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2019-09-01 09:41:30 +02:00
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<meta property="og:title" content="September, 2019" />
<meta property="og:description" content="2019-09-01
Linode emailed to say that CGSpace (linode18) had a high rate of outbound traffic for several hours this morning
Here are the top ten IPs in the nginx XMLUI and REST/OAI logs this morning:
# zcat --force /var/log/nginx/access.log /var/log/nginx/access.log.1 | grep -E &quot;01/Sep/2019:0&quot; | awk &#39;{print $1}&#39; | sort | uniq -c | sort -n | tail -n 10
440 17.58.101.255
441 157.55.39.101
485 207.46.13.43
728 169.60.128.125
730 207.46.13.108
758 157.55.39.9
808 66.160.140.179
814 207.46.13.212
2472 163.172.71.23
6092 3.94.211.189
# zcat --force /var/log/nginx/rest.log /var/log/nginx/rest.log.1 /var/log/nginx/oai.log /var/log/nginx/oai.log.1 | grep -E &quot;01/Sep/2019:0&quot; | awk &#39;{print $1}&#39; | sort | uniq -c | sort -n | tail -n 10
33 2a01:7e00::f03c:91ff:fe16:fcb
57 3.83.192.124
57 3.87.77.25
57 54.82.1.8
822 2a01:9cc0:47:1:1a:4:0:2
1223 45.5.184.72
1633 172.104.229.92
5112 205.186.128.185
7249 2a01:7e00::f03c:91ff:fe18:7396
9124 45.5.186.2
" />
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2019-09-12 17:21:43 +02:00
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<meta name="twitter:description" content="2019-09-01
Linode emailed to say that CGSpace (linode18) had a high rate of outbound traffic for several hours this morning
Here are the top ten IPs in the nginx XMLUI and REST/OAI logs this morning:
# zcat --force /var/log/nginx/access.log /var/log/nginx/access.log.1 | grep -E &quot;01/Sep/2019:0&quot; | awk &#39;{print $1}&#39; | sort | uniq -c | sort -n | tail -n 10
440 17.58.101.255
441 157.55.39.101
485 207.46.13.43
728 169.60.128.125
730 207.46.13.108
758 157.55.39.9
808 66.160.140.179
814 207.46.13.212
2472 163.172.71.23
6092 3.94.211.189
# zcat --force /var/log/nginx/rest.log /var/log/nginx/rest.log.1 /var/log/nginx/oai.log /var/log/nginx/oai.log.1 | grep -E &quot;01/Sep/2019:0&quot; | awk &#39;{print $1}&#39; | sort | uniq -c | sort -n | tail -n 10
33 2a01:7e00::f03c:91ff:fe16:fcb
57 3.83.192.124
57 3.87.77.25
57 54.82.1.8
822 2a01:9cc0:47:1:1a:4:0:2
1223 45.5.184.72
1633 172.104.229.92
5112 205.186.128.185
7249 2a01:7e00::f03c:91ff:fe18:7396
9124 45.5.186.2
"/>
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2019-09-10 15:59:18 +02:00
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<h1 class="blog-title"><a href="https://alanorth.github.io/cgspace-notes/" rel="home">CGSpace Notes</a></h1>
<p class="lead blog-description">Documenting day-to-day work on the <a href="https://cgspace.cgiar.org">CGSpace</a> repository.</p>
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<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2019-09/">September, 2019</a></h2>
<p class="blog-post-meta"><time datetime="2019-09-01T10:17:51&#43;03:00">Sun Sep 01, 2019</time> by Alan Orth in
<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
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<h2 id="2019-09-01">2019-09-01</h2>
<ul>
<li>Linode emailed to say that CGSpace (linode18) had a high rate of outbound traffic for several hours this morning</li>
<li><p>Here are the top ten IPs in the nginx XMLUI and REST/OAI logs this morning:</p>
<pre><code># zcat --force /var/log/nginx/access.log /var/log/nginx/access.log.1 | grep -E &quot;01/Sep/2019:0&quot; | awk '{print $1}' | sort | uniq -c | sort -n | tail -n 10
440 17.58.101.255
441 157.55.39.101
485 207.46.13.43
728 169.60.128.125
730 207.46.13.108
758 157.55.39.9
808 66.160.140.179
814 207.46.13.212
2472 163.172.71.23
6092 3.94.211.189
# zcat --force /var/log/nginx/rest.log /var/log/nginx/rest.log.1 /var/log/nginx/oai.log /var/log/nginx/oai.log.1 | grep -E &quot;01/Sep/2019:0&quot; | awk '{print $1}' | sort | uniq -c | sort -n | tail -n 10
33 2a01:7e00::f03c:91ff:fe16:fcb
57 3.83.192.124
57 3.87.77.25
57 54.82.1.8
822 2a01:9cc0:47:1:1a:4:0:2
1223 45.5.184.72
1633 172.104.229.92
5112 205.186.128.185
7249 2a01:7e00::f03c:91ff:fe18:7396
9124 45.5.186.2
</code></pre></li>
</ul>
<ul>
<li><code>3.94.211.189</code> is MauiBot, and most of its requests are to Discovery and get rate limited with HTTP 503</li>
<li><p><code>163.172.71.23</code> is some IP on Online SAS in France and its user agent is:</p>
<pre><code>Mozilla/5.0 ((Windows; U; Windows NT 6.1; fr; rv:1.9.2) Gecko/20100115 Firefox/3.6)
</code></pre></li>
<li><p>It actually got mostly HTTP 200 responses:</p>
<pre><code># zcat --force /var/log/nginx/access.log /var/log/nginx/access.log.1 | grep -E &quot;01/Sep/2019:0&quot; | grep 163.172.71.23 | awk '{print $9}' | sort | uniq -c
1775 200
703 499
72 503
</code></pre></li>
