Move unreleased changes to v0.4.4

CHANGELOG.md: Add note about colored output
Update requirements
2026-01-08 05:13:31 +01:00 · 2021-02-21 13:25:22 +02:00 · 2021-02-21 13:12:26 +02:00 · 2021-02-21 13:10:52 +02:00 · 2021-02-21 13:01:25 +02:00 · 2021-02-21 13:00:31 +02:00
13 changed files with 363 additions and 675 deletions
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -4,13 +4,25 @@ All notable changes to this project will be documented in this file.
 The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/),
 and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).

-## Unreleased
+## [0.4.4] - 2021-02-21
+### Added
+- Accept dates formatted in ISO 8601 extended with combined date and time, for
+example: 2020-08-31T11:04:56Z
+- Colorized output: red for errors, yellow for warnings and information, green
+for changes
+
+### Updated
+- Run `poetry update` to update project dependencies
+
+## [0.4.3] - 2021-01-26
 ### Changed
 - Reformat with black
 - Requires Python 3.7+ for pandas 1.2.0

 ### Updated
 - Run `poetry update`
+- Expand check/fix for multi-value separators to include metadata with invalid
+separators at the end, for example "Kenya||Tanzania||"

 ## [0.4.2] - 2020-07-06
 ### Changed
--- a/README.md
+++ b/README.md
@@ -1,8 +1,12 @@
-# CSV Metadata Quality ![GitHub Actions](https://github.com/ilri/csv-metadata-quality/workflows/Build%20and%20Test/badge.svg) [![builds.sr.ht status](https://builds.sr.ht/~alanorth/csv-metadata-quality.svg)](https://builds.sr.ht/~alanorth/csv-metadata-quality?)
-A simple, but opinionated metadata quality checker and fixer designed to work with CSVs in the DSpace ecosystem (though it could theoretically work on any CSV that uses Dublin Core fields as columns). The implementation is essentially a pipeline of checks and fixes that begins with splitting multi-value fields on the standard DSpace "||" separator, trimming leading/trailing whitespace, and then proceeding to more specialized cases like ISSNs, ISBNs, languages, etc.
+# DSpace CSV Metadata Quality Checker ![GitHub Actions](https://github.com/ilri/csv-metadata-quality/workflows/Build%20and%20Test/badge.svg) [![Build Status](https://ci.mjanja.ch/api/badges/alanorth/csv-metadata-quality/status.svg)](https://ci.mjanja.ch/alanorth/csv-metadata-quality)
+A simple, but opinionated metadata quality checker and fixer designed to work with CSVs in the DSpace ecosystem (though it could theoretically work on any CSV that uses Dublin Core fields as columns). The implementation is essentially a pipeline of checks and fixes that begins with splitting multi-value fields on the standard DSpace "||" separator, trimming leading/trailing whitespace, and then proceeding to more specialized cases like ISSNs, ISBNs, languages, unnecessary Unicode, AGROVOC terms, etc.

 Requires Python 3.7 or greater (3.8 recommended). CSV and Excel support comes from the [Pandas](https://pandas.pydata.org/) library, though your mileage may vary with Excel because this is much less tested.

+If you use the DSpace CSV metadata quality checker please cite:
+
+*Orth, A. 2019. DSpace CSV metadata quality checker. Nairobi, Kenya: ILRI. https://hdl.handle.net/10568/110997.*
+
 ## Functionality

 - Validate dates, ISSNs, ISBNs, and multi-value separators ("||")
--- a/csv_metadata_quality/app.py
+++ b/csv_metadata_quality/app.py
@@ -4,6 +4,7 @@ import signal
 import sys

 import pandas as pd
+from colorama import Fore

 import csv_metadata_quality.check as check
 import csv_metadata_quality.experimental as experimental
@@ -77,7 +78,7 @@ def run(argv):
                if column == exclude and skip is False:
                    skip = True
            if skip:
-                print(f"Skipping {column}")
+                print(f"{Fore.YELLOW}Skipping {Fore.RESET}{column}")

                continue

--- a/csv_metadata_quality/check.py
+++ b/csv_metadata_quality/check.py
@@ -3,6 +3,7 @@ from datetime import datetime, timedelta
 import pandas as pd
 import requests
 import requests_cache
+from colorama import Fore
 from pycountry import languages


@@ -26,7 +27,7 @@ def issn(field):
    for value in field.split("||"):

        if not issn.is_valid(value):
-            print(f"Invalid ISSN: {value}")
+            print(f"{Fore.RED}Invalid ISSN: {Fore.RESET}{value}")

    return field

@@ -51,7 +52,7 @@ def isbn(field):
    for value in field.split("||"):

        if not isbn.is_valid(value):
-            print(f"Invalid ISBN: {value}")
+            print(f"{Fore.RED}Invalid ISBN: {Fore.RESET}{value}")

    return field

@@ -76,7 +77,9 @@ def separators(field, field_name):
    for value in field.split("||"):
        # Check if the current value is blank
        if value == "":
-            print(f"Unnecessary multi-value separator ({field_name}): {field}")
+            print(
+                f"{Fore.RED}Unnecessary multi-value separator ({field_name}): {Fore.RESET}{field}"
+            )

            continue

@@ -85,7 +88,9 @@ def separators(field, field_name):

        # Check if there was a match
        if match:
-            print(f"Invalid multi-value separator ({field_name}): {field}")
+            print(
+                f"{Fore.RED}Invalid multi-value separator ({field_name}): {Fore.RESET}{field}"
+            )

    return field

@@ -102,7 +107,7 @@ def date(field, field_name):
    """

    if pd.isna(field):
-        print(f"Missing date ({field_name}).")
+        print(f"{Fore.RED}Missing date ({field_name}).{Fore.RESET}")

        return

@@ -111,7 +116,9 @@ def date(field, field_name):

    # We don't allow multi-value date fields
    if len(multiple_dates) > 1:
-        print(f"Multiple dates not allowed ({field_name}): {field}")
+        print(
+            f"{Fore.RED}Multiple dates not allowed ({field_name}): {Fore.RESET}{field}"
+        )

        return field

@@ -137,7 +144,15 @@ def date(field, field_name):

        return field
    except ValueError:
-        print(f"Invalid date ({field_name}): {field}")
+        pass
+
+    try:
+        # Check if date is valid YYYY-MM-DDTHH:MM:SSZ format
+        datetime.strptime(field, "%Y-%m-%dT%H:%M:%SZ")
+
+        return field
+    except ValueError:
+        print(f"{Fore.RED}Invalid date ({field_name}): {Fore.RESET}{field}")

        return field

@@ -170,9 +185,7 @@ def suspicious_characters(field, field_name):
            # character and spanning enough of the rest to give a preview,
            # but not too much to cause the line to break in terminals with
            # a default of 80 characters width.
-            suspicious_character_msg = (
-                f"Suspicious character ({field_name}): {field_subset}"
-            )
+            suspicious_character_msg = f"{Fore.YELLOW}Suspicious character ({field_name}): {Fore.RESET}{field_subset}"
            print(f"{suspicious_character_msg:1.80}")

    return field
@@ -197,16 +210,16 @@ def language(field):
        # can check it against ISO 639-1 or ISO 639-3 accordingly.
        if len(value) == 2:
            if not languages.get(alpha_2=value):
-                print(f"Invalid ISO 639-1 language: {value}")
+                print(f"{Fore.RED}Invalid ISO 639-1 language: {Fore.RESET}{value}")

                pass
        elif len(value) == 3:
            if not languages.get(alpha_3=value):
-                print(f"Invalid ISO 639-3 language: {value}")
+                print(f"{Fore.RED}Invalid ISO 639-3 language: {Fore.RESET}{value}")

                pass
        else:
-            print(f"Invalid language: {value}")
+            print(f"{Fore.RED}Invalid language: {Fore.RESET}{value}")

    return field

@@ -248,7 +261,7 @@ def agrovoc(field, field_name):

