccesary unicode (U+002D + U+00AD),2019-08-10,,978-92-9043-823-6,,,,
-"Missing space,after comma",2019-08-27,,,,,,
-Incorrect ISO 639-1 language,2019-09-26,,,es,,,
-Incorrect ISO 639-3 language,2019-09-26,,,spa,,,
-Composéd Unicode,2020-01-14,,,,,,
-Decomposéd Unicode,2020-01-14,,,,,,
-Unnecessary multi-value separator,2021-01-03,0378-5955||,,,,,
+NIA",,,
+Missing date,,,,,,,,
+Invalid country,2019-08-01,,,,,KENYAA,,
+Uncommon filename extension,2019-08-10,,,,,,file.pdf.lck,
+Unneccesary unicode (U+002D + U+00AD),2019-08-10,,978-92-9043-823-6,,,,,
+"Missing space,after comma",2019-08-27,,,,,,,
+Incorrect ISO 639-1 language,2019-09-26,,,es,,,,
+Incorrect ISO 639-3 language,2019-09-26,,,spa,,,,
+Composéd Unicode,2020-01-14,,,,,,,
+Decomposéd Unicode,2020-01-14,,,,,,,
+Unnecessary multi-value separator,2021-01-03,0378-5955||,,,,,,
+Invalid SPDX license identifier,2021-03-11,,,,,,,CC-BY
--- a/poetry.lock
+++ b/poetry.lock
@ -1,6 +1,6 @@
 [[package]]
 name = "agate"
-version = "1.6.1"
+version = "1.6.2"
 description = "A data analysis library that is optimized for humans instead of machines."
 category = "dev"
 optional = false
@ -11,6 +11,7 @@ Babel = ">=2.0"
 isodate = ">=0.5.4"
 leather = ">=0.3.2"
 parsedatetime = ">=2.1"
+PyICU = ">=2.4.2"
 python-slugify = ">=1.2.1"
 pytimeparse = ">=1.1.5"
 six = ">=1.9.0"
@ -67,7 +68,6 @@ description = "Disable App Nap on macOS >= 10.9"
 category = "dev"
 optional = false
 python-versions = "*"
-marker = "python_version >= \"3.7\" and python_version < \"4.0\" and sys_platform == \"darwin\""

 [[package]]
 name = "atomicwrites"
@ -76,7 +76,6 @@ description = "Atomic file writes."
 category = "dev"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
-marker = "sys_platform == \"win32\""

 [[package]]
 name = "attrs"
@ -87,10 +86,10 @@ optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"

 [package.extras]
-dev = ["coverage (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "zope.interface", "furo", "sphinx", "pre-commit"]
+dev = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "zope.interface", "furo", "sphinx", "pre-commit"]
 docs = ["furo", "sphinx", "zope.interface"]
-tests = ["coverage (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "zope.interface"]
-tests_no_zope = ["coverage (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six"]
+tests = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "zope.interface"]
+tests_no_zope = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six"]

 [[package]]
 name = "babel"
@ -110,7 +109,6 @@ description = "Specifications for callback functions passed in to an API"
 category = "dev"
 optional = false
 python-versions = "*"
-marker = "python_version >= \"3.7\" and python_version < \"4.0\""

 [[package]]
 name = "black"
@ -120,10 +118,6 @@ category = "dev"
 optional = false
 python-versions = ">=3.6"

-[package.extras]
-colorama = ["colorama (>=0.4.3)"]
-d = ["aiohttp (>=3.3.2)", "aiohttp-cors"]
-
 [package.dependencies]
 appdirs = "*"
 click = ">=7.1.2"
@ -134,6 +128,10 @@ toml = ">=0.10.1"
 typed-ast = ">=1.4.0"
 typing-extensions = ">=3.7.4"

+[package.extras]
+colorama = ["colorama (>=0.4.3)"]
+d = ["aiohttp (>=3.3.2)", "aiohttp-cors"]
+
 [[package]]
 name = "certifi"
 version = "2020.12.5"
@ -162,10 +160,9 @@ python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*"
 name = "colorama"
 version = "0.4.4"
 description = "Cross-platform colored terminal text."
-category = "dev"
+category = "main"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*"
-marker = "python_version >= \"3.7\" and python_version < \"4.0\" and sys_platform == \"win32\" or sys_platform == \"win32\""

 [[package]]
 name = "csvkit"
@ -197,7 +194,6 @@ description = "Decorators for Humans"
 category = "dev"
 optional = false
 python-versions = ">=2.6, !=3.0.*, !=3.1.*"
-marker = "python_version >= \"3.7\" and python_version < \"4.0\""

 [[package]]
 name = "et-xmlfile"
@ -238,12 +234,23 @@ python-versions = "*"

 [[package]]
 name = "ipython"
-version = "7.19.0"
+version = "7.21.0"
 description = "IPython: Productive Interactive Computing"
 category = "dev"
 optional = false
 python-versions = ">=3.7"
-marker = "python_version >= \"3.7\" and python_version < \"4.0\""
+
+[package.dependencies]
+appnope = {version = "*", markers = "sys_platform == \"darwin\""}
+backcall = "*"
+colorama = {version = "*", markers = "sys_platform == \"win32\""}
+decorator = "*"
+jedi = ">=0.16"
+pexpect = {version = ">4.3", markers = "sys_platform != \"win32\""}
+pickleshare = "*"
+prompt-toolkit = ">=2.0.0,<3.0.0 || >3.0.0,<3.0.1 || >3.0.1,<3.1.0"
+pygments = "*"
+traitlets = ">=4.2"

 [package.extras]
 all = ["Sphinx (>=1.3)", "ipykernel", "ipyparallel", "ipywidgets", "nbconvert", "nbformat", "nose (>=0.10.1)", "notebook", "numpy (>=1.14)", "pygments", "qtconsole", "requests", "testpath"]
@ -256,19 +263,6 @@ parallel = ["ipyparallel"]
 qtconsole = ["qtconsole"]
 test = ["nose (>=0.10.1)", "requests", "testpath", "pygments", "nbformat", "ipykernel", "numpy (>=1.14)"]

