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mirror of https://github.com/ilri/csv-metadata-quality.git synced 2024-11-24 06:40:17 +01:00
Commit Graph

644 Commits

Author SHA1 Message Date
e81ae93bf0
poetry.lock: run poetry update 2022-12-13 10:44:06 +03:00
50ea5863dd
.drone.yml: only test on Python 3.9+ 2022-12-13 10:43:18 +03:00
2dfb073b6b
Update minimum Python version to 3.9
Due to importlib.resources.files. It's a very minor thing and there
are ways to use back-ported third-party modules with this function-
ality, but I'm the only one use this so...

See: https://docs.python.org/3/library/importlib.resources.html#importlib.resources.files
2022-12-13 10:41:32 +03:00
7cc49b500d
Use licenses.json from SPDX instead of spdx-license-list
spdx-license-list has been deprecated[1] and already has outdated
information compared to recent SPDX data releases. Now I use the
JSON license data directly from SPDX[2] (currently version 3.19).

The JSON file is loaded from the package's data directory using
Python 3's stdlib functions from importlib[3], though we now need
Python 3.9 as a minimum for importlib.resources.files[4].

Also note that the data directory is not properly packaged via
setuptools, so this only works for local installs, and not via
versions published to pypi, for example (I'm currently not doing
this anyways). If I want to publish this in the future I will
need to modify setup.py/pyproject.toml to include the data files.

[1] https://gitlab.com/uniqx/spdx-license-list
[2] https://github.com/spdx/license-list-data/blob/main/json/licenses.json
[3] https://copdips.com/2022/09/adding-data-files-to-python-package-with-setup-py.html
[4] https://docs.python.org/3/library/importlib.resources.html#importlib.resources.files
2022-12-13 10:39:17 +03:00
051777bcec
Ignore subregion field for missing region checks
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Due to a sloppy regex I was sometimes matching the subregion field
when checking for missing UN M.49 regions in the region field.
2022-12-07 23:18:47 +01:00
58e956360a
Add tests/test_check.py: fix test
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2022-11-28 22:12:17 +03:00
3532175748
.drone.yml: install git
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Apparently the slim images don't come with git, which we need for
cloning some dependencies.
2022-11-28 22:05:34 +03:00
a7bc929af8
Update requirements
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continuous-integration/drone/push Build is failing
Generated with poetry export:

    $ poetry export --without-hashes -f requirements.txt > requirements.txt
    $ poetry export --without-hashes --with dev -f requirements.txt > requirements-dev.txt

I am trying `--without-hashes` to work around an error on pip install
when running in CI:

    ERROR: In --require-hashes mode, all requirements must have their versions pinned with ==
2022-11-28 17:42:26 +03:00
141b2e1da3
csv_metadata_quality/check.py: update region output
Add the country to the message about missing regions. This makes it
easier to see which country is triggering the missing region error,
and helps in case of debugging possible mistakes in the data coming
from the country_converter library.
2022-11-28 17:40:27 +03:00
7097136b7e
Use my fork of country_converter again
There is an issue with the UN M.49 region for Myanmar.
2022-11-28 17:38:45 +03:00
d134c93663
Update requirements
Generated with poetry export:

    $ poetry export --without-hashes -f requirements.txt > requirements.txt
    $ poetry export --without-hashes --with dev -f requirements.txt > requirements-dev.txt

I am trying `--without-hashes` to work around an error on pip install
when running in CI:

    ERROR: In --require-hashes mode, all requirements must have their versions pinned with ==
2022-11-28 17:16:09 +03:00
9858406894
poetry.lock: run poetry update 2022-11-28 17:15:19 +03:00
b02f1f65ee
pyproject.toml: use upstream country_converter
Version 0.8.0 has the country and UN M.49 region fixes.

See: https://github.com/konstantinstadler/country_converter/releases/tag/v0.8.0
2022-11-28 17:14:16 +03:00
4d5ef38dde
pyproject.toml: add ipython to dev dependencies 2022-11-28 17:11:18 +03:00
eaa8f31faf
Update requirements
Some checks failed
continuous-integration/drone/push Build is failing
Generated with poetry export:

    $ poetry export --without-hashes -f requirements.txt > requirements.txt
    $ poetry export --without-hashes --with dev -f requirements.txt > requirements-dev.txt

I am trying `--without-hashes` to work around an error on pip install
when running in CI:

    ERROR: In --require-hashes mode, all requirements must have their versions pinned with ==
2022-11-08 10:22:39 +03:00
df57988e5a
Use my fork of pycountry
Until they update to iso-codes 4.12.0.