            # check if there are any results
            if len(data["results"]) == 0:
-                print(f"Invalid AGROVOC ({field_name}): {value}")
+                print(f"{Fore.RED}Invalid AGROVOC ({field_name}): {Fore.RESET}{value}")

    return field

@@ -301,6 +314,6 @@ def filename_extension(field):
                break

        if filename_extension_match is False:
-            print(f"Filename with uncommon extension: {value}")
+            print(f"{Fore.YELLOW}Filename with uncommon extension: {Fore.RESET}{value}")

    return field
--- a/csv_metadata_quality/experimental.py
+++ b/csv_metadata_quality/experimental.py
@@ -1,4 +1,5 @@
 import pandas as pd
+from colorama import Fore


 def correct_language(row):
@@ -10,10 +11,11 @@ def correct_language(row):
    language and returns the value in the language field if it does match.
    """

-    from pycountry import languages
-    import langid
    import re

+    import langid
+    from pycountry import languages
+
    # Initialize some variables at global scope so that we can set them in the
    # loop scope below and still be able to access them afterwards.
    language = ""
@@ -83,12 +85,12 @@ def correct_language(row):
    detected_language = languages.get(alpha_2=langid_classification[0])
    if len(language) == 2 and language != detected_language.alpha_2:
        print(
-            f"Possibly incorrect language {language} (detected {detected_language.alpha_2}): {title}"
+            f"{Fore.YELLOW}Possibly incorrect language {language} (detected {detected_language.alpha_2}): {Fore.RESET}{title}"
        )

    elif len(language) == 3 and language != detected_language.alpha_3:
        print(
-            f"Possibly incorrect language {language} (detected {detected_language.alpha_3}): {title}"
+            f"{Fore.YELLOW}Possibly incorrect language {language} (detected {detected_language.alpha_3}): {Fore.RESET}{title}"
        )

    else:
--- a/csv_metadata_quality/fix.py
+++ b/csv_metadata_quality/fix.py
@@ -2,6 +2,7 @@ import re
 from unicodedata import normalize

 import pandas as pd
+from colorama import Fore

 from csv_metadata_quality.util import is_nfc

@@ -29,7 +30,9 @@ def whitespace(field, field_name):
        match = re.findall(pattern, value)

        if match:
-            print(f"Removing excessive whitespace ({field_name}): {value}")
+            print(
+                f"{Fore.GREEN}Removing excessive whitespace ({field_name}): {Fore.RESET}{value}"
+            )
            value = re.sub(pattern, " ", value)

        # Save cleaned value
@@ -62,7 +65,9 @@ def separators(field, field_name):
    for value in field.split("||"):
        # Check if the value is blank and skip it
        if value == "":
-            print(f"Fixing unnecessary multi-value separator ({field_name}): {field}")
+            print(
+                f"{Fore.GREEN}Fixing unnecessary multi-value separator ({field_name}): {Fore.RESET}{field}"
+            )

            continue

@@ -71,7 +76,9 @@ def separators(field, field_name):
        match = re.findall(pattern, value)

        if match:
-            print(f"Fixing invalid multi-value separator ({field_name}): {value}")
+            print(
+                f"{Fore.RED}Fixing invalid multi-value separator ({field_name}): {Fore.RESET}{value}"
+            )

            value = re.sub(pattern, "||", value)

@@ -107,7 +114,7 @@ def unnecessary_unicode(field):
    match = re.findall(pattern, field)

    if match:
-        print(f"Removing unnecessary Unicode (U+200B): {field}")
+        print(f"{Fore.GREEN}Removing unnecessary Unicode (U+200B): {Fore.RESET}{field}")
        field = re.sub(pattern, "", field)

    # Check for replacement characters (U+FFFD)
@@ -115,7 +122,7 @@ def unnecessary_unicode(field):
    match = re.findall(pattern, field)

    if match:
-        print(f"Removing unnecessary Unicode (U+FFFD): {field}")
+        print(f"{Fore.GREEN}Removing unnecessary Unicode (U+FFFD): {Fore.RESET}{field}")
        field = re.sub(pattern, "", field)

    # Check for no-break spaces (U+00A0)
@@ -123,7 +130,9 @@ def unnecessary_unicode(field):
    match = re.findall(pattern, field)

    if match:
-        print(f"Replacing unnecessary Unicode (U+00A0): {field}")
+        print(
+            f"{Fore.GREEN}Replacing unnecessary Unicode (U+00A0): {Fore.RESET}{field}"
+        )
        field = re.sub(pattern, " ", field)

    # Check for soft hyphens (U+00AD), sometimes preceeded with a normal hyphen
@@ -131,7 +140,9 @@ def unnecessary_unicode(field):
    match = re.findall(pattern, field)

    if match:
-        print(f"Replacing unnecessary Unicode (U+00AD): {field}")
+        print(
+            f"{Fore.GREEN}Replacing unnecessary Unicode (U+00AD): {Fore.RESET}{field}"
+        )
        field = re.sub(pattern, "-", field)

    return field
@@ -156,7 +167,9 @@ def duplicates(field, field_name):
        if value not in new_values:
            new_values.append(value)
        else:
-            print(f"Removing duplicate value ({field_name}): {value}")
+            print(
+                f"{Fore.GREEN}Removing duplicate value ({field_name}): {Fore.RESET}{value}"
+            )

    # Create a new field consisting of all values joined with "||"
    new_field = "||".join(new_values)
@@ -189,7 +202,7 @@ def newlines(field):
    match = re.findall(r"\n", field)

    if match:
-        print(f"Removing newline: {field}")
+        print(f"{Fore.GREEN}Removing newline: {Fore.RESET}{field}")
        field = field.replace("\n", "")

    return field
@@ -213,7 +226,9 @@ def comma_space(field, field_name):
    match = re.findall(r",\w", field)

    if match:
-        print(f"Adding space after comma ({field_name}): {field}")
+        print(
+            f"{Fore.GREEN}Adding space after comma ({field_name}): {Fore.RESET}{field}"
+        )
        field = re.sub(r",(\w)", r", \1", field)

    return field
@@ -234,7 +249,7 @@ def normalize_unicode(field, field_name):

    # Check if the current string is using normalized Unicode (NFC)
    if not is_nfc(field):
-        print(f"Normalizing Unicode ({field_name}): {field}")
+        print(f"{Fore.GREEN}Normalizing Unicode ({field_name}): {Fore.RESET}{field}")
        field = normalize("NFC", field)

    return field
--- a/csv_metadata_quality/version.py
+++ b/csv_metadata_quality/version.py
@@ -1 +1 @@
-VERSION = "0.4.2"
+VERSION = "0.4.4"
--- a/poetry.lock
+++ b/poetry.lock
@@ -67,7 +67,6 @@ description = "Disable App Nap on macOS >= 10.9"
 category = "dev"
 optional = false
 python-versions = "*"
-marker = "python_version >= \"3.7\" and python_version < \"4.0\" and sys_platform == \"darwin\""

 [[package]]
 name = "atomicwrites"
@@ -76,7 +75,6 @@ description = "Atomic file writes."
 category = "dev"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
-marker = "sys_platform == \"win32\""

 [[package]]
 name = "attrs"
@@ -87,10 +85,10 @@ optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"

 [package.extras]
-dev = ["coverage (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "zope.interface", "furo", "sphinx", "pre-commit"]
+dev = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "zope.interface", "furo", "sphinx", "pre-commit"]
 docs = ["furo", "sphinx", "zope.interface"]
-tests = ["coverage (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "zope.interface"]
-tests_no_zope = ["coverage (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six"]
+tests = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "zope.interface"]
+tests_no_zope = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six"]

 [[package]]
 name = "babel"
@@ -110,7 +108,6 @@ description = "Specifications for callback functions passed in to an API"
 category = "dev"
 optional = false
 python-versions = "*"
-marker = "python_version >= \"3.7\" and python_version < \"4.0\""

 [[package]]
 name = "black"
@@ -120,10 +117,6 @@ category = "dev"
 optional = false
 python-versions = ">=3.6"