<li><p>And it was mostly requesting Discover pages:</p>
<pre><code># zcat --force /var/log/nginx/access.log /var/log/nginx/access.log.1 | grep -E &quot;01/Sep/2019:0&quot; | grep 163.172.71.23 | grep -o -E &quot;(bitstream|discover|handle)&quot; | sort | uniq -c
2350 discover
71 handle
</code></pre></li>
<li><p>I&rsquo;m not sure why the outbound traffic rate was so high&hellip;</p></li>
</ul>
Add notes for 2019-09-02
2019-09-03 00:03:06 +02:00
<h2 id="2019-09-02">2019-09-02</h2>
<ul>
<li>Follow up with Carol and Francesca from Bioversity as they were on holiday during the mid-to-late August
<ul>
<li>I told them to check the <a href="https://dspacetest.cgiar.org/handle/10568/103999">temporary collection on DSpace Test</a> where I uploaded the 1,427 items so they can see how it will look</li>
<li>Also, I told them to advise me about the strange file extensions (.7z, .zip, .lck)</li>
<li>Also, I reminded Abenet to check the metadata, as the institutional authors at least will need some modification</li>
</ul></li>
</ul>
Add notes for 2019-09-10
2019-09-10 15:59:18 +02:00
<h2 id="2019-09-10">2019-09-10</h2>
<ul>
<li>Altmetric responded to say that they have fixed an issue with their badge code so now research outputs with multiple handles are showing badges!
<ul>
<li>See: <a href="https://hdl.handle.net/handle/10568/97825">https://hdl.handle.net/handle/10568/97825</a></li>
</ul></li>
Add notes for 2019-09-12
2019-09-12 17:21:43 +02:00
<li>Follow up with Bosede about the mixup with PDFs in the items uploaded in 2018-12 (aka Daniel1807.xsl)
Add notes for 2019-09-10
2019-09-10 15:59:18 +02:00
<ul>
<li>These are the same ones that Peter noticed last week, that Bosede and I had been discussing earlier this year that we never sorted out</li>
Update notes for 2019-09-10
2019-09-10 16:20:42 +02:00
<li>It looks like these items were uploaded by Sisay on 2018-12-19 so we can use the <a href="https://cgspace.cgiar.org/handle/10568/68616/discover?filtertype_1=dateAccessioned&amp;filter_relational_operator_1=contains&amp;filter_1=2018-12-19&amp;submit_apply_filter=&amp;query=">accession date as a filter</a> to narrow it down to 230 items (of which only 104 have PDFs, according to the Daniel1807.xls input input file)</li>
Add notes for 2019-09-12
2019-09-12 17:21:43 +02:00
<li>Now I just checked a few manually and they are correct in the original input file, so something must have happened when Sisay was processing them for upload</li>
<li>I have asked Sisay to fix them&hellip;</li>
Add notes for 2019-09-10
2019-09-10 15:59:18 +02:00
</ul></li>
<li>Continue working on CG Core v2 migration, focusing on the crosswalk mappings
<ul>
<li>I think we can skip the MODS crosswalk for now because it is only used in <a href="https://wiki.duraspace.org/display/DSDOC5x/DSpace+AIP+Format#DSpaceAIPFormat-MODSSchema">AIP exports that are meant for non-DSpace systems</a></li>
<li>We should probably do the QDC crosswalk as well as those in <code>xhtml-head-item.properties</code>&hellip;</li>
<li>Ouch, there is potentially a lot of work in the OAI metadata formats like DIM, METS, and QDC (see <code>dspace/config/crosswalks/oai/*.xsl</code>)</li>
<li>In general I think I should only modify the left side of the crosswalk mappings (ie, where metadata is coming from) so we maintain the same exact output for search engines, etc</li>
</ul></li>
</ul>
Add notes for 2019-09-12
2019-09-12 17:21:43 +02:00
<h2 id="2019-09-11">2019-09-11</h2>
<ul>
<li>Maria Garruccio asked me to add two new Bioversity ORCID identifiers to CGSpace so I created a <a href="https://github.com/ilri/DSpace/pull/431">pull request</a></li>
<li>Marissa Van Epp asked me to add new CCAFS Phase II project tags to CGSpace so I created a <a href="https://github.com/ilri/DSpace/pull/432">pull request</a>
<ul>
<li>I will wait until I hear from her to merge it because there is one tag that seems to be a duplicate because its name (PII-WA_agrosylvopast) is similar to one that already exists (PII-WA_AgroSylvopastoralSystems)</li>
</ul></li>
<li>More work on the CG Core v2 migrations
<ul>
<li>I have updated my <a href="https://gist.github.com/alanorth/2db39e91f48d116e00a4edffd6ba6409">notes on the possible changes</a> and done more work on the XMLUI replacements</li>
</ul></li>
</ul>
<h2 id="2019-09-12">2019-09-12</h2>
<ul>
<li>Deploy <a href="https://jdbc.postgresql.org/">PostgreSQL JDBC driver</a> version 42.2.7 on DSpace Test and update the <a href="https://github.com/ilri/rmg-ansible-public">Ansible infrastructure scripts</a></li>
</ul>
Add notes for 2019-09-01
2019-09-01 09:41:30 +02:00
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<li><a href="/cgspace-notes/2019-09/">September, 2019</a></li>
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