See: https://github.com/flyingcircusio/pycountry/pull/149
2022-11-08 10:21:28 +03:00
bddf4da559
Update requirements
Generated with poetry export:

    $ poetry export --without-hashes -f requirements.txt > requirements.txt
    $ poetry export --without-hashes --with dev -f requirements.txt > requirements-dev.txt

I am trying `--without-hashes` to work around an error on pip install
when running in CI:

    ERROR: In --require-hashes mode, all requirements must have their versions pinned with ==
2022-11-08 10:06:26 +03:00
15f52f8be8
Switch to my fork of country-converter
Until a few issues are resolved regarding new countries and regions.

See: https://github.com/konstantinstadler/country_converter/pull/122
See: https://github.com/konstantinstadler/country_converter/pull/123
2022-11-08 10:04:31 +03:00
bc909464c7
Update requirements
All checks were successful
continuous-integration/drone/push Build is passing
Generated with poetry export:

    $ poetry export --without-hashes -f requirements.txt > requirements.txt
    $ poetry export --without-hashes --with dev -f requirements.txt > requirements-dev.txt

I am trying `--without-hashes` to work around an error on pip install
when running in CI:

    ERROR: In --require-hashes mode, all requirements must have their versions pinned with ==
2022-11-07 12:14:46 +03:00
2d46259dfe
poetry.lock: run poetry update 2022-11-07 12:13:44 +03:00
ca82820a8e
pyproject.toml: update dependencies to latest 2022-11-07 12:13:28 +03:00
86b4e5e182
Update requirements
All checks were successful
continuous-integration/drone/push Build is passing
Generated with poetry export:

    $ poetry export --without-hashes -f requirements.txt > requirements.txt
    $ poetry export --without-hashes --with dev -f requirements.txt > requirements-dev.txt

I am trying `--without-hashes` to work around an error on pip install
when running in CI:

    ERROR: In --require-hashes mode, all requirements must have their versions pinned with ==
2022-11-01 12:21:41 +03:00
e5d5ae7e5d
poetry.lock: run poetry update 2022-11-01 12:20:43 +03:00
8f3db86a36
CHANGELOG.md: fix header
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2022-10-31 11:43:14 +03:00
b0721b0a7a
.github: use ubuntu-22.04 for actions
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continuous-integration/drone/push Build is passing
Apparently 'ubuntu-latest' is still 20.04 and today is 2022-10-03,
which seems a bit old!

See: https://github.com/actions/runner-images
2022-10-03 19:49:24 +03:00
4e5faf51bd .github/workflows: use pip caching
See: https://github.com/actions/setup-python/blob/main/docs/advanced-usage.md#caching-packages
2022-10-03 19:39:52 +03:00
5ea38d65bd .github/workflows: update actions
Update actions to latest versions:

- actions/checkout@v3
- actions/setup-python@v4
2022-10-03 19:39:52 +03:00
58b7b6e9d8
Version 0.6.0
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2022-09-02 16:35:58 +03:00
ffdf1eca7b
setup.py: remove Python 3.7 support
I had already set the minimum to Python 3.8 elsewhere, but forgot
to do it here. I am not sure if Python 3.7 will still work here or
not so let's just keep it in sync with the other docs.
2022-09-02 16:34:16 +03:00
59742e47f1
Update requirements
Generated with poetry export:

    $ poetry export --without-hashes -f requirements.txt > requirements.txt
    $ poetry export --without-hashes --with dev -f requirements.txt > requirements-dev.txt

I am trying `--without-hashes` to work around an error on pip install
when running in CI:

