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348 lines
12 KiB
HTML
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<meta property="og:title" content="September, 2019" />
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<meta property="og:description" content="2019-09-01
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Linode emailed to say that CGSpace (linode18) had a high rate of outbound traffic for several hours this morning
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Here are the top ten IPs in the nginx XMLUI and REST/OAI logs this morning:
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# zcat --force /var/log/nginx/access.log /var/log/nginx/access.log.1 | grep -E "01/Sep/2019:0" | awk '{print $1}' | sort | uniq -c | sort -n | tail -n 10
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440 17.58.101.255
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441 157.55.39.101
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485 207.46.13.43
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728 169.60.128.125
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730 207.46.13.108
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758 157.55.39.9
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808 66.160.140.179
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814 207.46.13.212
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2472 163.172.71.23
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6092 3.94.211.189
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# zcat --force /var/log/nginx/rest.log /var/log/nginx/rest.log.1 /var/log/nginx/oai.log /var/log/nginx/oai.log.1 | grep -E "01/Sep/2019:0" | awk '{print $1}' | sort | uniq -c | sort -n | tail -n 10
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33 2a01:7e00::f03c:91ff:fe16:fcb
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57 3.83.192.124
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57 3.87.77.25
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57 54.82.1.8
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822 2a01:9cc0:47:1:1a:4:0:2
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1223 45.5.184.72
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1633 172.104.229.92
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5112 205.186.128.185
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7249 2a01:7e00::f03c:91ff:fe18:7396
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9124 45.5.186.2
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" />
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<meta property="og:type" content="article" />
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<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/2019-09/" />
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<meta property="article:published_time" content="2019-09-01T10:17:51+03:00" />
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<meta property="article:modified_time" content="2019-09-10T17:20:42+03:00" />
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<meta name="twitter:card" content="summary"/>
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<meta name="twitter:title" content="September, 2019"/>
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<meta name="twitter:description" content="2019-09-01
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Linode emailed to say that CGSpace (linode18) had a high rate of outbound traffic for several hours this morning
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Here are the top ten IPs in the nginx XMLUI and REST/OAI logs this morning:
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# zcat --force /var/log/nginx/access.log /var/log/nginx/access.log.1 | grep -E "01/Sep/2019:0" | awk '{print $1}' | sort | uniq -c | sort -n | tail -n 10
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440 17.58.101.255
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441 157.55.39.101
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485 207.46.13.43
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728 169.60.128.125
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730 207.46.13.108
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758 157.55.39.9
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808 66.160.140.179
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814 207.46.13.212
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2472 163.172.71.23
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6092 3.94.211.189
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# zcat --force /var/log/nginx/rest.log /var/log/nginx/rest.log.1 /var/log/nginx/oai.log /var/log/nginx/oai.log.1 | grep -E "01/Sep/2019:0" | awk '{print $1}' | sort | uniq -c | sort -n | tail -n 10
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33 2a01:7e00::f03c:91ff:fe16:fcb
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57 3.83.192.124
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57 3.87.77.25
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57 54.82.1.8
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822 2a01:9cc0:47:1:1a:4:0:2
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1223 45.5.184.72
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1633 172.104.229.92
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5112 205.186.128.185
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7249 2a01:7e00::f03c:91ff:fe18:7396
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9124 45.5.186.2
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"/>
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<meta name="generator" content="Hugo 0.58.1" />
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<script type="application/ld+json">
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{
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"@context": "http://schema.org",
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"@type": "BlogPosting",
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"headline": "September, 2019",
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"url": "https:\/\/alanorth.github.io\/cgspace-notes\/2019-09\/",
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"datePublished": "2019-09-01T10:17:51\x2b03:00",
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"dateModified": "2019-09-10T17:20:42\x2b03:00",
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"author": {
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"name": "Alan Orth"
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<link rel="canonical" href="https://alanorth.github.io/cgspace-notes/2019-09/">
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<title>September, 2019 | CGSpace Notes</title>
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<header class="blog-header">
