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Ignore subregion field for missing region checks
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Due to a sloppy regex I was sometimes matching the subregion field when checking for missing UN M.49 regions in the region field.
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@ -4,6 +4,10 @@ All notable changes to this project will be documented in this file.
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The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/),
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and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
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## Unreleased
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### Fixed
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- Missing region check should ignore subregion field, if it exists
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## [0.6.0] - 2022-09-02
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### Changed
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- Perform fix for "unnecessary" Unicode characters after we try to fix encoding
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@ -512,9 +512,9 @@ def countries_match_regions(row, exclude):
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if match is not None:
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country_column_name = label
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# Find the name of the region column
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# Find the name of the region column, but make sure it's not subregion!
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match = re.match(r"^.*?region.*$", label)
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if match is not None:
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if match is not None and "sub" not in label:
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region_column_name = label
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# Find the name of the title column
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@ -327,9 +327,9 @@ def countries_match_regions(row, exclude):
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if match is not None:
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country_column_name = label
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# Find the name of the region column
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# Find the name of the region column, but make sure it's not subregion!
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match = re.match(r"^.*?region.*$", label)
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if match is not None:
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if match is not None and "sub" not in label:
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region_column_name = label
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# Find the name of the title column
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@ -1,38 +1,39 @@
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dc.title,dcterms.issued,dc.identifier.issn,dc.identifier.isbn,dcterms.language,dcterms.subject,cg.coverage.country,filename,dcterms.license,dcterms.type,dcterms.bibliographicCitation,cg.identifier.doi,cg.coverage.region
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Leading space,2019-07-29,,,,,,,,,,,
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Trailing space ,2019-07-29,,,,,,,,,,,
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Excessive space,2019-07-29,,,,,,,,,,,
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Miscellaenous ||whitespace | issues ,2019-07-29,,,,,,,,,,,
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Duplicate||Duplicate,2019-07-29,,,,,,,,,,,
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Invalid ISSN,2019-07-29,2321-2302,,,,,,,,,,
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Invalid ISBN,2019-07-29,,978-0-306-40615-6,,,,,,,,,
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Multiple valid ISSNs,2019-07-29,0378-5955||0024-9319,,,,,,,,,,
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Multiple valid ISBNs,2019-07-29,,99921-58-10-7||978-0-306-40615-7,,,,,,,,,
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Invalid date,2019-07-260,,,,,,,,,,,
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Multiple dates,2019-07-26||2019-01-10,,,,,,,,,,,
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Invalid multi-value separator,2019-07-29,0378-5955|0024-9319,,,,,,,,,,
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Unnecessary Unicode,2019-07-29,,,,,,,,,,,
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Suspicious character||foreˆt,2019-07-29,,,,,,,,,,,
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Invalid ISO 639-1 (alpha 2) language,2019-07-29,,,jp,,,,,,,,
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Invalid ISO 639-3 (alpha 3) language,2019-07-29,,,chi,,,,,,,,
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Invalid language,2019-07-29,,,Span,,,,,,,,
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Invalid AGROVOC subject,2019-07-29,,,,LIVESTOCK||FOREST,,,,,,,
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dc.title,dcterms.issued,dc.identifier.issn,dc.identifier.isbn,dcterms.language,dcterms.subject,cg.coverage.country,filename,dcterms.license,dcterms.type,dcterms.bibliographicCitation,cg.identifier.doi,cg.coverage.region,cg.coverage.subregion
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Leading space,2019-07-29,,,,,,,,,,,,
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Trailing space ,2019-07-29,,,,,,,,,,,,
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Excessive space,2019-07-29,,,,,,,,,,,,