-[package.dependencies]
-appnope = "*"
-backcall = "*"
-colorama = "*"
-decorator = "*"
-jedi = ">=0.10"
-pexpect = ">4.3"
-pickleshare = "*"
-prompt-toolkit = ">=2.0.0,<3.0.0 || >3.0.0,<3.0.1 || >3.0.1,<3.1.0"
-pygments = "*"
-setuptools = ">=18.5"
-traitlets = ">=4.2"
-
 [[package]]
 name = "ipython-genutils"
 version = "0.2.0"
@ -276,7 +270,6 @@ description = "Vestigial utilities from IPython"
 category = "dev"
 optional = false
 python-versions = "*"
-marker = "python_version >= \"3.7\" and python_version < \"4.0\""

 [[package]]
 name = "isodate"
@ -302,14 +295,6 @@ pipfile_deprecated_finder = ["pipreqs", "requirementslib"]
 requirements_deprecated_finder = ["pipreqs", "pip-api"]
 colors = ["colorama (>=0.4.3,<0.5.0)"]

-[[package]]
-name = "jdcal"
-version = "1.4.1"
-description = "Julian dates from proleptic Gregorian and Julian calendars."
-category = "dev"
-optional = false
-python-versions = "*"
-
 [[package]]
 name = "jedi"
 version = "0.18.0"
@ -317,15 +302,14 @@ description = "An autocompletion tool for Python that can be used for text edito
 category = "dev"
 optional = false
 python-versions = ">=3.6"
-marker = "python_version >= \"3.7\" and python_version < \"4.0\""
-
-[package.extras]
-qa = ["flake8 (3.8.3)", "mypy (0.782)"]
-testing = ["Django (<3.1)", "colorama", "docopt", "pytest (<6.0.0)"]

 [package.dependencies]
 parso = ">=0.8.0,<0.9.0"

+[package.extras]
+qa = ["flake8 (==3.8.3)", "mypy (==0.782)"]
+testing = ["Django (<3.1)", "colorama", "docopt", "pytest (<6.0.0)"]
+
 [[package]]
 name = "langid"
 version = "1.1.6"
@ -366,15 +350,15 @@ python-versions = "*"

 [[package]]
 name = "numpy"
-version = "1.19.5"
+version = "1.20.1"
 description = "NumPy is the fundamental package for array computing with Python."
 category = "main"
 optional = false
-python-versions = ">=3.6"
+python-versions = ">=3.7"

 [[package]]
 name = "openpyxl"
-version = "3.0.6"
+version = "3.0.7"
 description = "A Python library to read/write Excel 2010 xlsx/xlsm files"
 category = "dev"
 optional = false
@ -382,11 +366,10 @@ python-versions = ">=3.6,"

 [package.dependencies]
 et-xmlfile = "*"
-jdcal = "*"

 [[package]]
 name = "packaging"
-version = "20.8"
+version = "20.9"
 description = "Core utilities for Python packages"
 category = "dev"
 optional = false
@ -397,20 +380,20 @@ pyparsing = ">=2.0.2"

 [[package]]
 name = "pandas"
-version = "1.2.1"
+version = "1.2.3"
 description = "Powerful data structures for data analysis, time series, and statistics"
 category = "main"
 optional = false
 python-versions = ">=3.7.1"

-[package.extras]
-test = ["pytest (>=5.0.1)", "pytest-xdist", "hypothesis (>=3.58)"]
-
 [package.dependencies]
 numpy = ">=1.16.5"
 python-dateutil = ">=2.7.3"
 pytz = ">=2017.3"

+[package.extras]
+test = ["pytest (>=5.0.1)", "pytest-xdist", "hypothesis (>=3.58)"]
+
 [[package]]
 name = "parsedatetime"
 version = "2.6"
@ -426,10 +409,9 @@ description = "A Python Parser"
 category = "dev"
 optional = false
 python-versions = ">=3.6"
-marker = "python_version >= \"3.7\" and python_version < \"4.0\""

 [package.extras]
-qa = ["flake8 (3.8.3)", "mypy (0.782)"]
+qa = ["flake8 (==3.8.3)", "mypy (==0.782)"]
 testing = ["docopt", "pytest (<6.0.0)"]

 [[package]]
@ -447,7 +429,6 @@ description = "Pexpect allows easy control of interactive console applications."
 category = "dev"
 optional = false
 python-versions = "*"
-marker = "python_version >= \"3.7\" and python_version < \"4.0\" and sys_platform != \"win32\""

 [package.dependencies]
 ptyprocess = ">=0.5"
@ -459,7 +440,6 @@ description = "Tiny 'shelve'-like database with concurrency support"
 category = "dev"
 optional = false
 python-versions = "*"
-marker = "python_version >= \"3.7\" and python_version < \"4.0\""

 [[package]]
 name = "pluggy"
@ -474,12 +454,11 @@ dev = ["pre-commit", "tox"]

 [[package]]
 name = "prompt-toolkit"
-version = "3.0.14"
+version = "3.0.16"
 description = "Library for building powerful interactive command lines in Python"
 category = "dev"
 optional = false
 python-versions = ">=3.6.1"
-marker = "python_version >= \"3.7\" and python_version < \"4.0\""

 [package.dependencies]
 wcwidth = "*"
@ -491,7 +470,6 @@ description = "Run a subprocess in a pseudo terminal"
 category = "dev"
 optional = false
 python-versions = "*"
-marker = "python_version >= \"3.7\" and python_version < \"4.0\" and sys_platform != \"win32\""

 [[package]]
 name = "py"
@ -527,12 +505,19 @@ python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"

 [[package]]
 name = "pygments"
-version = "2.7.4"
+version = "2.8.1"
 description = "Pygments is a syntax highlighting package written in Python."
 category = "dev"
 optional = false
 python-versions = ">=3.5"
-marker = "python_version >= \"3.7\" and python_version < \"4.0\""
+
+[[package]]
+name = "pyicu"
+version = "2.6"
+description = "Python extension wrapping the ICU C++ API"
+category = "dev"
+optional = false
+python-versions = "*"

 [[package]]
 name = "pyparsing"
@ -550,19 +535,19 @@ category = "dev"
 optional = false
 python-versions = ">=3.6"