-[package.extras]
-colorama = ["colorama (>=0.4.3)"]
-d = ["aiohttp (>=3.3.2)", "aiohttp-cors"]
-
 [package.dependencies]
 appdirs = "*"
 click = ">=7.1.2"
@@ -134,6 +127,10 @@ toml = ">=0.10.1"
 typed-ast = ">=1.4.0"
 typing-extensions = ">=3.7.4"

+[package.extras]
+colorama = ["colorama (>=0.4.3)"]
+d = ["aiohttp (>=3.3.2)", "aiohttp-cors"]
+
 [[package]]
 name = "certifi"
 version = "2020.12.5"
@@ -162,10 +159,9 @@ python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*"
 name = "colorama"
 version = "0.4.4"
 description = "Cross-platform colored terminal text."
-category = "dev"
+category = "main"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*"
-marker = "python_version >= \"3.7\" and python_version < \"4.0\" and sys_platform == \"win32\" or sys_platform == \"win32\""

 [[package]]
 name = "csvkit"
@@ -197,7 +193,6 @@ description = "Decorators for Humans"
 category = "dev"
 optional = false
 python-versions = ">=2.6, !=3.0.*, !=3.1.*"
-marker = "python_version >= \"3.7\" and python_version < \"4.0\""

 [[package]]
 name = "et-xmlfile"
@@ -238,12 +233,23 @@ python-versions = "*"

 [[package]]
 name = "ipython"
-version = "7.19.0"
+version = "7.20.0"
 description = "IPython: Productive Interactive Computing"
 category = "dev"
 optional = false
 python-versions = ">=3.7"
-marker = "python_version >= \"3.7\" and python_version < \"4.0\""
+
+[package.dependencies]
+appnope = {version = "*", markers = "sys_platform == \"darwin\""}
+backcall = "*"
+colorama = {version = "*", markers = "sys_platform == \"win32\""}
+decorator = "*"
+jedi = ">=0.16"
+pexpect = {version = ">4.3", markers = "sys_platform != \"win32\""}
+pickleshare = "*"
+prompt-toolkit = ">=2.0.0,<3.0.0 || >3.0.0,<3.0.1 || >3.0.1,<3.1.0"
+pygments = "*"
+traitlets = ">=4.2"

 [package.extras]
 all = ["Sphinx (>=1.3)", "ipykernel", "ipyparallel", "ipywidgets", "nbconvert", "nbformat", "nose (>=0.10.1)", "notebook", "numpy (>=1.14)", "pygments", "qtconsole", "requests", "testpath"]
@@ -256,19 +262,6 @@ parallel = ["ipyparallel"]
 qtconsole = ["qtconsole"]
 test = ["nose (>=0.10.1)", "requests", "testpath", "pygments", "nbformat", "ipykernel", "numpy (>=1.14)"]

-[package.dependencies]
-appnope = "*"
-backcall = "*"
-colorama = "*"
-decorator = "*"
-jedi = ">=0.10"
-pexpect = ">4.3"
-pickleshare = "*"
-prompt-toolkit = ">=2.0.0,<3.0.0 || >3.0.0,<3.0.1 || >3.0.1,<3.1.0"
-pygments = "*"
-setuptools = ">=18.5"
-traitlets = ">=4.2"
-
 [[package]]
 name = "ipython-genutils"
 version = "0.2.0"
@@ -276,7 +269,6 @@ description = "Vestigial utilities from IPython"
 category = "dev"
 optional = false
 python-versions = "*"
-marker = "python_version >= \"3.7\" and python_version < \"4.0\""

 [[package]]
 name = "isodate"
@@ -317,15 +309,14 @@ description = "An autocompletion tool for Python that can be used for text edito
 category = "dev"
 optional = false
 python-versions = ">=3.6"
-marker = "python_version >= \"3.7\" and python_version < \"4.0\""
-
-[package.extras]
-qa = ["flake8 (3.8.3)", "mypy (0.782)"]
-testing = ["Django (<3.1)", "colorama", "docopt", "pytest (<6.0.0)"]

 [package.dependencies]
 parso = ">=0.8.0,<0.9.0"

+[package.extras]
+qa = ["flake8 (==3.8.3)", "mypy (==0.782)"]
+testing = ["Django (<3.1)", "colorama", "docopt", "pytest (<6.0.0)"]
+
 [[package]]
 name = "langid"
 version = "1.1.6"
@@ -366,11 +357,11 @@ python-versions = "*"

 [[package]]
 name = "numpy"
-version = "1.19.5"
+version = "1.20.1"
 description = "NumPy is the fundamental package for array computing with Python."
 category = "main"
 optional = false
-python-versions = ">=3.6"
+python-versions = ">=3.7"

 [[package]]
 name = "openpyxl"
@@ -386,7 +377,7 @@ jdcal = "*"

 [[package]]
 name = "packaging"
-version = "20.8"
+version = "20.9"
 description = "Core utilities for Python packages"
 category = "dev"
 optional = false
@@ -397,20 +388,20 @@ pyparsing = ">=2.0.2"

 [[package]]
 name = "pandas"
-version = "1.2.1"
+version = "1.2.2"
 description = "Powerful data structures for data analysis, time series, and statistics"
 category = "main"
 optional = false
 python-versions = ">=3.7.1"

-[package.extras]
-test = ["pytest (>=5.0.1)", "pytest-xdist", "hypothesis (>=3.58)"]
-
 [package.dependencies]
 numpy = ">=1.16.5"
 python-dateutil = ">=2.7.3"
 pytz = ">=2017.3"

+[package.extras]
+test = ["pytest (>=5.0.1)", "pytest-xdist", "hypothesis (>=3.58)"]
+
 [[package]]
 name = "parsedatetime"
 version = "2.6"
@@ -426,10 +417,9 @@ description = "A Python Parser"
 category = "dev"
 optional = false
 python-versions = ">=3.6"
-marker = "python_version >= \"3.7\" and python_version < \"4.0\""

 [package.extras]
-qa = ["flake8 (3.8.3)", "mypy (0.782)"]
+qa = ["flake8 (==3.8.3)", "mypy (==0.782)"]
 testing = ["docopt", "pytest (<6.0.0)"]

 [[package]]
@@ -447,7 +437,6 @@ description = "Pexpect allows easy control of interactive console applications."
 category = "dev"
 optional = false
 python-versions = "*"
-marker = "python_version >= \"3.7\" and python_version < \"4.0\" and sys_platform != \"win32\""

 [package.dependencies]
 ptyprocess = ">=0.5"
@@ -459,7 +448,6 @@ description = "Tiny 'shelve'-like database with concurrency support"
 category = "dev"
 optional = false
 python-versions = "*"
-marker = "python_version >= \"3.7\" and python_version < \"4.0\""

 [[package]]
 name = "pluggy"
@@ -474,12 +462,11 @@ dev = ["pre-commit", "tox"]

 [[package]]
 name = "prompt-toolkit"
-version = "3.0.14"
+version = "3.0.16"
 description = "Library for building powerful interactive command lines in Python"
 category = "dev"
 optional = false
 python-versions = ">=3.6.1"
-marker = "python_version >= \"3.7\" and python_version < \"4.0\""

 [package.dependencies]
 wcwidth = "*"
@@ -491,7 +478,6 @@ description = "Run a subprocess in a pseudo terminal"
 category = "dev"
 optional = false
 python-versions = "*"
-marker = "python_version >= \"3.7\" and python_version < \"4.0\" and sys_platform != \"win32\""

 [[package]]
 name = "py"
@@ -527,12 +513,11 @@ python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"

 [[package]]
 name = "pygments"
-version = "2.7.4"
+version = "2.8.0"
 description = "Pygments is a syntax highlighting package written in Python."
 category = "dev"
 optional = false
 python-versions = ">=3.5"
-marker = "python_version >= \"3.7\" and python_version < \"4.0\""

 [[package]]
 name = "pyparsing"
@@ -550,19 +535,19 @@ category = "dev"
 optional = false
 python-versions = ">=3.6"

