1
0
mirror of https://github.com/ilri/csv-metadata-quality.git synced 2024-11-22 05:45:02 +01:00
A simple but opinionated metadata quality checker and fixer designed to work with CSVs in the DSpace ecosystem.
Go to file
Alan Orth a36454a3ac
Add support for validating languages
Will validate against ISO 639-2 or ISO 639-3 depending on how long
the language field is. Otherwise will return that the language is
invalid.

Does not currently have any support for generic values like "Other".
2019-07-29 18:59:42 +03:00
csv_metadata_quality Add support for validating languages 2019-07-29 18:59:42 +03:00
data Add support for validating languages 2019-07-29 18:59:42 +03:00
tests Add support for validating languages 2019-07-29 18:59:42 +03:00
.build.yml .build.yml: Fix setup script 2019-07-27 00:41:57 +03:00
.flake8 Add flake8 to pipenv dev environment 2019-07-28 17:46:30 +03:00
.gitignore Add .gitignore 2019-07-29 18:10:29 +03:00
.travis.yml .travis.yml: Only test Python 3.6 and 3.7 2019-07-29 12:13:55 +03:00
LICENSE.txt Add GPLv3 license 2019-07-26 22:16:16 +03:00
Pipfile Add iso-639 library to validate languages 2019-07-29 18:58:50 +03:00
Pipfile.lock Add iso-639 library to validate languages 2019-07-29 18:58:50 +03:00
README.md Add support for validating languages 2019-07-29 18:59:42 +03:00
requirements-dev.txt Update python requirements 2019-07-28 17:12:20 +03:00
requirements.txt Update python requirements 2019-07-28 17:12:20 +03:00

CSV Metadata Quality Build Status builds.sr.ht status

A simple but opinionated metadata quality checker and fixer designed to work with CSVs in the DSpace ecosystem. Supports multi-value fields using the standard DSpace value separator ("||"). Despite the name it does support reading Excel files.

Requires Python 3.6 or greater. CSV and Excel support comes from the Pandas library.

Functionality

  • Read/write CSV files
  • Read Excel files
  • Validate dates, ISSNs, ISBNs, and multi-value separators ("||")
  • Validate languages against ISO 639-2 and ISO 639-3
  • Fix leading, trailing, and excessive whitespace
  • Fix invalid multi-value separators (|) using --unsafe-fixes
  • Remove unnecessary Unicode like non-breaking spaces, replacement characters, etc
  • Check for "suspicious" characters that indicate encoding or copy/paste issues, for example "foreˆt" should be "forêt"
  • Remove duplicate metadata values

Installation

The easiest way to install CSV Metadata Quality is with pipenv:

$ git clone https://git.sr.ht/~alanorth/csv-metadata-quality
$ cd csv-metadata-quality
$ pipenv install
$ pipenv shell

Otherwise, if you don't have pipenv, you can use a vanilla Python virtual environment:

$ git clone https://git.sr.ht/~alanorth/csv-metadata-quality
$ cd csv-metadata-quality
$ python3 -m venv venv
$ source venv/bin/activate
$ pip install -r requirements.txt

Usage

Run CSV Metadata Quality with the --help flag to see available options:

$ python -m csv_metadata_quality --help

To validate and clean a CSV file you must specify input and output files using the -i and -o options. For example, using the included test file:

$ python -m csv_metadata_quality -i data/test.csv -o /tmp/test.csv

You can enable "unsafe fixes" with the --unsafe-fixes option. Currently this will attempt to fix things like invalid multi-value separators (|). This is considered "unsafe" because it's theoretically possible for the | to be used legitimately in a metadata value, but in my experience it's always a typo where the user was attempting to use multiple metadata values, for example: Kenya|Tanzania.

Todo

  • Reporting / summary
  • Real logging

License

This work is licensed under the GPLv3.

The license allows you to use and modify the work for personal and commercial purposes, but if you distribute the work you must provide users with a means to access the source code for the version you are distributing. Read more about the GPLv3 at TL;DR Legal.