alanorth/csv-metadata-quality
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Author SHA1 Message Date
Alan Orth
8fb40d96b1
Pipfile: Add pytest-clarity to dev packages 
This helps you understand the cryptic assertion error output from
pytest. For some reason pytest-clarity is a pre-release package so
we need to install it in pipenv with --pre.
 2019-08-09 01:30:37 +03:00
Alan Orth
5f2e3ff4bd
CHANGELOG.md: Add improved suspicious character check 2019-08-09 01:28:07 +03:00
Alan Orth
d93c2aae13
tests/test_check.py: Update suspicious character check 
The suspicious character check was updated to include the name of
the field where the metadata value with the  suspicious character
exists.
 2019-08-09 01:26:38 +03:00
Alan Orth
62fea95087
Improve suspicious character detection 
Now it will print just the part of the metadata value that contains
the suspicious character (up to 80 characters, so we don't make the
line break on terminals that use 80 character width by default).

Also, print the name of the field in which the metadata value is so
that it is easier for the user to locate.
 2019-08-09 01:25:40 +03:00
Alan Orth
8772bdec51
csv_metadata_quality/app.py: Explicitly exit with success 2019-08-04 09:10:37 +03:00
Alan Orth
6d4ecd75aa
csv_metadata_quality/app.py: Close files before exit 2019-08-04 09:10:19 +03:00
Alan Orth
264ce1d1df
CHANGELOG.md: Add new item for Ctrl-C handling 2019-08-03 22:18:44 +03:00
Alan Orth
f4e7fd73f5
csv_metadata_quality/app.py: Handle Ctrl-C 
Instead of printing an ugly two-page stack trace.
 2019-08-03 21:11:57 +03:00
Alan Orth
a00d3d7ea5
README.md: Simplify installation instructions 
Pipenv has captured the local dependency with `-e .` so now it gets
installed by the Pipfile or requirements.txt.
 2019-08-02 11:02:50 +03:00
Alan Orth
f772a3be41
Update python requirements 
Generated using pipenv:

  $ pipenv lock -r > requirements.txt
 2019-08-02 11:02:25 +03:00
Alan Orth
d1b3e9e375
pipenv install -e . 2019-08-02 10:58:21 +03:00
Alan Orth
85ae7bdc5a
Increment version to 0.1.0 2019-08-02 00:12:47 +03:00
Alan Orth
980ef0d98d
Add initial changelog 2019-08-02 00:10:28 +03:00
Alan Orth
0561300ebe
Add option to print version with --version or -V 
I guess `-v` is more commonly used for "verbose" so I will use the
short option of `-V` for version.
 2019-08-02 00:09:54 +03:00
Alan Orth
456b8a2f26
Update tests 2019-08-01 23:59:11 +03:00
Alan Orth
0ed390dbd5
README.md: Update AGROVOC information 
Now details the new `--agrovoc-fields` option.
 2019-08-01 23:54:40 +03:00
Alan Orth
bf876a046a
Rework AGROVOC validation 
AGROVOC validation is now disabled by default, but can be enabled
on a field-by-field basis. For example, countries and regions are
also present in AGROVOC. Fields with these values can be enabled
using the new `--agrovoc-fields` option.

I reworked the script output to show the field name when printing
an invalid term so that the user knows in which field the term is.
 2019-08-01 23:51:58 +03:00
Alan Orth
576b3a3638
csv_metadata_quality/__main__.py: Fix spacing 
Identified by flake8.
 2019-08-01 23:28:16 +03:00
Alan Orth
a6eba0fc1a
.build.yml: Use pipenv run instead of pipenv shell 
The latter creates a shell and of course it doesn't ever exit!
 2019-07-31 17:58:21 +03:00
Alan Orth
857492cd93
.build.yml: Try fix CLI test 
I was writing the CLI output to /dev/null because I was lazy, but
actually this might break the SourceHut build.
 2019-07-31 17:54:49 +03:00
Alan Orth
db42fbfea9
.build.yml: Try to run the script itself 2019-07-31 17:48:17 +03:00
Alan Orth
734ae7f011
setup.py: Add "DSpace" to description 
I suppose someone searching PyPi (eventually) would be happy to see
that this was written specifically with DSpace in mind.
 2019-07-31 17:42:27 +03:00
Alan Orth
fd3861e7cd
README.md: Update installation and usage instructions 
It is much easier now that I have created a proper package.
 2019-07-31 17:41:18 +03:00
Alan Orth
cec1a34dfe
.gitignore: Ignore egg cache from distutils 2019-07-31 17:38:54 +03:00
Alan Orth
9100efdf50
Re-work as a proper standalone Python package 
Add a setup.py so that installation is easier and a standalone CLI
script called csv-metadata-quality is provided. Now the user only
needs to run this from a virtual environment inside the project
directory:

    $ pip install .

Eventually I could publish this on PyPi when I settle on a more
appropriate package name.

See: https://packaging.python.org/tutorials/packaging-projects/
See: https://chriswarrick.com/blog/2014/09/15/python-apps-the-right-way-entry_points-and-scripts/
 2019-07-31 17:34:36 +03:00
Alan Orth
4c4f4a3ba2
README.md: Update todos 2019-07-31 16:33:49 +03:00
Alan Orth
22cc7bc793
README.md: Improve section on unsafe fixes 2019-07-31 16:00:05 +03:00
Alan Orth
915327539a
pytest.ini: Ignore deprecation warnings 
These come from third-party libraries I have no control over.