-[package.extras]
-testing = ["argcomplete", "hypothesis (>=3.56)", "mock", "nose", "requests", "xmlschema"]
-
 [package.dependencies]
-atomicwrites = ">=1.0"
+atomicwrites = {version = ">=1.0", markers = "sys_platform == \"win32\""}
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-colorama = "*"
+colorama = {version = "*", markers = "sys_platform == \"win32\""}
 iniconfig = "*"
 packaging = "*"
 pluggy = ">=0.12,<1.0.0a1"
 py = ">=1.8.2"
 toml = "*"

+[package.extras]
+testing = ["argcomplete", "hypothesis (>=3.56)", "mock", "nose", "requests", "xmlschema"]
+
 [[package]]
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 version = "0.3.0a0"
@@ -594,15 +579,15 @@ category = "dev"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*"

-[package.extras]
-unidecode = ["Unidecode (>=1.1.1)"]
-
 [package.dependencies]
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+[package.extras]
+unidecode = ["Unidecode (>=1.1.1)"]
+
 [[package]]
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-version = "1.15"
+version = "1.16"
 description = "Python module to handle standardized numbers and codes"
 category = "main"
 optional = false
@@ -623,7 +608,7 @@ python-versions = "*"

 [[package]]
 name = "pytz"
-version = "2020.5"
+version = "2021.1"
 description = "World timezone definitions, modern and historical"
 category = "main"
 optional = false
@@ -645,16 +630,16 @@ category = "main"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*"

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+socks = ["PySocks (>=1.5.6,!=1.5.7)", "win-inet-pton"]
+
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@@ -676,7 +661,7 @@ python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*"

 [[package]]
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-version = "1.3.22"
+version = "1.3.23"
 description = "Database Abstraction Library"
 category = "dev"
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@@ -689,10 +674,10 @@ mssql_pyodbc = ["pyodbc"]
 mysql = ["mysqlclient"]
 oracle = ["cx-oracle"]
 postgresql = ["psycopg2"]
-postgresql_pg8000 = ["pg8000"]
+postgresql_pg8000 = ["pg8000 (<1.16.6)"]
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 postgresql_psycopg2cffi = ["psycopg2cffi"]
-pymysql = ["pymysql"]
+pymysql = ["pymysql (<1)", "pymysql"]

 [[package]]
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@@ -725,14 +710,13 @@ description = "Traitlets Python configuration system"
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 optional = false
 python-versions = ">=3.7"
-marker = "python_version >= \"3.7\" and python_version < \"4.0\""
-
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-test = ["pytest"]

 [package.dependencies]
 ipython-genutils = "*"

+[package.extras]
+test = ["pytest"]
+
 [[package]]
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 version = "1.4.2"
@@ -751,7 +735,7 @@ python-versions = "*"

 [[package]]
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-version = "1.26.2"
+version = "1.26.3"
 description = "HTTP library with thread-safe connection pooling, file post, and more."
 category = "main"
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@@ -760,7 +744,7 @@ python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, <4"
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-socks = ["PySocks (>=1.5.6,<1.5.7 || >1.5.7,<2.0)"]
+socks = ["PySocks (>=1.5.6,!=1.5.7,<2.0)"]

 [[package]]
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 optional = false
 python-versions = "*"
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 [[package]]
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 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"

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@@ -1198,8 +1172,8 @@ typing-extensions = [
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--- a/pyproject.toml
+++ b/pyproject.toml
@@ -1,6 +1,6 @@
 [tool.poetry]
 name = "csv-metadata-quality"
-version = "0.4.2"
+version = "0.4.4"
 description="A simple, but opinionated CSV quality checking and fixing pipeline for CSVs in the DSpace ecosystem."
 authors = ["Alan Orth <alan.orth@gmail.com>"]
 license="GPL-3.0-only"
@@ -16,6 +16,7 @@ requests = "^2.23.0"
 requests-cache = "^0.5.2"
 pycountry = "^19.8.18"
 langid = "^1.1.6"
+colorama = "^0.4.4"