-[package.extras]
-testing = ["argcomplete", "hypothesis (>=3.56)", "mock", "nose", "requests", "xmlschema"]
-
 [package.dependencies]
-atomicwrites = ">=1.0"
+atomicwrites = {version = ">=1.0", markers = "sys_platform == \"win32\""}
 attrs = ">=19.2.0"
-colorama = "*"
+colorama = {version = "*", markers = "sys_platform == \"win32\""}
 iniconfig = "*"
 packaging = "*"
 pluggy = ">=0.12,<1.0.0a1"
 py = ">=1.8.2"
 toml = "*"

+[package.extras]
+testing = ["argcomplete", "hypothesis (>=3.56)", "mock", "nose", "requests", "xmlschema"]
+
 [[package]]
 name = "pytest-clarity"
 version = "0.3.0a0"
@ -594,15 +579,15 @@ category = "dev"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*"

-[package.extras]
-unidecode = ["Unidecode (>=1.1.1)"]
-
 [package.dependencies]
 text-unidecode = ">=1.3"

+[package.extras]
+unidecode = ["Unidecode (>=1.1.1)"]
+
 [[package]]
 name = "python-stdnum"
-version = "1.15"
+version = "1.16"
 description = "Python module to handle standardized numbers and codes"
 category = "main"
 optional = false
@ -623,7 +608,7 @@ python-versions = "*"

 [[package]]
 name = "pytz"
-version = "2020.5"
+version = "2021.1"
 description = "World timezone definitions, modern and historical"
 category = "main"
 optional = false
@ -645,16 +630,16 @@ category = "main"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*"

-[package.extras]
-security = ["pyOpenSSL (>=0.14)", "cryptography (>=1.3.4)"]
-socks = ["PySocks (>=1.5.6,<1.5.7 || >1.5.7)", "win-inet-pton"]
-
 [package.dependencies]
 certifi = ">=2017.4.17"
 chardet = ">=3.0.2,<5"
 idna = ">=2.5,<3"
 urllib3 = ">=1.21.1,<1.27"

+[package.extras]
+security = ["pyOpenSSL (>=0.14)", "cryptography (>=1.3.4)"]
+socks = ["PySocks (>=1.5.6,!=1.5.7)", "win-inet-pton"]
+
 [[package]]
 name = "requests-cache"
 version = "0.5.2"
@ -674,9 +659,17 @@ category = "main"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*"

+[[package]]
+name = "spdx-license-list"
+version = "0.5.2"
+description = "A simple tool/library for working with SPDX license definitions."
+category = "main"
+optional = false
+python-versions = "*"
+
 [[package]]
 name = "sqlalchemy"
-version = "1.3.22"
+version = "1.3.23"
 description = "Database Abstraction Library"
 category = "dev"
 optional = false
@ -689,10 +682,10 @@ mssql_pyodbc = ["pyodbc"]
 mysql = ["mysqlclient"]
 oracle = ["cx-oracle"]
 postgresql = ["psycopg2"]
-postgresql_pg8000 = ["pg8000"]
+postgresql_pg8000 = ["pg8000 (<1.16.6)"]
 postgresql_psycopg2binary = ["psycopg2-binary"]
 postgresql_psycopg2cffi = ["psycopg2cffi"]
-pymysql = ["pymysql"]
+pymysql = ["pymysql (<1)", "pymysql"]

 [[package]]
 name = "termcolor"
@ -725,14 +718,13 @@ description = "Traitlets Python configuration system"
 category = "dev"
 optional = false
 python-versions = ">=3.7"
-marker = "python_version >= \"3.7\" and python_version < \"4.0\""
-
-[package.extras]
-test = ["pytest"]

 [package.dependencies]
 ipython-genutils = "*"

+[package.extras]
+test = ["pytest"]
+
 [[package]]
 name = "typed-ast"
 version = "1.4.2"
@ -751,7 +743,7 @@ python-versions = "*"

 [[package]]
 name = "urllib3"
-version = "1.26.2"
+version = "1.26.3"
 description = "HTTP library with thread-safe connection pooling, file post, and more."
 category = "main"
 optional = false
@ -760,7 +752,7 @@ python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, <4"
 [package.extras]
 brotli = ["brotlipy (>=0.6.0)"]
 secure = ["pyOpenSSL (>=0.14)", "cryptography (>=1.3.4)", "idna (>=2.0.0)", "certifi", "ipaddress"]
-socks = ["PySocks (>=1.5.6,<1.5.7 || >1.5.7,<2.0)"]
+socks = ["PySocks (>=1.5.6,!=1.5.7,<2.0)"]

 [[package]]
 name = "wcwidth"
@ -769,7 +761,6 @@ description = "Measures the displayed width of unicode strings in a terminal"
 category = "dev"
 optional = false
 python-versions = "*"
-marker = "python_version >= \"3.7\" and python_version < \"4.0\""

 [[package]]
 name = "xlrd"
@ -780,14 +771,13 @@ optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"

 [metadata]
-lock-version = "1.0"
+lock-version = "1.1"
 python-versions = "^3.8"
-content-hash = "63f2c6ef09652c4f8407660ff7b4690c8a07e5501eb8fc8c477f485de5888fcf"
+content-hash = "6a9ee0f26b50f361d7e0e6a2275f0e3174dee1c89fbd460583c4ea3d873857b8"