See: https://docs.pytest.org/en/latest/warnings.html#deprecationwarning-and-pendingdeprecationwarning
 2019-07-31 13:33:20 +03:00
Alan Orth
63ffd77723
data/test.csv: Clarify that newline is a line feed 2019-07-31 13:03:43 +03:00
Alan Orth
b9d041927e
Update python requirements 
Generated using pipenv:

  $ pipenv lock -r > requirements.txt
  $ pipenv lock -r -d > requirements-dev.txt
 2019-07-30 23:06:26 +03:00
Alan Orth
020c87768e
data/test.csv: Add item with missing date 2019-07-30 21:02:51 +03:00
Alan Orth
abf74909ee
data/test.csv: Add missing date 
I was meaning to test for an invalid multi-value separator here!
 2019-07-30 21:01:42 +03:00
Alan Orth
40d5f7d81b
Add support for removing newlines 
This was tricky because of the nature of newlines. In actuality we
are removing Unix line feeds here (U+000A) because Windows carriage
returns are actually already removed by the string stripping in the
whitespace fix.

Creating the test case in Vim was difficult because I couldn't fig-
ure out how to manually enter a line feed character. In the end I
used a search and replace on a known pattern like "ALAN", replacing
it with \r. Neither entering the Unicode code point (U+000A) direc-
tly or typing an "Enter" character after ^V worked. Grrr.
 2019-07-30 20:05:12 +03:00
Alan Orth
346e66ca98
README.md: Add more information to introduction 2019-07-30 17:44:30 +03:00
Alan Orth
bad2fce124
pytest.ini: Don't print captured output 
It makes the summary of passes and fails more annoying to read due
to the lines being long and including newlines. I am actually not
sure why this fixes it, though...

See: https://pytest.readthedocs.io/en/latest/capture.html
 2019-07-30 16:43:31 +03:00
Alan Orth
3c798fb504
Use pycountry instead of iso-639 for languages 
The latter is a fork that hasn't been updated since 2016 and the
original still seems to be well maintained, with recent database
updates as well as tests for Python 3.7.

Also, pycountry supports ISO 3166-2 (administrative zones), which
we could eventually use for sub regions.
 2019-07-30 16:39:26 +03:00
Alan Orth
a85b410ab9
README.md: Improve introduction and functionality 2019-07-30 16:09:15 +03:00
Alan Orth
4e3511cd55
csv_metadata_quality/check.py: Fix AGROVOC lookup 
We actually only need to see if there are more than zero matches
because a term like "Nigeria" will match in English, Spanish, etc,
whereas terms that *really* don't match will have zero results.
 2019-07-30 14:51:44 +03:00
Alan Orth
1fd3d8bc2f
Add pytest.ini from responder 
This seems to be produce a more informative output, though I'm not
sure how to filter the annoying deprecation warnings pytest throws
about things that are usually done by modules I'm using, not by me.

From: https://github.com/taoufik07/responder/blob/master/pytest.ini
 2019-07-30 00:45:18 +03:00
Alan Orth
b4aaffd6f1
Update python requirements 
Generated using pipenv:

  $ pipenv lock -r > requirements.txt
 2019-07-30 00:34:32 +03:00
Alan Orth
5ea2e856e4
data/test.csv: Add dc.subject column for AGROVOC tests 2019-07-30 00:33:31 +03:00
Alan Orth
1f65a28307
Add support for validating subjects against AGROVOC 
Checks values in the dc.subject or dcterms.subject field against the
AGROVOC REST API hosted by FAO. Code borrowed from agrovoc-lookup.py.

See: http://agrovoc.uniroma2.it/agrovoc/agrovoc/en/
See: https://github.com/ilri/DSpace/blob/5_x-prod/agrovoc-lookup.py
 2019-07-30 00:30:31 +03:00
Alan Orth
bb882315f1
Update python requirements 
Generated using pipenv:

  $ pipenv lock -r > requirements.txt
  $ pipenv lock -r -d > requirements-dev.txt
 2019-07-29 19:10:49 +03:00
Alan Orth
a36454a3ac
Add support for validating languages 
Will validate against ISO 639-2 or ISO 639-3 depending on how long
the language field is. Otherwise will return that the language is
invalid.

Does not currently have any support for generic values like "Other".
 2019-07-29 18:59:42 +03:00
Alan Orth
1978fa7b48
Add iso-639 library to validate languages 2019-07-29 18:58:50 +03:00
Alan Orth
e49b4e8f22
README.md: Try to simplify list of functionality 2019-07-29 18:25:38 +03:00
Alan Orth
0eb852a65b
README.md: Improve note about unsafe options 2019-07-29 18:14:50 +03:00
Alan Orth
8d92498bbf
Add .gitignore 2019-07-29 18:10:29 +03:00
Alan Orth
8c34c2d6e6
README.md: Add note about removing duplicate values 2019-07-29 18:09:48 +03:00
Alan Orth
1e444cf040
Add fix for duplicate metadata values 2019-07-29 18:05:03 +03:00