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<h1 class="blog-title"><a href="https://alanorth.github.io/cgspace-notes/" rel="home">CGSpace Notes</a></h1>
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<p class="lead blog-description">Documenting day-to-day work on the <a href="https://cgspace.cgiar.org">CGSpace</a> repository.</p>
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<article class="blog-post">
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<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2019-09/">September, 2019</a></h2>
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<p class="blog-post-meta"><time datetime="2019-09-01T10:17:51+03:00">Sun Sep 01, 2019</time> by Alan Orth in
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<i class="fa fa-tag" aria-hidden="true"></i> <a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
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</p>
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</header>
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<h2 id="2019-09-01">2019-09-01</h2>
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<ul>
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<li>Linode emailed to say that CGSpace (linode18) had a high rate of outbound traffic for several hours this morning</li>
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<li><p>Here are the top ten IPs in the nginx XMLUI and REST/OAI logs this morning:</p>
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<pre><code># zcat --force /var/log/nginx/access.log /var/log/nginx/access.log.1 | grep -E "01/Sep/2019:0" | awk '{print $1}' | sort | uniq -c | sort -n | tail -n 10
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440 17.58.101.255
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441 157.55.39.101
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485 207.46.13.43
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728 169.60.128.125
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730 207.46.13.108
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758 157.55.39.9
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808 66.160.140.179
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814 207.46.13.212
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2472 163.172.71.23
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6092 3.94.211.189
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# zcat --force /var/log/nginx/rest.log /var/log/nginx/rest.log.1 /var/log/nginx/oai.log /var/log/nginx/oai.log.1 | grep -E "01/Sep/2019:0" | awk '{print $1}' | sort | uniq -c | sort -n | tail -n 10
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33 2a01:7e00::f03c:91ff:fe16:fcb
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57 3.83.192.124
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57 3.87.77.25
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57 54.82.1.8
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822 2a01:9cc0:47:1:1a:4:0:2
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1223 45.5.184.72
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1633 172.104.229.92
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5112 205.186.128.185
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7249 2a01:7e00::f03c:91ff:fe18:7396
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9124 45.5.186.2
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</code></pre></li>
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</ul>
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<ul>
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<li><code>3.94.211.189</code> is MauiBot, and most of its requests are to Discovery and get rate limited with HTTP 503</li>
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<li><p><code>163.172.71.23</code> is some IP on Online SAS in France and its user agent is:</p>
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<pre><code>Mozilla/5.0 ((Windows; U; Windows NT 6.1; fr; rv:1.9.2) Gecko/20100115 Firefox/3.6)
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</code></pre></li>
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<li><p>It actually got mostly HTTP 200 responses:</p>
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<pre><code># zcat --force /var/log/nginx/access.log /var/log/nginx/access.log.1 | grep -E "01/Sep/2019:0" | grep 163.172.71.23 | awk '{print $9}' | sort | uniq -c
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1775 200
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703 499
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72 503
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</code></pre></li>
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<li><p>And it was mostly requesting Discover pages:</p>
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<pre><code># zcat --force /var/log/nginx/access.log /var/log/nginx/access.log.1 | grep -E "01/Sep/2019:0" | grep 163.172.71.23 | grep -o -E "(bitstream|discover|handle)" | sort | uniq -c
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2350 discover
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71 handle
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</code></pre></li>
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<li><p>I’m not sure why the outbound traffic rate was so high…</p></li>
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</ul>
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<h2 id="2019-09-02">2019-09-02</h2>
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<ul>
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<li>Follow up with Carol and Francesca from Bioversity as they were on holiday during the mid-to-late August
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<ul>
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<li>I told them to check the <a href="https://dspacetest.cgiar.org/handle/10568/103999">temporary collection on DSpace Test</a> where I uploaded the 1,427 items so they can see how it will look</li>
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<li>Also, I told them to advise me about the strange file extensions (.7z, .zip, .lck)</li>
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<li>Also, I reminded Abenet to check the metadata, as the institutional authors at least will need some modification</li>
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</ul></li>
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</ul>
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<h2 id="2019-09-10">2019-09-10</h2>
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<ul>
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<li>Altmetric responded to say that they have fixed an issue with their badge code so now research outputs with multiple handles are showing badges!