 [tool.poetry.dev-dependencies]
 pytest = "^6.1.1"
--- a/requirements-dev.txt
+++ b/requirements-dev.txt
@@ -1,353 +1,71 @@
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-    --hash=sha256:b3bda1d108d5dd99f4a20d24d9c348e91c4db7ab1b749200bded2f839ccbe68f
-traitlets==5.0.5; python_version >= "3.7" and python_version < "4.0" \
-    --hash=sha256:69ff3f9d5351f31a7ad80443c2674b7099df13cc41fc5fa6e2f6d3b0330b0426 \
-    --hash=sha256:178f4ce988f69189f7e523337a3e11d91c786ded9360174a3d9ca83e79bc5396
-typed-ast==1.4.2 \
-    --hash=sha256:7703620125e4fb79b64aa52427ec192822e9f45d37d4b6625ab37ef403e1df70 \
-    --hash=sha256:c9aadc4924d4b5799112837b226160428524a9a45f830e0d0f184b19e4090487 \
-    --hash=sha256:9ec45db0c766f196ae629e509f059ff05fc3148f9ffd28f3cfe75d4afb485412 \
-    --hash=sha256:85f95aa97a35bdb2f2f7d10ec5bbdac0aeb9dafdaf88e17492da0504de2e6400 \
-    --hash=sha256:9044ef2df88d7f33692ae3f18d3be63dec69c4fb1b5a4a9ac950f9b4ba571606 \
-    --hash=sha256:c1c876fd795b36126f773db9cbb393f19808edd2637e00fd6caba0e25f2c7b64 \
-    --hash=sha256:5dcfc2e264bd8a1db8b11a892bd1647154ce03eeba94b461effe68790d8b8e07 \
-    --hash=sha256:8db0e856712f79c45956da0c9a40ca4246abc3485ae0d7ecc86a20f5e4c09abc \
-    --hash=sha256:d003156bb6a59cda9050e983441b7fa2487f7800d76bdc065566b7d728b4581a \
-    --hash=sha256:4c790331247081ea7c632a76d5b2a265e6d325ecd3179d06e9cf8d46d90dd151 \
-    --hash=sha256:d175297e9533d8d37437abc14e8a83cbc68af93cc9c1c59c2c292ec59a0697a3 \
-    --hash=sha256:cf54cfa843f297991b7388c281cb3855d911137223c6b6d2dd82a47ae5125a41 \
-    --hash=sha256:b4fcdcfa302538f70929eb7b392f536a237cbe2ed9cba88e3bf5027b39f5f77f \
-    --hash=sha256:987f15737aba2ab5f3928c617ccf1ce412e2e321c77ab16ca5a293e7bbffd581 \
-    --hash=sha256:37f48d46d733d57cc70fd5f30572d11ab8ed92da6e6b28e024e4a3edfb456e37 \
-    --hash=sha256:36d829b31ab67d6fcb30e185ec996e1f72b892255a745d3a82138c97d21ed1cd \
-    --hash=sha256:8368f83e93c7156ccd40e49a783a6a6850ca25b556c0fa0240ed0f659d2fe496 \
-    --hash=sha256:963c80b583b0661918718b095e02303d8078950b26cc00b5e5ea9ababe0de1fc \
-    --hash=sha256:e683e409e5c45d5c9082dc1daf13f6374300806240719f95dc783d1fc942af10 \
-    --hash=sha256:84aa6223d71012c68d577c83f4e7db50d11d6b1399a9c779046d75e24bed74ea \
-    --hash=sha256:a38878a223bdd37c9709d07cd357bb79f4c760b29210e14ad0fb395294583787 \
-    --hash=sha256:a2c927c49f2029291fbabd673d51a2180038f8cd5a5b2f290f78c4516be48be2 \
-    --hash=sha256:c0c74e5579af4b977c8b932f40a5464764b2f86681327410aa028a22d2f54937 \
-    --hash=sha256:07d49388d5bf7e863f7fa2f124b1b1d89d8aa0e2f7812faff0a5658c01c59aa1 \
-    --hash=sha256:240296b27397e4e37874abb1df2a608a92df85cf3e2a04d0d4d61055c8305ba6 \
-    --hash=sha256:d746a437cdbca200622385305aedd9aef68e8a645e385cc483bdc5e488f07166 \
-    --hash=sha256:14bf1522cdee369e8f5581238edac09150c765ec1cb33615855889cf33dcb92d \
-    --hash=sha256:cc7b98bf58167b7f2db91a4327da24fb93368838eb84a44c472283778fc2446b \
-    --hash=sha256:7147e2a76c75f0f64c4319886e7639e490fee87c9d25cb1d4faef1d8cf83a440 \
-    --hash=sha256:9fc0b3cb5d1720e7141d103cf4819aea239f7d136acf9ee4a69b047b7986175a
-typing-extensions==3.7.4.3 \
-    --hash=sha256:dafc7639cde7f1b6e1acc0f457842a83e722ccca8eef5270af2d74792619a89f \
-    --hash=sha256:7cb407020f00f7bfc3cb3e7881628838e69d8f3fcab2f64742a5e76b2f841918 \
-    --hash=sha256:99d4073b617d30288f569d3f13d2bd7548c3a7e4c8de87db09a9d29bb3a4a60c
-urllib3==1.26.2 \
-    --hash=sha256:d8ff90d979214d7b4f8ce956e80f4028fc6860e4431f731ea4a8c08f23f99473 \
-    --hash=sha256:19188f96923873c92ccb987120ec4acaa12f0461fa9ce5d3d0772bc965a39e08
-wcwidth==0.2.5; python_version >= "3.7" and python_version < "4.0" \
-    --hash=sha256:beb4802a9cebb9144e99086eff703a642a13d6a0052920003a230f3294bbe784 \
-    --hash=sha256:c4d647b99872929fdb7bdcaa4fbe7f01413ed3d98077df798530e5b04f116c83
-xlrd==1.2.0 \
-    --hash=sha256:e551fb498759fa3a5384a94ccd4c3c02eb7c00ea424426e212ac0c57be9dfbde \
-    --hash=sha256:546eb36cee8db40c3eaa46c351e67ffee6eeb5fa2650b71bc4c758a29a1b29b2
+agate-dbf==0.2.2
+agate-excel==0.2.3
+agate-sql==0.5.5
+agate==1.6.1
+appdirs==1.4.4; python_version >= "3.6"
+appnope==0.1.2; python_version >= "3.7" and python_version < "4.0" and sys_platform == "darwin"
+atomicwrites==1.4.0; python_version >= "3.6" and python_full_version < "3.0.0" and sys_platform == "win32" and (python_version >= "3.6" and python_full_version < "3.0.0" or python_full_version >= "3.4.0" and python_version >= "3.6") or sys_platform == "win32" and python_version >= "3.6" and python_full_version >= "3.4.0" and (python_version >= "3.6" and python_full_version < "3.0.0" or python_full_version >= "3.4.0" and python_version >= "3.6")
+attrs==20.3.0; python_version >= "3.6" and python_full_version < "3.0.0" or python_full_version >= "3.4.0" and python_version >= "3.6"
+babel==2.9.0; python_version >= "2.7" and python_full_version < "3.0.0" or python_full_version >= "3.4.0"
+backcall==0.2.0; python_version >= "3.7" and python_version < "4.0"
+black==20.8b1; python_version >= "3.6"
+certifi==2020.12.5; python_version >= "2.7" and python_full_version < "3.0.0" or python_full_version >= "3.5.0"
+chardet==4.0.0; python_version >= "2.7" and python_full_version < "3.0.0" or python_full_version >= "3.5.0"
+click==7.1.2; python_version >= "3.6" and python_full_version < "3.0.0" or python_full_version >= "3.5.0" and python_version >= "3.6"
+colorama==0.4.4; (python_version >= "2.7" and python_full_version < "3.0.0") or (python_full_version >= "3.5.0")
+csvkit==1.0.5
+dbfread==2.0.7
+decorator==4.4.2; python_version >= "3.7" and python_full_version < "3.0.0" and python_version < "4.0" or python_version >= "3.7" and python_version < "4.0" and python_full_version >= "3.2.0"
+et-xmlfile==1.0.1; python_version >= "3.6"
+flake8==3.8.4; (python_version >= "2.7" and python_full_version < "3.0.0") or (python_full_version >= "3.4.0")
+idna==2.10; python_version >= "2.7" and python_full_version < "3.0.0" or python_full_version >= "3.5.0"
+iniconfig==1.1.1; python_version >= "3.6" and python_full_version < "3.0.0" or python_full_version >= "3.4.0" and python_version >= "3.6"
+ipython-genutils==0.2.0; python_version >= "3.7" and python_version < "4.0"
+ipython==7.20.0; python_version >= "3.7" and python_version < "4.0"
+isodate==0.6.0
+isort==5.7.0; python_version >= "3.6" and python_version < "4.0"
+jdcal==1.4.1; python_version >= "3.6"
+jedi==0.18.0; python_version >= "3.7" and python_version < "4.0"
+langid==1.1.6
+leather==0.3.3
+mccabe==0.6.1; python_version >= "2.7" and python_full_version < "3.0.0" or python_full_version >= "3.4.0"
+mypy-extensions==0.4.3; python_version >= "3.6"
+numpy==1.20.1; python_version >= "3.7" and python_full_version >= "3.7.1"
+openpyxl==3.0.6; python_version >= "3.6"
+packaging==20.9; python_version >= "3.6" and python_full_version < "3.0.0" or python_full_version >= "3.4.0" and python_version >= "3.6"
+pandas==1.2.2; python_full_version >= "3.7.1"
+parsedatetime==2.6
+parso==0.8.1; python_version >= "3.7" and python_version < "4.0"
+pathspec==0.8.1; python_version >= "3.6" and python_full_version < "3.0.0" or python_full_version >= "3.5.0" and python_version >= "3.6"
+pexpect==4.8.0; python_version >= "3.7" and python_version < "4.0" and sys_platform != "win32"
+pickleshare==0.7.5; python_version >= "3.7" and python_version < "4.0"
+pluggy==0.13.1; python_version >= "3.6" and python_full_version < "3.0.0" or python_full_version >= "3.4.0" and python_version >= "3.6"
+prompt-toolkit==3.0.16; python_version >= "3.7" and python_version < "4.0" and python_full_version >= "3.6.1"
+ptyprocess==0.7.0; python_version >= "3.7" and python_version < "4.0" and sys_platform != "win32"
+py==1.10.0; python_version >= "3.6" and python_full_version < "3.0.0" or python_full_version >= "3.4.0" and python_version >= "3.6"
+pycodestyle==2.6.0; python_version >= "2.7" and python_full_version < "3.0.0" or python_full_version >= "3.4.0"
+pycountry==19.8.18
+pyflakes==2.2.0; python_version >= "2.7" and python_full_version < "3.0.0" or python_full_version >= "3.4.0"
+pygments==2.8.0; python_version >= "3.7" and python_version < "4.0"
+pyparsing==2.4.7; python_version >= "3.6" and python_full_version < "3.0.0" or python_full_version >= "3.4.0" and python_version >= "3.6"
+pytest-clarity==0.3.0a0; (python_version >= "2.7" and python_full_version < "3.0.0") or (python_full_version >= "3.4.0")
+pytest==6.2.2; python_version >= "3.6"
+python-dateutil==2.8.1; python_full_version >= "3.7.1"
+python-slugify==4.0.1; python_version >= "2.7" and python_full_version < "3.0.0" or python_full_version >= "3.5.0"
+python-stdnum==1.16
+pytimeparse==1.1.8
+pytz==2021.1; python_full_version >= "3.7.1"
+regex==2020.11.13; python_version >= "3.6"
+requests-cache==0.5.2
+requests==2.25.1; (python_version >= "2.7" and python_full_version < "3.0.0") or (python_full_version >= "3.5.0")
+six==1.15.0; python_full_version >= "3.7.1"