 [metadata.files]
 agate = [
-    {file = "agate-1.6.1-py2.py3-none-any.whl", hash = "sha256:48d6f80b35611c1ba25a642cbc5b90fcbdeeb2a54711c4a8d062ee2809334d1c"},
-    {file = "agate-1.6.1.tar.gz", hash = "sha256:c93aaa500b439d71e4a5cf088d0006d2ce2c76f1950960c8843114e5f361dfd3"},
+    {file = "agate-1.6.2.tar.gz", hash = "sha256:8dbd4a57a2cffecfa2d8109ef5993ec4be12a8a7c81fbc0c8c79d96d4c4399ed"},
 ]
 agate-dbf = [
    {file = "agate-dbf-0.2.2.tar.gz", hash = "sha256:589682b78c5c03f2dc8511e6e3edb659fb7336cd118e248896bb0b44c2f1917b"},
@ -868,8 +858,8 @@ iniconfig = [
    {file = "iniconfig-1.1.1.tar.gz", hash = "sha256:bc3af051d7d14b2ee5ef9969666def0cd1a000e121eaea580d4a313df4b37f32"},
 ]
 ipython = [
-    {file = "ipython-7.19.0-py3-none-any.whl", hash = "sha256:c987e8178ced651532b3b1ff9965925bfd445c279239697052561a9ab806d28f"},
-    {file = "ipython-7.19.0.tar.gz", hash = "sha256:cbb2ef3d5961d44e6a963b9817d4ea4e1fa2eb589c371a470fed14d8d40cbd6a"},
+    {file = "ipython-7.21.0-py3-none-any.whl", hash = "sha256:34207ffb2f653bced2bc8e3756c1db86e7d93e44ed049daae9814fed66d408ec"},
+    {file = "ipython-7.21.0.tar.gz", hash = "sha256:04323f72d5b85b606330b6d7e2dc8d2683ad46c3905e955aa96ecc7a99388e70"},
 ]
 ipython-genutils = [
    {file = "ipython_genutils-0.2.0-py2.py3-none-any.whl", hash = "sha256:72dd37233799e619666c9f639a9da83c34013a73e8bbc79a7a6348d93c61fab8"},
@ -883,10 +873,6 @@ isort = [
    {file = "isort-5.7.0-py3-none-any.whl", hash = "sha256:fff4f0c04e1825522ce6949973e83110a6e907750cd92d128b0d14aaaadbffdc"},
    {file = "isort-5.7.0.tar.gz", hash = "sha256:c729845434366216d320e936b8ad6f9d681aab72dc7cbc2d51bedc3582f3ad1e"},
 ]
-jdcal = [
-    {file = "jdcal-1.4.1-py2.py3-none-any.whl", hash = "sha256:1abf1305fce18b4e8aa248cf8fe0c56ce2032392bc64bbd61b5dff2a19ec8bba"},
-    {file = "jdcal-1.4.1.tar.gz", hash = "sha256:472872e096eb8df219c23f2689fc336668bdb43d194094b5cc1707e1640acfc8"},
-]
 jedi = [
    {file = "jedi-0.18.0-py2.py3-none-any.whl", hash = "sha256:18456d83f65f400ab0c2d3319e48520420ef43b23a086fdc05dff34132f0fb93"},
    {file = "jedi-0.18.0.tar.gz", hash = "sha256:92550a404bad8afed881a137ec9a461fed49eca661414be45059329614ed0707"},
@ -907,67 +893,56 @@ mypy-extensions = [
    {file = "mypy_extensions-0.4.3.tar.gz", hash = "sha256:2d82818f5bb3e369420cb3c4060a7970edba416647068eb4c5343488a6c604a8"},
 ]
 numpy = [
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-    {file = "numpy-1.19.5-cp36-cp36m-manylinux1_i686.whl", hash = "sha256:aeb9ed923be74e659984e321f609b9ba54a48354bfd168d21a2b072ed1e833ea"},
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@ -1198,8 +1180,8 @@ typing-extensions = [
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+    {file = "urllib3-1.26.3.tar.gz", hash = "sha256:de3eedaad74a2683334e282005cd8d7f22f4d55fa690a2a1020a416cb0a47e73"},
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--- a/pyproject.toml
+++ b/pyproject.toml
@ -1,12 +1,15 @@
 [tool.poetry]
 name = "csv-metadata-quality"
-version = "0.4.3"
+version = "0.4.6"
 description="A simple, but opinionated CSV quality checking and fixing pipeline for CSVs in the DSpace ecosystem."
 authors = ["Alan Orth <alan.orth@gmail.com>"]
 license="GPL-3.0-only"
 repository = "https://github.com/ilri/csv-metadata-quality"
 homepage = "https://github.com/ilri/csv-metadata-quality"

+[tool.poetry.scripts]
+csv-metadata-quality = 'csv_metadata_quality.__main__:main'
+
 [tool.poetry.dependencies]
 python = "^3.8"
 pandas = "^1.0.4"
@ -16,6 +19,8 @@ requests = "^2.23.0"
 requests-cache = "^0.5.2"
 pycountry = "^19.8.18"
 langid = "^1.1.6"
+colorama = "^0.4.4"
+spdx-license-list = "^0.5.2"