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<ul>
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<li>See: <a href="https://hdl.handle.net/handle/10568/97825">https://hdl.handle.net/handle/10568/97825</a></li>
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</ul></li>
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<li>Follow up with Bosede about the mixup with PDFs in the items uploaded in 2018-12 (aka Daniel1807.xsl)
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<ul>
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<li>These are the same ones that Peter noticed last week, that Bosede and I had been discussing earlier this year that we never sorted out</li>
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<li>It looks like these items were uploaded by Sisay on 2018-12-19 so we can use the <a href="https://cgspace.cgiar.org/handle/10568/68616/discover?filtertype_1=dateAccessioned&filter_relational_operator_1=contains&filter_1=2018-12-19&submit_apply_filter=&query=">accession date as a filter</a> to narrow it down to 230 items (of which only 104 have PDFs, according to the Daniel1807.xls input input file)</li>
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<li>Now I just checked a few manually and they are correct in the original input file, so something must have happened when Sisay was processing them for upload</li>
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<li>I have asked Sisay to fix them…</li>
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</ul></li>
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<li>Continue working on CG Core v2 migration, focusing on the crosswalk mappings
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<ul>
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<li>I think we can skip the MODS crosswalk for now because it is only used in <a href="https://wiki.duraspace.org/display/DSDOC5x/DSpace+AIP+Format#DSpaceAIPFormat-MODSSchema">AIP exports that are meant for non-DSpace systems</a></li>
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<li>We should probably do the QDC crosswalk as well as those in <code>xhtml-head-item.properties</code>…</li>
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<li>Ouch, there is potentially a lot of work in the OAI metadata formats like DIM, METS, and QDC (see <code>dspace/config/crosswalks/oai/*.xsl</code>)</li>
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<li>In general I think I should only modify the left side of the crosswalk mappings (ie, where metadata is coming from) so we maintain the same exact output for search engines, etc</li>
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</ul></li>
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</ul>
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<h2 id="2019-09-11">2019-09-11</h2>
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<ul>
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<li>Maria Garruccio asked me to add two new Bioversity ORCID identifiers to CGSpace so I created a <a href="https://github.com/ilri/DSpace/pull/431">pull request</a></li>
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<li>Marissa Van Epp asked me to add new CCAFS Phase II project tags to CGSpace so I created a <a href="https://github.com/ilri/DSpace/pull/432">pull request</a>
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<ul>
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<li>I will wait until I hear from her to merge it because there is one tag that seems to be a duplicate because its name (PII-WA_agrosylvopast) is similar to one that already exists (PII-WA_AgroSylvopastoralSystems)</li>
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</ul></li>
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<li>More work on the CG Core v2 migrations
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<ul>
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<li>I have updated my <a href="https://gist.github.com/alanorth/2db39e91f48d116e00a4edffd6ba6409">notes on the possible changes</a> and done more work on the XMLUI replacements</li>
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</ul></li>
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</ul>
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<h2 id="2019-09-12">2019-09-12</h2>
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<ul>
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<li>Deploy <a href="https://jdbc.postgresql.org/">PostgreSQL JDBC driver</a> version 42.2.7 on DSpace Test and update the <a href="https://github.com/ilri/rmg-ansible-public">Ansible infrastructure scripts</a></li>
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</ul>
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<!-- vim: set sw=2 ts=2: -->
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</article>
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</div> <!-- /.blog-main -->
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<aside class="col-sm-3 ml-auto blog-sidebar">
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<section class="sidebar-module">
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<h4>Recent Posts</h4>
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<ol class="list-unstyled">
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<li><a href="/cgspace-notes/posts/">Posts</a></li>
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<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
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<li><a href="/cgspace-notes/2019-08/">August, 2019</a></li>
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<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
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<li><a href="/cgspace-notes/2019-06/">June, 2019</a></li>
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</ol>
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</section>
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<section class="sidebar-module">
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<h4>Links</h4>
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<ol class="list-unstyled">
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<li><a href="https://cgspace.cgiar.org">CGSpace</a></li>
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<li><a href="https://dspacetest.cgiar.org">DSpace Test</a></li>
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<li><a href="https://github.com/ilri/DSpace">CGSpace @ GitHub</a></li>
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</ol>
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</section>
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