+sqlalchemy==1.3.23; python_version >= "2.7" and python_full_version < "3.0.0" or python_full_version >= "3.4.0"
+termcolor==1.1.0; python_version >= "2.7" and python_full_version < "3.0.0" or python_full_version >= "3.4.0"
+text-unidecode==1.3; python_version >= "2.7" and python_full_version < "3.0.0" or python_full_version >= "3.5.0"
+toml==0.10.2; python_version >= "3.6" and python_full_version < "3.0.0" or python_full_version >= "3.4.0" and python_version >= "3.6"
+traitlets==5.0.5; python_version >= "3.7" and python_version < "4.0"
+typed-ast==1.4.2; python_version >= "3.6"
+typing-extensions==3.7.4.3; python_version >= "3.6"
+urllib3==1.26.3; python_version >= "2.7" and python_full_version < "3.0.0" or python_full_version >= "3.5.0" and python_version < "4"
+wcwidth==0.2.5; python_version >= "3.7" and python_version < "4.0" and python_full_version >= "3.6.1"
+xlrd==1.2.0; (python_version >= "2.7" and python_full_version < "3.0.0") or (python_full_version >= "3.4.0")
--- a/requirements.txt
+++ b/requirements.txt
@@ -1,90 +1,16 @@
-certifi==2020.12.5 \
-    --hash=sha256:719a74fb9e33b9bd44cc7f3a8d94bc35e4049deebe19ba7d8e108280cfd59830 \
-    --hash=sha256:1a4995114262bffbc2413b159f2a1a480c969de6e6eb13ee966d470af86af59c
-chardet==4.0.0 \
-    --hash=sha256:f864054d66fd9118f2e67044ac8981a54775ec5b67aed0441892edb553d21da5 \
-    --hash=sha256:0d6f53a15db4120f2b08c94f11e7d93d2c911ee118b6b30a04ec3ee8310179fa
-idna==2.10 \
-    --hash=sha256:b97d804b1e9b523befed77c48dacec60e6dcb0b5391d57af6a65a312a90648c0 \
-    --hash=sha256:b307872f855b18632ce0c21c5e45be78c0ea7ae4c15c828c20788b26921eb3f6
-langid==1.1.6 \
-    --hash=sha256:044bcae1912dab85c33d8e98f2811b8f4ff1213e5e9a9e9510137b84da2cb293
-numpy==1.19.5 \
-    --hash=sha256:cc6bd4fd593cb261332568485e20a0712883cf631f6f5e8e86a52caa8b2b50ff \
-    --hash=sha256:aeb9ed923be74e659984e321f609b9ba54a48354bfd168d21a2b072ed1e833ea \
-    --hash=sha256:8b5e972b43c8fc27d56550b4120fe6257fdc15f9301914380b27f74856299fea \
-    --hash=sha256:43d4c81d5ffdff6bae58d66a3cd7f54a7acd9a0e7b18d97abb255defc09e3140 \
-    --hash=sha256:a4646724fba402aa7504cd48b4b50e783296b5e10a524c7a6da62e4a8ac9698d \
-    --hash=sha256:2e55195bc1c6b705bfd8ad6f288b38b11b1af32f3c8289d6c50d47f950c12e76 \
-    --hash=sha256:39b70c19ec771805081578cc936bbe95336798b7edf4732ed102e7a43ec5c07a \
-    --hash=sha256:dbd18bcf4889b720ba13a27ec2f2aac1981bd41203b3a3b27ba7a33f88ae4827 \
-    --hash=sha256:603aa0706be710eea8884af807b1b3bc9fb2e49b9f4da439e76000f3b3c6ff0f \
-    --hash=sha256:cae865b1cae1ec2663d8ea56ef6ff185bad091a5e33ebbadd98de2cfa3fa668f \
-    --hash=sha256:36674959eed6957e61f11c912f71e78857a8d0604171dfd9ce9ad5cbf41c511c \
-    --hash=sha256:06fab248a088e439402141ea04f0fffb203723148f6ee791e9c75b3e9e82f080 \
-    --hash=sha256:6149a185cece5ee78d1d196938b2a8f9d09f5a5ebfbba66969302a778d5ddd1d \
-    --hash=sha256:50a4a0ad0111cc1b71fa32dedd05fa239f7fb5a43a40663269bb5dc7877cfd28 \
-    --hash=sha256:d051ec1c64b85ecc69531e1137bb9751c6830772ee5c1c426dbcfe98ef5788d7 \
-    --hash=sha256:a12ff4c8ddfee61f90a1633a4c4afd3f7bcb32b11c52026c92a12e1325922d0d \
-    --hash=sha256:cf2402002d3d9f91c8b01e66fbb436a4ed01c6498fffed0e4c7566da1d40ee1e \
-    --hash=sha256:1ded4fce9cfaaf24e7a0ab51b7a87be9038ea1ace7f34b841fe3b6894c721d1c \
-    --hash=sha256:012426a41bc9ab63bb158635aecccc7610e3eff5d31d1eb43bc099debc979d94 \
-    --hash=sha256:759e4095edc3c1b3ac031f34d9459fa781777a93ccc633a472a5468587a190ff \
-    --hash=sha256:a9d17f2be3b427fbb2bce61e596cf555d6f8a56c222bd2ca148baeeb5e5c783c \
-    --hash=sha256:99abf4f353c3d1a0c7a5f27699482c987cf663b1eac20db59b8c7b061eabd7fc \
-    --hash=sha256:384ec0463d1c2671170901994aeb6dce126de0a95ccc3976c43b0038a37329c2 \
-    --hash=sha256:811daee36a58dc79cf3d8bdd4a490e4277d0e4b7d103a001a4e73ddb48e7e6aa \
-    --hash=sha256:c843b3f50d1ab7361ca4f0b3639bf691569493a56808a0b0c54a051d260b7dbd \
-    --hash=sha256:d6631f2e867676b13026e2846180e2c13c1e11289d67da08d71cacb2cd93d4aa \
-    --hash=sha256:7fb43004bce0ca31d8f13a6eb5e943fa73371381e53f7074ed21a4cb786c32f8 \
-    --hash=sha256:2ea52bd92ab9f768cc64a4c3ef8f4b2580a17af0a5436f6126b08efbd1838371 \
-    --hash=sha256:400580cbd3cff6ffa6293df2278c75aef2d58d8d93d3c5614cd67981dae68ceb \
-    --hash=sha256:df609c82f18c5b9f6cb97271f03315ff0dbe481a2a02e56aeb1b1a985ce38e60 \
-    --hash=sha256:ab83f24d5c52d60dbc8cd0528759532736b56db58adaa7b5f1f76ad551416a1e \
-    --hash=sha256:0eef32ca3132a48e43f6a0f5a82cb508f22ce5a3d6f67a8329c81c8e226d3f6e \
-    --hash=sha256:a0d53e51a6cb6f0d9082decb7a4cb6dfb33055308c4c44f53103c073f649af73 \
-    --hash=sha256:a76f502430dd98d7546e1ea2250a7360c065a5fdea52b2dffe8ae7180909b6f4
-pandas==1.2.1 \
-    --hash=sha256:50e6c0a17ef7f831b5565fd0394dbf9bfd5d615ee4dd4bb60a3d8c9d2e872323 \
-    --hash=sha256:324e60bea729cf3b55c1bf9e88fe8b9932c26f8669d13b928e3c96b3a1453dff \
-    --hash=sha256:37443199f451f8badfe0add666e43cdb817c59fa36bceedafd9c543a42f236ca \
-    --hash=sha256:23ac77a3a222d9304cb2a7934bb7b4805ff43d513add7a42d1a22dc7df14edd2 \
-    --hash=sha256:496fcc29321e9a804d56d5aa5d7ec1320edfd1898eee2f451aa70171cf1d5a29 \
-    --hash=sha256:30e9e8bc8c5c17c03d943e8d6f778313efff59e413b8dbdd8214c2ed9aa165f6 \
-    --hash=sha256:055647e7f4c5e66ba92c2a7dcae6c2c57898b605a3fb007745df61cc4015937f \
-    --hash=sha256:9d45f58b03af1fea4b48e44aa38a819a33dccb9821ef9e1d68f529995f8a632f \
-    --hash=sha256:b26e2dabda73d347c7af3e6fed58483161c7b87a886a4e06d76ccfe55a044aa9 \
-    --hash=sha256:47ec0808a8357ab3890ce0eca39a63f79dcf941e2e7f494470fe1c9ec43f6091 \
-    --hash=sha256:57d5c7ac62925a8d2ab43ea442b297a56cc8452015e71e24f4aa7e4ed6be3d77 \
-    --hash=sha256:d7cca42dba13bfee369e2944ae31f6549a55831cba3117e17636955176004088 \
-    --hash=sha256:cfd237865d878da9b65cfee883da5e0067f5e2ff839e459466fb90565a77bda3 \
-    --hash=sha256:050ed2c9d825ef36738e018454e6d055c63d947c1d52010fbadd7584f09df5db \
-    --hash=sha256:fe7de6fed43e7d086e3d947651ec89e55ddf00102f9dd5758763d56d182f0564 \
-    --hash=sha256:2de012a36cc507debd9c3351b4d757f828d5a784a5fc4e6766eafc2b56e4b0f5 \
-    --hash=sha256:5527c5475d955c0bc9689c56865aaa2a7b13c504d6c44f0aadbf57b565af5ebd
-pycountry==19.8.18 \
-    --hash=sha256:3c57aa40adcf293d59bebaffbe60d8c39976fba78d846a018dc0c2ec9c6cb3cb
-python-dateutil==2.8.1 \
-    --hash=sha256:73ebfe9dbf22e832286dafa60473e4cd239f8592f699aa5adaf10050e6e1823c \
-    --hash=sha256:75bb3f31ea686f1197762692a9ee6a7550b59fc6ca3a1f4b5d7e32fb98e2da2a
-python-stdnum==1.15 \
-    --hash=sha256:ff0e4d2b8731711cf2a73d22964139208088b4bd1a3e3b0c4f78d6e823dd8923 \
-    --hash=sha256:46c05dff2d5ff89b12cc63ab54cca1e4788e4e3087c163a1b7434a53fa926f28
-pytz==2020.5 \
-    --hash=sha256:16962c5fb8db4a8f63a26646d8886e9d769b6c511543557bc84e9569fb9a9cb4 \
-    --hash=sha256:180befebb1927b16f6b57101720075a984c019ac16b1b7575673bea42c6c3da5
-requests==2.25.1 \
-    --hash=sha256:c210084e36a42ae6b9219e00e48287def368a26d03a048ddad7bfee44f75871e \
-    --hash=sha256:27973dd4a904a4f13b263a19c866c13b92a39ed1c964655f025f3f8d3d75b804
-requests-cache==0.5.2 \
-    --hash=sha256:813023269686045f8e01e2289cc1e7e9ae5ab22ddd1e2849a9093ab3ab7270eb \
-    --hash=sha256:81e13559baee64677a7d73b85498a5a8f0639e204517b5d05ff378e44a57831a
-six==1.15.0 \
-    --hash=sha256:8b74bedcbbbaca38ff6d7491d76f2b06b3592611af620f8426e82dddb04a5ced \
-    --hash=sha256:30639c035cdb23534cd4aa2dd52c3bf48f06e5f4a941509c8bafd8ce11080259
-urllib3==1.26.2 \
-    --hash=sha256:d8ff90d979214d7b4f8ce956e80f4028fc6860e4431f731ea4a8c08f23f99473 \
-    --hash=sha256:19188f96923873c92ccb987120ec4acaa12f0461fa9ce5d3d0772bc965a39e08
-xlrd==1.2.0 \
-    --hash=sha256:e551fb498759fa3a5384a94ccd4c3c02eb7c00ea424426e212ac0c57be9dfbde \
-    --hash=sha256:546eb36cee8db40c3eaa46c351e67ffee6eeb5fa2650b71bc4c758a29a1b29b2
+certifi==2020.12.5; python_version >= "2.7" and python_full_version < "3.0.0" or python_full_version >= "3.5.0"
+chardet==4.0.0; python_version >= "2.7" and python_full_version < "3.0.0" or python_full_version >= "3.5.0"
+colorama==0.4.4; (python_version >= "2.7" and python_full_version < "3.0.0") or (python_full_version >= "3.5.0")
+idna==2.10; python_version >= "2.7" and python_full_version < "3.0.0" or python_full_version >= "3.5.0"
+langid==1.1.6
+numpy==1.20.1; python_version >= "3.7" and python_full_version >= "3.7.1"
+pandas==1.2.2; python_full_version >= "3.7.1"
+pycountry==19.8.18
+python-dateutil==2.8.1; python_full_version >= "3.7.1"
+python-stdnum==1.16
+pytz==2021.1; python_full_version >= "3.7.1"
+requests-cache==0.5.2
+requests==2.25.1; (python_version >= "2.7" and python_full_version < "3.0.0") or (python_full_version >= "3.5.0")
+six==1.15.0; python_full_version >= "3.7.1"
+urllib3==1.26.3; python_version >= "2.7" and python_full_version < "3.0.0" or python_full_version >= "3.5.0" and python_version < "4"
+xlrd==1.2.0; (python_version >= "2.7" and python_full_version < "3.0.0") or (python_full_version >= "3.4.0")
--- a/setup.py
+++ b/setup.py
@@ -14,7 +14,7 @@ install_requires = [

