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92 lines
3.4 KiB
Markdown
92 lines
3.4 KiB
Markdown
---
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title: "January, 2022"
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date: 2022-01-01T15:20:54+02:00
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author: "Alan Orth"
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categories: ["Notes"]
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---
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## 2022-01-01
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- Start a full harvest on AReS
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<!--more-->
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## 2022-01-06
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- Add ORCID identifier for Chris Jones to CGSpace
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- Also tag eighty-eight of his items in CGSpace:
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```console
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$ cat 2022-01-06-add-orcids.csv
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dc.contributor.author,cg.creator.identifier
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"Jones, Chris","Chris Jones: 0000-0001-9096-9728"
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"Jones, Christopher S.","Chris Jones: 0000-0001-9096-9728"
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$ ./ilri/add-orcid-identifiers-csv.py -i 2022-01-06-add-orcids.csv -db dspace63 -u dspacetest -p 'dom@in34sniper'
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```
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## 2022-01-09
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- Validate and register CGSpace on [OpenArchives](https://www.openarchives.org/Register/ValidateSite?log=Z2V7WCT7)
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- Last month IWMI colleagues were asking me to look into this, and after checking the OpenArchives mailing list it seems there was a problem on the server side
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- Now it has worked and the message is "Successfully updated OAI registration database to status COMPLIANT."
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- I received an email (as the Admin contact on our OAI) that says:
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> Your repository has been registered in the OAI database of conforming repositories.
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- Now I'm taking a screenshot of the validation page for posterity, because the logs seem to go away after some time
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- I tried to re-build the Docker image for OpenRXV and got an error in the backend:
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```console
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...
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> openrxv-backend@0.0.1 build
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> nest build
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node_modules/@elastic/elasticsearch/api/types.d.ts:2454:13 - error TS2456: Type alias 'AggregationsAggregate' circularly references itself.
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2454 export type AggregationsAggregate = AggregationsSingleBucketAggregate | AggregationsAutoDateHistogramAggregate | AggregationsFiltersAggregate | AggregationsSignificantTermsAggregate<any> | AggregationsTermsAggregate<any> | AggregationsBucketAggregate | AggregationsCompositeBucketAggregate | AggregationsMultiBucketAggregate<AggregationsBucket> | AggregationsMatrixStatsAggregate | AggregationsKeyedValueAggregate | AggregationsMetricAggregate
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~~~~~~~~~~~~~~~~~~~~~
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node_modules/@elastic/elasticsearch/api/types.d.ts:3209:13 - error TS2456: Type alias 'AggregationsSingleBucketAggregate' circularly references itself.
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3209 export type AggregationsSingleBucketAggregate = AggregationsSingleBucketAggregateKeys
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~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
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Found 2 error(s).
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```
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- Ah, it seems the code on the server was slightly out of date
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- I checked out the latest master branch and it built
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## 2022-01-12
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- Fix some citation formatting issues in Gaia's [eighteen CAS Green Cover publications on DSpace Test](https://dspacetest.cgiar.org/handle/10568/115230)
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## 2022-01-19
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- Francesca was having issues with a submission on CGSpace this week
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- I checked and see a lot of locks in PostgreSQL:
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```console
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$ psql -c "SELECT application_name FROM pg_locks pl LEFT JOIN pg_stat_activity psa ON pl.pid = psa.pid" | sort | uniq -c | sort -n
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1
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1 ------------------
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1 (3506 rows)
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1 application_name
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9 psql
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10
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3487 dspaceWeb
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```
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- As before, I see messages from PostgreSQL about processes waiting for locks since I enabled the `log_lock_waits` setting last month:
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```console
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$ grep -E '^2022-01*' /var/log/postgresql/postgresql-10-main.log | grep -c 'still waiting for'
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12
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```
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- I set a system alert on DSpace and then restarted the server
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<!-- vim: set sw=2 ts=2: -->
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