 [tool.poetry.dev-dependencies]
 pytest = "^6.1.1"
--- a/requirements-dev.txt
+++ b/requirements-dev.txt
@ -1,71 +1,72 @@
-agate==1.6.1
 agate-dbf==0.2.2
 agate-excel==0.2.3
 agate-sql==0.5.5
-appdirs==1.4.4
+agate==1.6.2
+appdirs==1.4.4; python_version >= "3.6"
 appnope==0.1.2; python_version >= "3.7" and python_version < "4.0" and sys_platform == "darwin"
-atomicwrites==1.4.0; sys_platform == "win32"
-attrs==20.3.0
-babel==2.9.0
+atomicwrites==1.4.0; python_version >= "3.6" and python_full_version < "3.0.0" and sys_platform == "win32" and (python_version >= "3.6" and python_full_version < "3.0.0" or python_full_version >= "3.4.0" and python_version >= "3.6") or sys_platform == "win32" and python_version >= "3.6" and python_full_version >= "3.4.0" and (python_version >= "3.6" and python_full_version < "3.0.0" or python_full_version >= "3.4.0" and python_version >= "3.6")
+attrs==20.3.0; python_version >= "3.6" and python_full_version < "3.0.0" or python_full_version >= "3.4.0" and python_version >= "3.6"
+babel==2.9.0; python_version >= "2.7" and python_full_version < "3.0.0" or python_full_version >= "3.4.0"
 backcall==0.2.0; python_version >= "3.7" and python_version < "4.0"
-black==20.8b1
-certifi==2020.12.5
-chardet==4.0.0
-click==7.1.2
-colorama==0.4.4; python_version >= "3.7" and python_version < "4.0" and sys_platform == "win32" or sys_platform == "win32"
+black==20.8b1; python_version >= "3.6"
+certifi==2020.12.5; python_version >= "2.7" and python_full_version < "3.0.0" or python_full_version >= "3.5.0"
+chardet==4.0.0; python_version >= "2.7" and python_full_version < "3.0.0" or python_full_version >= "3.5.0"
+click==7.1.2; python_version >= "3.6" and python_full_version < "3.0.0" or python_full_version >= "3.5.0" and python_version >= "3.6"
+colorama==0.4.4; (python_version >= "2.7" and python_full_version < "3.0.0") or (python_full_version >= "3.5.0")
 csvkit==1.0.5
 dbfread==2.0.7
-decorator==4.4.2; python_version >= "3.7" and python_version < "4.0"
-et-xmlfile==1.0.1
-flake8==3.8.4
-idna==2.10
-iniconfig==1.1.1
-ipython==7.19.0; python_version >= "3.7" and python_version < "4.0"
+decorator==4.4.2; python_version >= "3.7" and python_full_version < "3.0.0" and python_version < "4.0" or python_version >= "3.7" and python_version < "4.0" and python_full_version >= "3.2.0"
+et-xmlfile==1.0.1; python_version >= "3.6"
+flake8==3.8.4; (python_version >= "2.7" and python_full_version < "3.0.0") or (python_full_version >= "3.4.0")
+idna==2.10; python_version >= "2.7" and python_full_version < "3.0.0" or python_full_version >= "3.5.0"
+iniconfig==1.1.1; python_version >= "3.6" and python_full_version < "3.0.0" or python_full_version >= "3.4.0" and python_version >= "3.6"
 ipython-genutils==0.2.0; python_version >= "3.7" and python_version < "4.0"
+ipython==7.21.0; python_version >= "3.7" and python_version < "4.0"
 isodate==0.6.0
-isort==5.7.0
-jdcal==1.4.1
+isort==5.7.0; python_version >= "3.6" and python_version < "4.0"
 jedi==0.18.0; python_version >= "3.7" and python_version < "4.0"
 langid==1.1.6
 leather==0.3.3
-mccabe==0.6.1
-mypy-extensions==0.4.3
-numpy==1.19.5
-openpyxl==3.0.6
-packaging==20.8
-pandas==1.2.1
+mccabe==0.6.1; python_version >= "2.7" and python_full_version < "3.0.0" or python_full_version >= "3.4.0"
+mypy-extensions==0.4.3; python_version >= "3.6"
+numpy==1.20.1; python_version >= "3.7" and python_full_version >= "3.7.1"
+openpyxl==3.0.7; python_version >= "3.6"
+packaging==20.9; python_version >= "3.6" and python_full_version < "3.0.0" or python_full_version >= "3.4.0" and python_version >= "3.6"
+pandas==1.2.3; python_full_version >= "3.7.1"
 parsedatetime==2.6
 parso==0.8.1; python_version >= "3.7" and python_version < "4.0"
-pathspec==0.8.1
+pathspec==0.8.1; python_version >= "3.6" and python_full_version < "3.0.0" or python_full_version >= "3.5.0" and python_version >= "3.6"
 pexpect==4.8.0; python_version >= "3.7" and python_version < "4.0" and sys_platform != "win32"
 pickleshare==0.7.5; python_version >= "3.7" and python_version < "4.0"
-pluggy==0.13.1
-prompt-toolkit==3.0.14; python_version >= "3.7" and python_version < "4.0"
+pluggy==0.13.1; python_version >= "3.6" and python_full_version < "3.0.0" or python_full_version >= "3.4.0" and python_version >= "3.6"
+prompt-toolkit==3.0.16; python_version >= "3.7" and python_version < "4.0" and python_full_version >= "3.6.1"
 ptyprocess==0.7.0; python_version >= "3.7" and python_version < "4.0" and sys_platform != "win32"
-py==1.10.0
-pycodestyle==2.6.0
+py==1.10.0; python_version >= "3.6" and python_full_version < "3.0.0" or python_full_version >= "3.4.0" and python_version >= "3.6"
+pycodestyle==2.6.0; python_version >= "2.7" and python_full_version < "3.0.0" or python_full_version >= "3.4.0"
 pycountry==19.8.18
-pyflakes==2.2.0
-pygments==2.7.4; python_version >= "3.7" and python_version < "4.0"
-pyparsing==2.4.7
-pytest==6.2.2
-pytest-clarity==0.3.0a0
-python-dateutil==2.8.1
-python-slugify==4.0.1
-python-stdnum==1.15
+pyflakes==2.2.0; python_version >= "2.7" and python_full_version < "3.0.0" or python_full_version >= "3.4.0"
+pygments==2.8.1; python_version >= "3.7" and python_version < "4.0"
+pyicu==2.6
+pyparsing==2.4.7; python_version >= "3.6" and python_full_version < "3.0.0" or python_full_version >= "3.4.0" and python_version >= "3.6"
+pytest-clarity==0.3.0a0; (python_version >= "2.7" and python_full_version < "3.0.0") or (python_full_version >= "3.4.0")
+pytest==6.2.2; python_version >= "3.6"
+python-dateutil==2.8.1; python_full_version >= "3.7.1"
+python-slugify==4.0.1; python_version >= "2.7" and python_full_version < "3.0.0" or python_full_version >= "3.5.0"
+python-stdnum==1.16
 pytimeparse==1.1.8
-pytz==2020.5
-regex==2020.11.13
-requests==2.25.1
+pytz==2021.1; python_full_version >= "3.7.1"
+regex==2020.11.13; python_version >= "3.6"
 requests-cache==0.5.2
-six==1.15.0
-sqlalchemy==1.3.22
-termcolor==1.1.0
-text-unidecode==1.3
-toml==0.10.2
+requests==2.25.1; (python_version >= "2.7" and python_full_version < "3.0.0") or (python_full_version >= "3.5.0")
+six==1.15.0; python_full_version >= "3.7.1"
+spdx-license-list==0.5.2
+sqlalchemy==1.3.23; python_version >= "2.7" and python_full_version < "3.0.0" or python_full_version >= "3.4.0"
+termcolor==1.1.0; python_version >= "2.7" and python_full_version < "3.0.0" or python_full_version >= "3.4.0"
+text-unidecode==1.3; python_version >= "2.7" and python_full_version < "3.0.0" or python_full_version >= "3.5.0"
+toml==0.10.2; python_version >= "3.6" and python_full_version < "3.0.0" or python_full_version >= "3.4.0" and python_version >= "3.6"
 traitlets==5.0.5; python_version >= "3.7" and python_version < "4.0"
-typed-ast==1.4.2
-typing-extensions==3.7.4.3
-urllib3==1.26.2
-wcwidth==0.2.5; python_version >= "3.7" and python_version < "4.0"
-xlrd==1.2.0
+typed-ast==1.4.2; python_version >= "3.6"
+typing-extensions==3.7.4.3; python_version >= "3.6"
+urllib3==1.26.3; python_version >= "2.7" and python_full_version < "3.0.0" or python_full_version >= "3.5.0" and python_version < "4"
+wcwidth==0.2.5; python_version >= "3.7" and python_version < "4.0" and python_full_version >= "3.6.1"
+xlrd==1.2.0; (python_version >= "2.7" and python_full_version < "3.0.0") or (python_full_version >= "3.4.0")
--- a/requirements.txt
+++ b/requirements.txt
@ -1,15 +1,17 @@
-certifi==2020.12.5
-chardet==4.0.0
-idna==2.10
+certifi==2020.12.5; python_version >= "2.7" and python_full_version < "3.0.0" or python_full_version >= "3.5.0"
+chardet==4.0.0; python_version >= "2.7" and python_full_version < "3.0.0" or python_full_version >= "3.5.0"
+colorama==0.4.4; (python_version >= "2.7" and python_full_version < "3.0.0") or (python_full_version >= "3.5.0")
+idna==2.10; python_version >= "2.7" and python_full_version < "3.0.0" or python_full_version >= "3.5.0"
 langid==1.1.6
-numpy==1.19.5
-pandas==1.2.1
+numpy==1.20.1; python_version >= "3.7" and python_full_version >= "3.7.1"
+pandas==1.2.3; python_full_version >= "3.7.1"
 pycountry==19.8.18
-python-dateutil==2.8.1
-python-stdnum==1.15
-pytz==2020.5
-requests==2.25.1
+python-dateutil==2.8.1; python_full_version >= "3.7.1"
+python-stdnum==1.16
+pytz==2021.1; python_full_version >= "3.7.1"
 requests-cache==0.5.2
-six==1.15.0
-urllib3==1.26.2
-xlrd==1.2.0
+requests==2.25.1; (python_version >= "2.7" and python_full_version < "3.0.0") or (python_full_version >= "3.5.0")
+six==1.15.0; python_full_version >= "3.7.1"
+spdx-license-list==0.5.2
+urllib3==1.26.3; python_version >= "2.7" and python_full_version < "3.0.0" or python_full_version >= "3.5.0" and python_version < "4"
+xlrd==1.2.0; (python_version >= "2.7" and python_full_version < "3.0.0") or (python_full_version >= "3.4.0")
--- a/setup.py
+++ b/setup.py
@ -14,7 +14,7 @@ install_requires = [