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Miscellaenous ||whitespace | issues ,2019-07-29,,,,,,,,,,,,
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Duplicate||Duplicate,2019-07-29,,,,,,,,,,,,
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Invalid ISSN,2019-07-29,2321-2302,,,,,,,,,,,
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Invalid ISBN,2019-07-29,,978-0-306-40615-6,,,,,,,,,,
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Multiple valid ISSNs,2019-07-29,0378-5955||0024-9319,,,,,,,,,,,
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Multiple valid ISBNs,2019-07-29,,99921-58-10-7||978-0-306-40615-7,,,,,,,,,,
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Invalid date,2019-07-260,,,,,,,,,,,,
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Multiple dates,2019-07-26||2019-01-10,,,,,,,,,,,,
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Invalid multi-value separator,2019-07-29,0378-5955|0024-9319,,,,,,,,,,,
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Unnecessary Unicode,2019-07-29,,,,,,,,,,,,
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Suspicious character||foreˆt,2019-07-29,,,,,,,,,,,,
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Invalid ISO 639-1 (alpha 2) language,2019-07-29,,,jp,,,,,,,,,
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Invalid ISO 639-3 (alpha 3) language,2019-07-29,,,chi,,,,,,,,,
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Invalid language,2019-07-29,,,Span,,,,,,,,,
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Invalid AGROVOC subject,2019-07-29,,,,LIVESTOCK||FOREST,,,,,,,,
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Newline (LF),2019-07-30,,,,"TANZA
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NIA",,,,,,,
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Missing date,,,,,,,,,,,,
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Invalid country,2019-08-01,,,,,KENYAA,,,,,,
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Uncommon filename extension,2019-08-10,,,,,,file.pdf.lck,,,,,
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Unneccesary unicode (U+002D + U+00AD),2019-08-10,,978-92-9043-823-6,,,,,,,,,
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"Missing space,after comma",2019-08-27,,,,,,,,,,,
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Incorrect ISO 639-1 language,2019-09-26,,,es,,,,,,,,
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Incorrect ISO 639-3 language,2019-09-26,,,spa,,,,,,,,
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Composéd Unicode,2020-01-14,,,,,,,,,,,
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Decomposéd Unicode,2020-01-14,,,,,,,,,,,
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Unnecessary multi-value separator,2021-01-03,0378-5955||,,,,,,,,,,
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Invalid SPDX license identifier,2021-03-11,,,,,,,CC-BY,,,,
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Duplicate Title,2021-03-17,,,,,,,,Report,,,
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Duplicate Title,2021-03-17,,,,,,,,Report,,,
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Mojibake,2021-03-18,,,,Publicaçao CIAT,,,,Report,,,
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"DOI in citation, but missing cg.identifier.doi",2021-10-06,,,,,,,,,"Orth, A. 2021. DOI in citation, but missing cg.identifier.doi. doi: 10.1186/1743-422X-9-218",,
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Title missing from citation,2021-12-05,,,,,,,,,"Orth, A. 2021. Title missing f rom citation.",,
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Country missing region,2021-12-08,,,,,Kenya,,,,,,
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NIA",,,,,,,,
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Missing date,,,,,,,,,,,,,
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Invalid country,2019-08-01,,,,,KENYAA,,,,,,,
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Uncommon filename extension,2019-08-10,,,,,,file.pdf.lck,,,,,,
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Unneccesary unicode (U+002D + U+00AD),2019-08-10,,978-92-9043-823-6,,,,,,,,,,
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"Missing space,after comma",2019-08-27,,,,,,,,,,,,
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Incorrect ISO 639-1 language,2019-09-26,,,es,,,,,,,,,
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Incorrect ISO 639-3 language,2019-09-26,,,spa,,,,,,,,,
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Composéd Unicode,2020-01-14,,,,,,,,,,,,
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Decomposéd Unicode,2020-01-14,,,,,,,,,,,,
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Unnecessary multi-value separator,2021-01-03,0378-5955||,,,,,,,,,,,
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Invalid SPDX license identifier,2021-03-11,,,,,,,CC-BY,,,,,
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Duplicate Title,2021-03-17,,,,,,,,Report,,,,
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Duplicate Title,2021-03-17,,,,,,,,Report,,,,
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Mojibake,2021-03-18,,,,Publicaçao CIAT,,,,Report,,,,
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"DOI in citation, but missing cg.identifier.doi",2021-10-06,,,,,,,,,"Orth, A. 2021. DOI in citation, but missing cg.identifier.doi. doi: 10.1186/1743-422X-9-218",,,
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Title missing from citation,2021-12-05,,,,,,,,,"Orth, A. 2021. Title missing f rom citation.",,,
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Country missing region,2021-12-08,,,,,Kenya,,,,,,,
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Subregion field shouldn’t trigger region checks,2022-12-07,,,,,Kenya,,,,,,Eastern Africa,Baringo
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