mirror of
https://github.com/alanorth/cgspace-notes.git
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123 lines
5.2 KiB
Markdown
123 lines
5.2 KiB
Markdown
+++
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date = "2016-08-01T15:53:00+03:00"
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author = "Alan Orth"
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title = "August, 2016"
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tags = ["notes"]
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image = "../images/bg.jpg"
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+++
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## 2016-08-01
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- Add updated distribution license from Sisay ([#259](https://github.com/ilri/DSpace/issues/259))
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- Play with upgrading Mirage 2 dependencies in `bower.json` because most are several versions of out date
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- Bootstrap is at 3.3.0 but upstream is at 3.3.7, and upgrading to anything beyond 3.3.1 breaks glyphicons and probably more
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- bower stuff is a dead end, waste of time, too many issues
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- Anything after Bootstrap 3.3.1 makes glyphicons disappear (HTTP 404 trying to access from incorrect path of `fonts`)
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- Start working on DSpace 5.1 → 5.5 port:
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```
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$ git checkout -b 55new 5_x-prod
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$ git reset --hard ilri/5_x-prod
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$ git rebase -i dspace-5.5
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```
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- Lots of conflicts that don't make sense (ie, shouldn't conflict!)
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- This file in particular conflicts almost 10 times: `dspace/modules/xmlui-mirage2/src/main/webapp/themes/CGIAR/styles/_style.scss`
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- Checking out a clean branch at 5.5 and cherry-picking our commits works where that file would normally have a conflict
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- Seems to be related to merge commits
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- `git rebase --preserve-merges` doesn't seem to help
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- Eventually I just turned on git rerere and solved the conflicts and completed the 403 commit rebase
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- The 5.5 code now builds but doesn't run (white page in Tomcat)
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## 2016-08-02
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- Ask Atmire for help with DSpace 5.5 issue
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- Vanilla DSpace 5.5 deploys and runs fine
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- Playing with DSpace in Ubuntu 16.04 and Tomcat 7
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- Everything is still fucked up, even vanilla DSpace 5.5
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## 2016-08-04
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- Ask on DSpace mailing list about duplicate authors, Discovery and author text values
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- Atmire responded with some new DSpace 5.5 ready versions to try for their modules
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## 2016-08-05
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- Fix item display incorrectly displaying Species when Breeds were present ([#260](https://github.com/ilri/DSpace/pull/260))
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- Experiment with fixing more authors, like Delia Grace:
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```
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dspacetest=# update metadatavalue set authority='0b4fcbc1-d930-4319-9b4d-ea1553cca70b', confidence=600 where metadata_field_id=3 and text_value='Grace, D.';
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```
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## 2016-08-06
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- Finally figured out how to remove "View/Open" and "Bitstreams" from the item view
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## 2016-08-07
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- Start working on Ubuntu 16.04 Ansible playbook for Tomcat 8, PostgreSQL 9.5, Oracle 8, etc
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## 2016-08-08
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- Still troubleshooting Atmire modules on DSpace 5.5
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- Vanilla DSpace 5.5 works on Tomcat 7...
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- Ooh, and vanilla DSpace 5.5 works on Tomcat 8 with Java 8!
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- Some notes about setting up Tomcat 8, since it's new on this machine...
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- Install latest Oracle Java 8 JDK
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- Create `setenv.sh` in Tomcat 8 `libexec/bin` directory:
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```
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CATALINA_OPTS="-Djava.awt.headless=true -Xms3072m -Xmx3072m -XX:+UseConcMarkSweepGC -XX:+CMSIncrementalMode -Dfile.encoding=UTF-8"
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CATALINA_OPTS="$CATALINA_OPTS -Djava.library.path=/opt/brew/Cellar/tomcat-native/1.2.8/lib"
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JRE_HOME=/Library/Java/JavaVirtualMachines/jdk1.8.0_102.jdk/Contents/Home
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```
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- Edit Tomcat 8 `server.xml` to add regular HTTP listener for solr
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- Symlink webapps:
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```
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$ rm -rf /opt/brew/Cellar/tomcat/8.5.4/libexec/webapps/ROOT
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$ ln -sv ~/dspace/webapps/xmlui /opt/brew/Cellar/tomcat/8.5.4/libexec/webapps/ROOT
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$ ln -sv ~/dspace/webapps/oai /opt/brew/Cellar/tomcat/8.5.4/libexec/webapps/oai
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$ ln -sv ~/dspace/webapps/jspui /opt/brew/Cellar/tomcat/8.5.4/libexec/webapps/jspui
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$ ln -sv ~/dspace/webapps/rest /opt/brew/Cellar/tomcat/8.5.4/libexec/webapps/rest
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$ ln -sv ~/dspace/webapps/solr /opt/brew/Cellar/tomcat/8.5.4/libexec/webapps/solr
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```
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## 2016-08-09
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- More tests of Atmire's 5.5 modules on a clean, working instance of `5_x-prod`
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- Still fails, though perhaps differently than before (Flyway): https://gist.github.com/alanorth/5d49c45a16efd7c6bc1e6642e66118b2
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- More work on Tomcat 8 and Java 8 stuff for Ansible playbooks
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## 2016-08-10
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- Turns out DSpace 5.x isn't ready for Tomcat 8: https://jira.duraspace.org/browse/DS-3092
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- So we'll need to use Tomcat 7 + Java 8 on Ubuntu 16.04
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- More work on the Ansible stuff for this, allowing Tomcat 7 to use Java 8
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- Merge pull request for fixing the type Discovery index to use `dc.type` ([#262](https://github.com/ilri/DSpace/pull/262))
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- Merge pull request for removing "Bitstream" text from item display, as it confuses users and isn't necessary ([#263](https://github.com/ilri/DSpace/pull/263))
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## 2016-08-11
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- Finally got DSpace (5.5) running on Ubuntu 16.04, Tomcat 7, Java 8, PostgreSQL 9.5 via the updated Ansible stuff
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## 2016-08-14
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- Update Mirage 2 build notes for Ubuntu 16.04: https://gist.github.com/alanorth/2cf9c15834dc68a514262fcb04004cb0
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## 2016-08-15
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- Notes on NodeJS + nginx + systemd: https://gist.github.com/alanorth/51acd476891c67dfe27725848cf5ace1
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## 2016-08-16
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- Troubleshoot Paramiko connection issues with Ansible on ILRI servers: [#37](https://github.com/ilri/rmg-ansible-public/issues/37)
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- Turns out we need to add some MACs to our `sshd_config`: hmac-sha2-512,hmac-sha2-256
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- Update DSpace Test's Java to version 8 to start testing this configuration ([seeing as Solr recommends it](https://wiki.apache.org/solr/ShawnHeisey))
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