 setuptools.setup(
    name="csv-metadata-quality",
-    version="0.4.3",
+    version="0.4.6",
    author="Alan Orth",
    author_email="aorth@mjanja.ch",
    description="A simple, but opinionated CSV quality checking and fixing pipeline for CSVs in the DSpace ecosystem.",
--- a/tests/test_check.py
+++ b/tests/test_check.py
@ -1,4 +1,5 @@
 import pandas as pd
+from colorama import Fore

 import csv_metadata_quality.check as check
 import csv_metadata_quality.experimental as experimental
@ -12,7 +13,7 @@ def test_check_invalid_issn(capsys):
    check.issn(value)

    captured = capsys.readouterr()
-    assert captured.out == f"Invalid ISSN: {value}\n"
+    assert captured.out == f"{Fore.RED}Invalid ISSN: {Fore.RESET}{value}\n"


 def test_check_valid_issn():
@ -33,7 +34,7 @@ def test_check_invalid_isbn(capsys):
    check.isbn(value)

    captured = capsys.readouterr()
-    assert captured.out == f"Invalid ISBN: {value}\n"
+    assert captured.out == f"{Fore.RED}Invalid ISBN: {Fore.RESET}{value}\n"


 def test_check_valid_isbn():
@ -56,7 +57,10 @@ def test_check_invalid_separators(capsys):
    check.separators(value, field_name)

    captured = capsys.readouterr()
-    assert captured.out == f"Invalid multi-value separator ({field_name}): {value}\n"
+    assert (
+        captured.out
+        == f"{Fore.RED}Invalid multi-value separator ({field_name}): {Fore.RESET}{value}\n"
+    )


 def test_check_unnecessary_separators(capsys):
@ -70,7 +74,8 @@ def test_check_unnecessary_separators(capsys):

    captured = capsys.readouterr()
    assert (
-        captured.out == f"Unnecessary multi-value separator ({field_name}): {field}\n"
+        captured.out
+        == f"{Fore.RED}Unnecessary multi-value separator ({field_name}): {Fore.RESET}{field}\n"
    )


@ -96,7 +101,7 @@ def test_check_missing_date(capsys):
    check.date(value, field_name)

    captured = capsys.readouterr()
-    assert captured.out == f"Missing date ({field_name}).\n"
+    assert captured.out == f"{Fore.RED}Missing date ({field_name}).{Fore.RESET}\n"


 def test_check_multiple_dates(capsys):
@ -109,7 +114,10 @@ def test_check_multiple_dates(capsys):
    check.date(value, field_name)

    captured = capsys.readouterr()
-    assert captured.out == f"Multiple dates not allowed ({field_name}): {value}\n"
+    assert (
+        captured.out
+        == f"{Fore.RED}Multiple dates not allowed ({field_name}): {Fore.RESET}{value}\n"
+    )


 def test_check_invalid_date(capsys):
@ -122,7 +130,9 @@ def test_check_invalid_date(capsys):
    check.date(value, field_name)

    captured = capsys.readouterr()
-    assert captured.out == f"Invalid date ({field_name}): {value}\n"
+    assert (
+        captured.out == f"{Fore.RED}Invalid date ({field_name}): {Fore.RESET}{value}\n"
+    )


 def test_check_valid_date():
@ -147,7 +157,10 @@ def test_check_suspicious_characters(capsys):
    check.suspicious_characters(value, field_name)

    captured = capsys.readouterr()
-    assert captured.out == f"Suspicious character ({field_name}): ˆt\n"
+    assert (
+        captured.out
+        == f"{Fore.YELLOW}Suspicious character ({field_name}): {Fore.RESET}ˆt\n"
+    )


