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https://github.com/ilri/csv-metadata-quality-web.git
synced 2024-11-29 18:08:23 +01:00
Major refactor
Re-work upload and file processing so they are in the same Python function. Now I will start exposing other command line options in the form, like unsafe fixes, excluding fields, etc. Now I see tha t it is easier to save the POSTed file and process it in the same function so I don't have to pass around the other POSTed form val ues as URL query parameters. Now, as a result of changing the flow above, I also had to make a change to the way I show the results page. Instead of processing the file and returning the rendered results to the user directly, I process the file, save the rendered results to /tmp, and return a redirect to the user to the results page.
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79
main.py
79
main.py
@ -29,7 +29,7 @@ def index():
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@app.route("/", methods=["POST"])
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def upload_file():
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def process():
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uploaded_file = request.files["file"]
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filename = secure_filename(uploaded_file.filename)
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@ -43,42 +43,59 @@ def upload_file():
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# generate a base64 representation of the filename to use as a slug
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base64name = b64encode(filename.encode("ascii"))
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return redirect(url_for("process_file", base64slug=base64name))
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# do we need to use secure_filename again here?
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input_file = os.path.join(app.config["UPLOAD_PATH"], filename)
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# write output file with the same name as the input file plus "-cleaned"
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output_file = os.path.join(
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app.config["UPLOAD_PATH"], os.path.splitext(filename)[0] + "-cleaned.csv"
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)
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args = ["-i", input_file, "-o", output_file]
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if "unsafe" in request.form:
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args.append("-u")
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# run subprocess and capture output as UTF-8 so we get a string instead of
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# bytes for ansi2html
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results = subprocess.run(
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["csv-metadata-quality"] + args,
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capture_output=True,
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encoding="UTF-8",
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)
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# convert the output to HTML using ansi2html
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conv = Ansi2HTMLConverter()
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stdout_html = conv.convert(results.stdout)
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# render the results to HTML so we can save them for later and allowing
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# the user to share the results page without posting the file again. We
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# decode base64name before sending it to convert it from bytes to str.
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results_html = render_template(
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"result.html",
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cli_version=cli_version,
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filename=filename,
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stdout=stdout_html,
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base64name=base64name.decode("ascii"),
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)
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# save results to a file so it's easy to have a saved results page when
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# we don't know the options a user used to POST the form.
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results_html_file = os.path.join(
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app.config["UPLOAD_PATH"], base64name.decode("ascii")
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)
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with open(results_html_file, "w") as fh:
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fh.write(results_html)
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return redirect(url_for("results", base64slug=base64name))
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return "No file selected"
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@app.route("/result/<base64slug>")
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def process_file(base64slug):
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# get filename from base64-encoded slug
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filename = b64decode(base64slug).decode("ascii")
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def results(base64slug):
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results_html_file = os.path.join(app.config["UPLOAD_PATH"], base64slug)
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with open(results_html_file, "r") as fh:
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results_html = fh.read()
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# do we need to use secure_filename again here?
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input_file = os.path.join(app.config["UPLOAD_PATH"], filename)
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# write output file with the same name as the input file plus "-cleaned"
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output_file = os.path.join(
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app.config["UPLOAD_PATH"], os.path.splitext(filename)[0] + "-cleaned.csv"
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)
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args = ["-i", input_file, "-o", output_file]
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# run subprocess and capture output as UTF-8 so we get a string instead of
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# bytes for ansi2html
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results = subprocess.run(
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["csv-metadata-quality"] + args,
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capture_output=True,
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encoding="UTF-8",
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)
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# convert the output to HTML using ansi2html
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conv = Ansi2HTMLConverter()
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html = conv.convert(results.stdout)
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return render_template(
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"result.html",
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cli_version=cli_version,
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filename=filename,
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stdout=html,
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base64name=base64slug,
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)
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return results_html
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@app.route("/result/<base64slug>/download")
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@ -5,13 +5,21 @@
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{% include 'header.html' %}
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<main class="flex-shrink-0">
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<div class="container py-3">
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<p class="lead">The DSpace CSV Metadata Quality Checker is a pipeline of sanity checks and automated fixes for a number of common issues in metadata files.</p>
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<p class="lead">The DSpace CSV Metadata Quality Checker is a collection of sanity checks and automated fixes for a number of common issues in metadata files.</p>
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<form method="POST" action="" enctype="multipart/form-data">
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<div class="mb-3">
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<label for="formFile" class="form-label">Select a CSV file to process</label>
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<input class="form-control" type="file" id="formFile" name="file" accept=".csv">
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</div>
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<p>Options</p>
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<div class="mb-3 form-check form-switch">
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<input class="form-check-input" type="checkbox" id="unsafeCheckbox" name="unsafe">
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<label class="form-check-label" for="unsafeCheckbox" aria-describedby="unsafeHelp">Enable unsafe fixes</label>
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<div id="unsafeHelp" class="form-text">This will remove newlines and perform <a href="https://withblue.ink/2019/03/11/why-you-need-to-normalize-unicode-strings.html" title='When "Zoë" !== "Zoë". Or why you need to normalize Unicode strings'>normalization of Unicode characters</a>. Read more about these <a href="https://github.com/ilri/csv-metadata-quality#unsafe-fixes">unsafe fixes</a>.</div>
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</div>
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<button type="submit" class="btn btn-primary">Submit</button>
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</form>
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</div>
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@ -4,19 +4,17 @@
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<body class="d-flex flex-column h-100">
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{% include 'header.html' %}
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<main class="flex-shrink-0">
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<div class="container">
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<h1 class="mt-3 fs-2">Results</h1>
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<p>Processing <code>{{ filename }}</code>. Download <a href="/result/{{ base64name }}/download" title="{{ filename | replace('.csv', '-cleaned.csv') }}">cleaned file</a>.</p>
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</div>
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</main>
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<div class="row justify-content-center">
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<div class="col-md-10">
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<div class="container py-3">
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<p class="lead">The DSpace CSV Metadata Quality Checker is a collection of sanity checks and automated fixes for a number of common issues in metadata files.</p>
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<h3>Results</h3>
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<p>Results for <code>{{ filename }}</code>. Download <a href="/result/{{ base64name }}/download" title="{{ filename | replace('.csv', '-cleaned.csv') }}">cleaned file</a>.</p>
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<h3>Log</h3>
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<p>The detailed log of the analysis is below. <span style="color: #00aa00">Green</span> indicates a fix was applied, <span style="color: #aa0000">red</span> indicates an error, and <span style="color: #aa5500">orange</span> indicates a warning.</p>
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<blockquote>
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{{ stdout | safe }}
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{{- stdout | safe -}}
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</blockquote>
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</div>
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</div>
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</main>
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{% include 'footer.html' %}
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</body>
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