 setuptools.setup(
    name="csv-metadata-quality",
-    version="0.4.2",
+    version="0.4.3",
    author="Alan Orth",
    author_email="aorth@mjanja.ch",
    description="A simple, but opinionated CSV quality checking and fixing pipeline for CSVs in the DSpace ecosystem.",
@@ -23,7 +23,6 @@ setuptools.setup(
    long_description_content_type="text/markdown",
    url="https://github.com/alanorth/csv-metadata-quality",
    classifiers=[
-        "Programming Language :: Python :: 3.6",
        "Programming Language :: Python :: 3.7",
        "Programming Language :: Python :: 3.8",
        "Programming Language :: Python :: 3.9",
--- a/tests/test_check.py
+++ b/tests/test_check.py
@@ -1,4 +1,5 @@
 import pandas as pd
+from colorama import Fore

 import csv_metadata_quality.check as check
 import csv_metadata_quality.experimental as experimental
@@ -12,7 +13,7 @@ def test_check_invalid_issn(capsys):
    check.issn(value)

    captured = capsys.readouterr()
-    assert captured.out == f"Invalid ISSN: {value}\n"
+    assert captured.out == f"{Fore.RED}Invalid ISSN: {Fore.RESET}{value}\n"


 def test_check_valid_issn():
@@ -33,7 +34,7 @@ def test_check_invalid_isbn(capsys):
    check.isbn(value)

    captured = capsys.readouterr()
-    assert captured.out == f"Invalid ISBN: {value}\n"
+    assert captured.out == f"{Fore.RED}Invalid ISBN: {Fore.RESET}{value}\n"


 def test_check_valid_isbn():
@@ -56,7 +57,10 @@ def test_check_invalid_separators(capsys):
    check.separators(value, field_name)

    captured = capsys.readouterr()
-    assert captured.out == f"Invalid multi-value separator ({field_name}): {value}\n"
+    assert (
+        captured.out
+        == f"{Fore.RED}Invalid multi-value separator ({field_name}): {Fore.RESET}{value}\n"
+    )


 def test_check_unnecessary_separators(capsys):
@@ -70,7 +74,8 @@ def test_check_unnecessary_separators(capsys):

    captured = capsys.readouterr()
    assert (
-        captured.out == f"Unnecessary multi-value separator ({field_name}): {field}\n"
+        captured.out
+        == f"{Fore.RED}Unnecessary multi-value separator ({field_name}): {Fore.RESET}{field}\n"
    )