 def test_check_valid_iso639_1_language():
@ -178,7 +191,9 @@ def test_check_invalid_iso639_1_language(capsys):
    check.language(value)

    captured = capsys.readouterr()
-    assert captured.out == f"Invalid ISO 639-1 language: {value}\n"
+    assert (
+        captured.out == f"{Fore.RED}Invalid ISO 639-1 language: {Fore.RESET}{value}\n"
+    )


 def test_check_invalid_iso639_3_language(capsys):
@ -189,7 +204,9 @@ def test_check_invalid_iso639_3_language(capsys):
    check.language(value)

    captured = capsys.readouterr()
-    assert captured.out == f"Invalid ISO 639-3 language: {value}\n"
+    assert (
+        captured.out == f"{Fore.RED}Invalid ISO 639-3 language: {Fore.RESET}{value}\n"
+    )


 def test_check_invalid_language(capsys):
@ -200,26 +217,29 @@ def test_check_invalid_language(capsys):
    check.language(value)

    captured = capsys.readouterr()
-    assert captured.out == f"Invalid language: {value}\n"
+    assert captured.out == f"{Fore.RED}Invalid language: {Fore.RESET}{value}\n"


 def test_check_invalid_agrovoc(capsys):
    """Test invalid AGROVOC subject."""

    value = "FOREST"
-    field_name = "dc.subject"
+    field_name = "dcterms.subject"

    check.agrovoc(value, field_name)

    captured = capsys.readouterr()
-    assert captured.out == f"Invalid AGROVOC ({field_name}): {value}\n"
+    assert (
+        captured.out
+        == f"{Fore.RED}Invalid AGROVOC ({field_name}): {Fore.RESET}{value}\n"
+    )


 def test_check_valid_agrovoc():
    """Test valid AGROVOC subject."""

    value = "FORESTS"
-    field_name = "dc.subject"
+    field_name = "dcterms.subject"

    result = check.agrovoc(value, field_name)

@ -234,7 +254,10 @@ def test_check_uncommon_filename_extension(capsys):
    check.filename_extension(value)

    captured = capsys.readouterr()
-    assert captured.out == f"Filename with uncommon extension: {value}\n"
+    assert (
+        captured.out
+        == f"{Fore.YELLOW}Filename with uncommon extension: {Fore.RESET}{value}\n"
+    )


 def test_check_common_filename_extension():
@ -262,7 +285,7 @@ def test_check_incorrect_iso_639_1_language(capsys):
    captured = capsys.readouterr()
    assert (
        captured.out
-        == f"Possibly incorrect language {language} (detected en): {title}\n"
+        == f"{Fore.YELLOW}Possibly incorrect language {language} (detected en): {Fore.RESET}{title}\n"
    )


@ -281,7 +304,7 @@ def test_check_incorrect_iso_639_3_language(capsys):
    captured = capsys.readouterr()
    assert (
        captured.out
-        == f"Possibly incorrect language {language} (detected eng): {title}\n"
+        == f"{Fore.YELLOW}Possibly incorrect language {language} (detected eng): {Fore.RESET}{title}\n"
    )


@ -313,3 +336,27 @@ def test_check_correct_iso_639_3_language():
    result = experimental.correct_language(series)

