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91 lines
4.7 KiB
Markdown
91 lines
4.7 KiB
Markdown
+++
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date = "2016-10-03T15:53:00+03:00"
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author = "Alan Orth"
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title = "October, 2016"
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tags = ["Notes"]
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+++
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## 2016-10-03
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- Testing adding [ORCIDs to a CSV](https://wiki.duraspace.org/display/DSDOC5x/ORCID+Integration#ORCIDIntegration-EditingexistingitemsusingBatchCSVEditing) file for a single item to see if the author orders get messed up
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- Need to test the following scenarios to see how author order is affected:
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- ORCIDs only
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- ORCIDs plus normal authors
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- I exported a random item's metadata as CSV, deleted *all columns* except id and collection, and made a new coloum called `ORCID:dc.contributor.author` with the following random ORCIDs from the ORCID registry:
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```
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0000-0002-6115-0956||0000-0002-3812-8793||0000-0001-7462-405X
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```
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- Hmm, with the `dc.contributor.author` column removed, DSpace doesn't detect any changes
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- With a blank `dc.contributor.author` column, DSpace wants to remove all non-ORCID authors and add the new ORCID authors
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- I added the [disclaimer text](https://github.com/ilri/DSpace/issues/234) to the About page, then added a footer link to the disclaimer's ID, but there is a Bootstrap issue that causes the page content to disappear when using in-page anchors: https://github.com/twbs/bootstrap/issues/1768
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- Looks like we'll just have to add the text to the About page (without a link) or add a separate page
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## 2016-10-04
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- Start testing cleanups of authors that Peter sent last week
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- Out of 40,000+ rows, Peter had indicated corrections for ~3,200 of them—too many to look through carefully, so I did some basic quality checking:
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- Trim leading/trailing whitespace
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- Find invalid characters
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- Cluster values to merge obvious authors
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- That left us with 3,180 valid corrections and 3 deletions:
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```
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$ ./fix-metadata-values.py -i authors-fix-3180.csv -f dc.contributor.author -t correct -m 3 -d dspacetest -u dspacetest -p fuuu
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$ ./delete-metadata-values.py -i authors-delete-3.csv -f dc.contributor.author -m 3 -d dspacetest -u dspacetest -p fuuu
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```
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- Remove old about page ([#284](https://github.com/ilri/DSpace/pull/284))
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- CGSpace crashed a few times today
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- Generate list of unique authors in CCAFS collections:
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```
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dspacetest=# \copy (select distinct text_value, count(*) as count from metadatavalue where metadata_field_id = (select metadata_field_id from metadatafieldregistry where element = 'contributor' and qualifier = 'author') AND resource_type_id = 2 AND resource_id IN (select item_id from collection2item where collection_id IN (select resource_id from handle where handle in ('10568/32729', '10568/5472', '10568/5473', '10568/10288', '10568/70974', '10568/3547', '10568/3549', '10568/3531','10568/16890','10568/5470','10568/3546', '10568/36024', '10568/66581', '10568/21789', '10568/5469', '10568/5468', '10568/3548', '10568/71053', '10568/25167'))) group by text_value order by count desc) to /tmp/ccafs-authors.csv with csv;
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```
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## 2016-10-05
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- Work on more infrastructure cleanups for Ansible DSpace role
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- Clean up Let's Encrypt plumbing and submit pull request for rmg-ansible-public ([#60](https://github.com/ilri/rmg-ansible-public/pull/60))
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## 2016-10-06
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- Nice! DSpace Test (linode02) is now having `java.lang.OutOfMemoryError: Java heap space` errors...
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- Heap space is 2048m, and we have 5GB of RAM being used for OS cache (Solr!) so let's just bump the memory to 3072m
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- Magdalena from CCAFS asked why the colors in the thumbnails for these [two](https://cgspace.cgiar.org/handle/10568/71249) [items](https://cgspace.cgiar.org/handle/10568/71259) look different, even though they are the same in the PDF itself
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- Turns out the first PDF was exported from InDesign using CMYK and the second one was using sRGB
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- Run all system updates on DSpace Test and reboot it
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## 2016-10-08
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- Re-deploy CGSpace with latest changes from late September and early October
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- Run fixes for ILRI subjects and delete blank metadata values:
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```
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dspace=# delete from metadatavalue where resource_type_id=2 and text_value='';
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DELETE 11
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```
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- Run all system updates and reboot CGSpace
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- Delete ten gigs of old 2015 Tomcat logs that never got rotated (WTF?):
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```
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root@linode01:~# ls -lh /var/log/tomcat7/localhost_access_log.2015* | wc -l
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47
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```
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- Delete 2GB `cron-filter-media.log` file, as it is just a log from a cron job and it doesn't get rotated like normal log files (almost a year now maybe)
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## 2016-10-14
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- Run all system updates on DSpace Test and reboot server
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- Looking into some issues with Discovery filters in Atmire's content and usage analysis module after adjusting the filter class
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- Looks like changing the filters from `configuration.DiscoverySearchFilterFacet` to `configuration.DiscoverySearchFilter` breaks them in Atmire CUA module
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