    ERROR: In --require-hashes mode, all requirements must have their versions pinned with ==
2022-09-02 16:32:04 +03:00
9c741b1d49
poetry.lock: sync latest deps 2022-09-02 16:31:19 +03:00
21e9948a75
pyproject.toml: manually updated all deps
Update all deps to their latest versions on pypi.org and remove the
explicit dependency on SQLAlchemy.
2022-09-02 16:30:40 +03:00
f64435fc9d
tests/test_check.py: add missing excludes 2022-09-02 16:24:33 +03:00
566c2b45cf
Remove Excel support
I never used this and it seems xlrd doesn't even support .xlsx any-
more anyways. If this was needed I could theoretically use openpyxl
but I'd rather just stick to CSV.
2022-09-02 16:14:24 +03:00
41b813be6e
CHANGELOG.md: add not about exclude logic 2022-09-02 16:03:51 +03:00
040e56fc76
Improve exclude function
When a user explicitly requests that a field be excluded with -x we
skip that field in most checks. Up until now that did not include
the item-based checks using a transposed dataframe because we don't
know the metadata field names (labels) until we iterate over them.

Now the excludes are respected for item-based checks.
2022-09-02 15:59:22 +03:00
1f76247353
csv_metadata_quality/app.py: rework exclude/skip
Instead of processing the excludes inside the for column loop we do
it once before and then only need to check if the current column is
in the list.
2022-09-02 10:35:04 +03:00
2e489fc921
Add new data/test-geography.csv test file
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continuous-integration/drone/push Build is passing
This file has metadata to test different scenarios related to chec-
king and fixing missing regions.
2022-09-01 16:57:29 +03:00
117c6ca85d
csv_metadata_quality/check.py: missing region fixes
Port over the recent fixes and logic improvements to regions from
fix.py.
2022-09-01 16:38:35 +03:00
f49214fa2e
csv_metadata_quality/fix.py: fix bug in regions
We need to make sure we're only manipulating the regions if we have
any missing. The previous code was always manipulating the existing
row, even when there were no missing regions, which resulted in new
values like "Eastern Africa||".
2022-09-01 16:15:32 +03:00
7ce20726d0
csv_metadata_quality/fix.py: minor change
Print missing regions when we know they are missing, instead of do-
ing another check later and looping over them again.
2022-09-01 16:03:49 +03:00
473be5ac2f
csv_metadata_quality/fix.py: don't add "not found" region
country_converter returns the literal "not found" string if a coun-
try cannot be found. In that case we do not want to consider that as
a region!
2022-09-01 15:46:21 +03:00
7c61cae417 csv_metadata_quality/fix.py: silence warning
By default country_converter prints "not found in regex" if a coun-
try is not found. We can silence this by switching the logging lev-
el to something above WARNING.
2022-09-01 15:44:50 +03:00
ae16289637
csv_metadata_quality/fix.py: Minor change
The country_converter documentation says we should instantiate the
CountryConverter() class once instead of calling coco.convert() in
each iteration of the loop so we don't end up loading the data file
more than once.
2022-09-01 15:40:45 +03:00
fdb7900cd0
Update requirements
All checks were successful
continuous-integration/drone/push Build is passing
Generated with poetry export:

    $ poetry export --without-hashes -f requirements.txt > requirements.txt
    $ poetry export --without-hashes --with dev -f requirements.txt > requirements-dev.txt

I am trying `--without-hashes` to work around an error on pip install
when running in CI:

    ERROR: In --require-hashes mode, all requirements must have their versions pinned with ==
2022-09-01 11:21:10 +03:00
9c65569c43
poetry.lock: run poetry update 2022-09-01 08:44:12 +03:00
0cf0bc97f0
csv_metadata_quality/fix.py: fix logic error again
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continuous-integration/drone/push Build is passing
It seems there was another logic error raised by the test in pytest.
With my real data, it was enough to check if the region column was
None, but with my test I was explicitly setting the region to "" (an
empty string). So to be really sure we should check if the string
is not None *and* if its length is greater than 0.
2022-08-03 20:51:14 +03:00
40c3585bab
csv_metadata_quality/fix.py: fix logic error
Fix string concatenation with existing regions.
2022-08-03 18:26:08 +03:00
b9c44aed7d
csv_metadata_quality/fix.py: fix logic issue
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Forgot to return the row as-is if we don't find any countries.
2022-08-02 10:17:30 +03:00
032a1db392
README.md: Add note about missing regions
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2022-07-28 16:58:01 +03:00