    assert result == language
+
+
+def test_check_valid_spdx_license_identifier():
+    """Test valid SPDX license identifier."""
+
+    license = "CC-BY-SA-4.0"
+
+    result = check.spdx_license_identifier(license)
+
+    assert result == license
+
+
+def test_check_invalid_spdx_license_identifier(capsys):
+    """Test invalid SPDX license identifier."""
+
+    license = "CC-BY-SA"
+
+    result = check.spdx_license_identifier(license)
+
+    captured = capsys.readouterr()
+    assert (
+        captured.out
+        == f"{Fore.YELLOW}Non-SPDX license identifier: {Fore.RESET}{license}\n"
+    )
Author	SHA1	Message	Date
Alan Orth	1554cfd5c9	Version 0.4.6	2021-03-11 12:14:54 +02:00
Alan Orth	00b8faad6d	CHANGELOG.md: Fix headers	2021-03-11 12:13:22 +02:00
Alan Orth	b19d81abdd	.drone.yml: We need some stuff to build pyicu now All checks were successful continuous-integration/drone/push Build is passing Details	2021-03-11 12:07:28 +02:00
Alan Orth	a0ea829f5c	csv_metadata_quality/fix.py: Fixes should be green	2021-03-11 11:47:24 +02:00
Alan Orth	0089efa914	tests/test_check.py: Use dcterms.subject instead of dc.subject Trying to move some old DC fields to DCTERMS.	2021-03-11 11:45:25 +02:00
Alan Orth	3dbe656f9f	Update requirements Some checks failed continuous-integration/drone/push Build is failing Details Generated with poetry export: $ poetry export --without-hashes -f requirements.txt > requirements.txt $ poetry export --without-hashes --dev -f requirements.txt > requirements-dev.txt I am trying `--without-hashes` to work around an error on pip install when running in CI: ERROR: In --require-hashes mode, all requirements must have their versions pinned with ==.	2021-03-11 11:11:19 +02:00
Alan Orth	7ad821dcad	CHANGELOG.md: Add note about poetry dependencies	2021-03-11 11:10:27 +02:00
Alan Orth	cd876c4fb3	poetry.lock: Run poetry update	2021-03-11 11:10:02 +02:00
Alan Orth	d88ea56488	csv_metadata_quality/check.py: Move all imports to top of file PEP8 recommends keeping imports at the top of the file. Also, I had to re-work the issn/isbn so they didn't conflict with the functions in check.py (flake8 warned about them being redefined). Imports sorted with isort. See: https://www.python.org/dev/peps/pep-0008/#imports	2021-03-11 10:52:20 +02:00
Alan Orth	e0e3ca6c58	CHANGELOG.md: Add notes about DCTERMS in data/test.csv	2021-03-11 10:50:52 +02:00
Alan Orth	abae8ca4fb	data/test.csv: Move some DC fields to DCTERMS The original Dublin Core elements set was superceded by DCTERMS in 2008 and we have started using them in our DSpace repository so I think it's good to update them in our test data. Old DC fields are still checked and fixed in this tool, though. It's worth nothing that currently supported DSpace versions (4, 5, and 6) all have hard-coded a few fields like dc.title internally so we can't migrate those to their DCTERMS counterparts just yet.	2021-03-11 10:49:05 +02:00
Alan Orth	d7d4d4efca	CHANGELOG.md: Add note about SPDX license identifiers	2021-03-11 10:37:27 +02:00
Alan Orth	5318953150	tests/test_check.py: Add tests for licenses	2021-03-11 10:36:26 +02:00
Alan Orth	3b17914002	data/test.csv: Add invalid SPDX license Now we are checking dcterms.license against the list of SPDX license identifiers using https://pypi.org/project/spdx-license-list/.	2021-03-11 10:34:58 +02:00
Alan Orth	6e4b0e5c1b	Add validation of SPDX license identifiers Currently this only checks the dcterms.license field and the result will only be a warning.	2021-03-11 10:33:16 +02:00
Alan Orth	b16fa9121f	pyproject.toml: Add csv-metadata-quality as a script All checks were successful continuous-integration/drone/push Build is passing Details For some reason I stopped having csv-metadata-quality available in my poetry environment after install. It seems I need to add it as a poetry tool script? I had already done this in setup.py years ago, which works for regular python setup.py installs, but hadn't needed to do it in poetry for a year or more that I've been using it, until now.	2021-03-08 09:50:05 +02:00
Alan Orth	202bda862a	Bump version to 0.4.5 All checks were successful continuous-integration/drone/push Build is passing Details	2021-03-04 21:38:10 +02:00
Alan Orth	7479310ac0	setup.py: Bump version to 0.4.4 I missed to increase this when I actually released version 0.4.4 so I will do it in a separate commit now before I bump the version to 0.4.5.	2021-03-04 21:35:08 +02:00
Alan Orth	98a91bc9c2	Update requirements Generated with poetry export: $ poetry export --without-hashes -f requirements.txt > requirements.txt $ poetry export --without-hashes --dev -f requirements.txt > requirements-dev.txt I am trying `--without-hashes` to work around an error on pip install when running in CI: ERROR: In --require-hashes mode, all requirements must have their versions pinned with ==.	2021-03-04 21:33:33 +02:00
Alan Orth	fc5bedcc5c	CHANGELOG.md: Add poetry update	2021-03-04 21:32:46 +02:00
Alan Orth	44d12d771a	poetry.lock: Run poetry update	2021-03-04 21:32:21 +02:00
Alan Orth	4a7000e975	README.md: Add more ideas to do	2021-03-04 21:26:53 +02:00
Alan Orth	27b2d81ca8	CHANGELOG.md: Add note about dcterms.issued All checks were successful continuous-integration/drone/push Build is passing Details	2021-02-28 15:14:39 +02:00
Alan Orth	91ebd0f606	README.md: Update TODOs A few of these date things have been addressed.	2021-02-28 15:13:36 +02:00
Alan Orth	dd2cfae047	csv_metadata_quality/app.py: Match dcterms.issued for dates We used to only check fields that had "date" in their name because we were using DSpace's default dc.date.* fields. Now we are using dcterms.issued so I will add that one as well.	2021-02-28 15:11:06 +02:00
Alan Orth	d76e72532a	Move unreleased changes to v0.4.4 All checks were successful continuous-integration/drone/push Build is passing Details	2021-02-21 13:25:22 +02:00
Alan Orth	13980d2dde	CHANGELOG.md: Add note about colored output	2021-02-21 13:12:26 +02:00
Alan Orth	9aaaa62461	Update requirements All checks were successful continuous-integration/drone/push Build is passing Details Generated with poetry export: $ poetry export --without-hashes -f requirements.txt > requirements.txt $ poetry export --without-hashes --dev -f requirements.txt > requirements-dev.txt I am trying `--without-hashes` to work around an error on pip install when running in CI: ERROR: In --require-hashes mode, all requirements must have their versions pinned with ==.	2021-02-21 13:10:52 +02:00
Alan Orth	a7fc5a246c	Colorize output Some checks failed continuous-integration/drone/push Build is failing Details Messages will be colorized: - Red for errors - Yellow for warnings or information - Green for fixes	2021-02-21 13:01:25 +02:00
Alan Orth	7fb8acb866	Add colorama for colored output Red for errors, yellow for warnings or information, and green for fixes.	2021-02-21 13:00:31 +02:00
Alan Orth	9f5d2c2c4f	poetry.lock: Run poetry update All checks were successful continuous-integration/drone/push Build is passing Details	2021-02-15 15:13:12 +02:00
Alan Orth	202abf140c	CHANGELOG.md: Add note about poetry All checks were successful continuous-integration/drone/push Build is passing Details	2021-02-04 21:48:12 +02:00
Alan Orth	0cd6d3dfe6	Update requirements Generated with poetry export: $ poetry export --without-hashes -f requirements.txt > requirements.txt $ poetry export --without-hashes --dev -f requirements.txt > requirements-dev.txt I am trying `--without-hashes` to work around an error on pip install when running in CI: ERROR: In --require-hashes mode, all requirements must have their versions pinned with ==.	2021-02-04 21:46:49 +02:00
Alan Orth	a458beac55	poetry.lock: Run poetry update	2021-02-04 21:45:30 +02:00
Alan Orth	e62ecb0a8f	CHANGELOG.md: Add note about new date format	2021-02-04 21:43:44 +02:00
Alan Orth	de92f32ab6	csv_metadata_quality/check.py: More date formats We should also allow ISO 8601 extended in combined date and time format. DSpace does not have a problem with dates in this format and I have found some metadata that uses this date format. For example: 2020-08-31T11:04:56Z See: https://en.wikipedia.org/wiki/ISO_8601	2021-02-04 21:39:14 +02:00
Alan Orth	dbbbc0944a	README.md: Add handle to citation All checks were successful continuous-integration/drone/push Build is passing Details	2021-01-27 10:33:37 +02:00
Alan Orth	d17bf3033c	README.md: Add citation	2021-01-27 10:32:26 +02:00
Alan Orth	2ec52f1b73	README.md: Update description All checks were successful continuous-integration/drone/push Build is passing Details	2021-01-26 15:43:41 +02:00
Alan Orth	aa1abf15a7	README.md: Adjust title	2021-01-26 15:35:21 +02:00