@@ -96,7 +101,7 @@ def test_check_missing_date(capsys):
    check.date(value, field_name)

    captured = capsys.readouterr()
-    assert captured.out == f"Missing date ({field_name}).\n"
+    assert captured.out == f"{Fore.RED}Missing date ({field_name}).{Fore.RESET}\n"


 def test_check_multiple_dates(capsys):
@@ -109,7 +114,10 @@ def test_check_multiple_dates(capsys):
    check.date(value, field_name)

    captured = capsys.readouterr()
-    assert captured.out == f"Multiple dates not allowed ({field_name}): {value}\n"
+    assert (
+        captured.out
+        == f"{Fore.RED}Multiple dates not allowed ({field_name}): {Fore.RESET}{value}\n"
+    )


 def test_check_invalid_date(capsys):
@@ -122,7 +130,9 @@ def test_check_invalid_date(capsys):
    check.date(value, field_name)

    captured = capsys.readouterr()
-    assert captured.out == f"Invalid date ({field_name}): {value}\n"
+    assert (
+        captured.out == f"{Fore.RED}Invalid date ({field_name}): {Fore.RESET}{value}\n"
+    )


 def test_check_valid_date():
@@ -147,7 +157,10 @@ def test_check_suspicious_characters(capsys):
    check.suspicious_characters(value, field_name)

    captured = capsys.readouterr()
-    assert captured.out == f"Suspicious character ({field_name}): ˆt\n"
+    assert (
+        captured.out
+        == f"{Fore.YELLOW}Suspicious character ({field_name}): {Fore.RESET}ˆt\n"
+    )


 def test_check_valid_iso639_1_language():
@@ -178,7 +191,9 @@ def test_check_invalid_iso639_1_language(capsys):
    check.language(value)

    captured = capsys.readouterr()
-    assert captured.out == f"Invalid ISO 639-1 language: {value}\n"
+    assert (
+        captured.out == f"{Fore.RED}Invalid ISO 639-1 language: {Fore.RESET}{value}\n"
+    )


 def test_check_invalid_iso639_3_language(capsys):
@@ -189,7 +204,9 @@ def test_check_invalid_iso639_3_language(capsys):
    check.language(value)

    captured = capsys.readouterr()
-    assert captured.out == f"Invalid ISO 639-3 language: {value}\n"
+    assert (
+        captured.out == f"{Fore.RED}Invalid ISO 639-3 language: {Fore.RESET}{value}\n"
+    )


 def test_check_invalid_language(capsys):
@@ -200,7 +217,7 @@ def test_check_invalid_language(capsys):
    check.language(value)

    captured = capsys.readouterr()
-    assert captured.out == f"Invalid language: {value}\n"
+    assert captured.out == f"{Fore.RED}Invalid language: {Fore.RESET}{value}\n"


 def test_check_invalid_agrovoc(capsys):
@@ -212,7 +229,10 @@ def test_check_invalid_agrovoc(capsys):
    check.agrovoc(value, field_name)

    captured = capsys.readouterr()
-    assert captured.out == f"Invalid AGROVOC ({field_name}): {value}\n"
+    assert (
+        captured.out
+        == f"{Fore.RED}Invalid AGROVOC ({field_name}): {Fore.RESET}{value}\n"
+    )


 def test_check_valid_agrovoc():
@@ -234,7 +254,10 @@ def test_check_uncommon_filename_extension(capsys):
    check.filename_extension(value)

    captured = capsys.readouterr()
-    assert captured.out == f"Filename with uncommon extension: {value}\n"
+    assert (
+        captured.out
+        == f"{Fore.YELLOW}Filename with uncommon extension: {Fore.RESET}{value}\n"
+    )


 def test_check_common_filename_extension():
@@ -262,7 +285,7 @@ def test_check_incorrect_iso_639_1_language(capsys):
    captured = capsys.readouterr()
    assert (
        captured.out
-        == f"Possibly incorrect language {language} (detected en): {title}\n"
+        == f"{Fore.YELLOW}Possibly incorrect language {language} (detected en): {Fore.RESET}{title}\n"
    )


@@ -281,7 +304,7 @@ def test_check_incorrect_iso_639_3_language(capsys):
    captured = capsys.readouterr()
    assert (
        captured.out
-        == f"Possibly incorrect language {language} (detected eng): {title}\n"
+        == f"{Fore.YELLOW}Possibly incorrect language {language} (detected eng): {Fore.RESET}{title}\n"
    )
Author	SHA1	Message	Date
Alan Orth	d76e72532a	Move unreleased changes to v0.4.4 All checks were successful continuous-integration/drone/push Build is passing Details	2021-02-21 13:25:22 +02:00
Alan Orth	13980d2dde	CHANGELOG.md: Add note about colored output	2021-02-21 13:12:26 +02:00
Alan Orth	9aaaa62461	Update requirements All checks were successful continuous-integration/drone/push Build is passing Details Generated with poetry export: $ poetry export --without-hashes -f requirements.txt > requirements.txt $ poetry export --without-hashes --dev -f requirements.txt > requirements-dev.txt I am trying `--without-hashes` to work around an error on pip install when running in CI: ERROR: In --require-hashes mode, all requirements must have their versions pinned with ==.	2021-02-21 13:10:52 +02:00
Alan Orth	a7fc5a246c	Colorize output Some checks failed continuous-integration/drone/push Build is failing Details Messages will be colorized: - Red for errors - Yellow for warnings or information - Green for fixes	2021-02-21 13:01:25 +02:00
Alan Orth	7fb8acb866	Add colorama for colored output Red for errors, yellow for warnings or information, and green for fixes.	2021-02-21 13:00:31 +02:00
Alan Orth	9f5d2c2c4f	poetry.lock: Run poetry update All checks were successful continuous-integration/drone/push Build is passing Details	2021-02-15 15:13:12 +02:00
Alan Orth	202abf140c	CHANGELOG.md: Add note about poetry All checks were successful continuous-integration/drone/push Build is passing Details	2021-02-04 21:48:12 +02:00
Alan Orth	0cd6d3dfe6	Update requirements Generated with poetry export: $ poetry export --without-hashes -f requirements.txt > requirements.txt $ poetry export --without-hashes --dev -f requirements.txt > requirements-dev.txt I am trying `--without-hashes` to work around an error on pip install when running in CI: ERROR: In --require-hashes mode, all requirements must have their versions pinned with ==.	2021-02-04 21:46:49 +02:00
Alan Orth	a458beac55	poetry.lock: Run poetry update	2021-02-04 21:45:30 +02:00
Alan Orth	e62ecb0a8f	CHANGELOG.md: Add note about new date format	2021-02-04 21:43:44 +02:00
Alan Orth	de92f32ab6	csv_metadata_quality/check.py: More date formats We should also allow ISO 8601 extended in combined date and time format. DSpace does not have a problem with dates in this format and I have found some metadata that uses this date format. For example: 2020-08-31T11:04:56Z See: https://en.wikipedia.org/wiki/ISO_8601	2021-02-04 21:39:14 +02:00
Alan Orth	dbbbc0944a	README.md: Add handle to citation All checks were successful continuous-integration/drone/push Build is passing Details	2021-01-27 10:33:37 +02:00
Alan Orth	d17bf3033c	README.md: Add citation	2021-01-27 10:32:26 +02:00
Alan Orth	2ec52f1b73	README.md: Update description All checks were successful continuous-integration/drone/push Build is passing Details	2021-01-26 15:43:41 +02:00
Alan Orth	aa1abf15a7	README.md: Adjust title	2021-01-26 15:35:21 +02:00
Alan Orth	cbf94490f2	Version 0.4.3	2021-01-26 15:22:40 +02:00
Alan Orth	f3d0d5ef07	setup.py: Remove Python 3.6 I actually removed Python 3.6 support a few weeks ago after updating to Pandas 1.2.0, but forgot to update this.	2021-01-26 15:22:08 +02:00
Alan Orth	4b7b99c94c	CHANGELOG.md: Add note about multi-value separators	2021-01-26 15:20:22 +02:00
Alan Orth	df670e81b9	README.md: Use badge from my Drone CI All checks were successful continuous-integration/drone/push Build is passing Details I'm not using SourceHut anymore.	2021-01-26 14:38:50 +02:00
Alan Orth	ae357d8c6c	Revert "Update requirements" This reverts commit `ca80340f7a`. Nope, we still need the --without-hashes because this still fails on Python 3.7, but not 3.8 or 3.9. From looking around it seems that nobody can agree whether poetry should handle this, pip should handle it, or upstream projects should pin their dependencies.	2021-01-26 14:15:31 +02:00