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69f733f2be
...
6770385f36
@ -221,7 +221,7 @@ Found 2 error(s).
|
|||||||
- For now I just ran all the system updates and rebooted the machine (linode20)
|
- For now I just ran all the system updates and rebooted the machine (linode20)
|
||||||
- Then I started a fresh harvest
|
- Then I started a fresh harvest
|
||||||
- Now I cleared all images on my local machine and I get the same error when building the backend
|
- Now I cleared all images on my local machine and I get the same error when building the backend
|
||||||
- It seems to be related to `@elastic/elasticsearch-js`](https://github.com/elastic/elasticsearch-js), which our `package.json` pins with version `^7.13.0`
|
- It seems to be related to `@elastic/elasticsearch-js`](https://github.com/elastic/elasticsearch-js), which our `package.json` pins with version `^7.13.0"
|
||||||
- I see that AReS is currently using 7.15.0 in its `package-lock.json`, and 7.16.0 was released four days ago so perhaps it's that...
|
- I see that AReS is currently using 7.15.0 in its `package-lock.json`, and 7.16.0 was released four days ago so perhaps it's that...
|
||||||
- Pinning `~7.15.0` allows nest to build fine...
|
- Pinning `~7.15.0` allows nest to build fine...
|
||||||
- I made a pull request
|
- I made a pull request
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|
@ -24,43 +24,4 @@ dc.contributor.author,cg.creator.identifier
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|||||||
$ ./ilri/add-orcid-identifiers-csv.py -i 2022-01-06-add-orcids.csv -db dspace63 -u dspacetest -p 'dom@in34sniper'
|
$ ./ilri/add-orcid-identifiers-csv.py -i 2022-01-06-add-orcids.csv -db dspace63 -u dspacetest -p 'dom@in34sniper'
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```
|
```
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||||||
|
|
||||||
## 2022-01-09
|
|
||||||
|
|
||||||
- Validate and register CGSpace on [OpenArchives](https://www.openarchives.org/Register/ValidateSite?log=Z2V7WCT7)
|
|
||||||
- Last month IWMI colleagues were asking me to look into this, and after checking the OpenArchives mailing list it seems there was a problem on the server side
|
|
||||||
- Now it has worked and the message is "Successfully updated OAI registration database to status COMPLIANT."
|
|
||||||
- I received an email (as the Admin contact on our OAI) that says:
|
|
||||||
|
|
||||||
> Your repository has been registered in the OAI database of conforming repositories.
|
|
||||||
|
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||||||
- Now I'm taking a screenshot of the validation page for posterity, because the logs seem to go away after some time
|
|
||||||
|
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||||||
![OpenArchives.org registration](/cgspace-notes/2022/01/openarchives-registration.png)
|
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||||||
|
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||||||
- I tried to re-build the Docker image for OpenRXV and got an error in the backend:
|
|
||||||
|
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||||||
```console
|
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||||||
...
|
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||||||
> openrxv-backend@0.0.1 build
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> nest build
|
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|
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||||||
node_modules/@elastic/elasticsearch/api/types.d.ts:2454:13 - error TS2456: Type alias 'AggregationsAggregate' circularly references itself.
|
|
||||||
|
|
||||||
2454 export type AggregationsAggregate = AggregationsSingleBucketAggregate | AggregationsAutoDateHistogramAggregate | AggregationsFiltersAggregate | AggregationsSignificantTermsAggregate<any> | AggregationsTermsAggregate<any> | AggregationsBucketAggregate | AggregationsCompositeBucketAggregate | AggregationsMultiBucketAggregate<AggregationsBucket> | AggregationsMatrixStatsAggregate | AggregationsKeyedValueAggregate | AggregationsMetricAggregate
|
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||||||
~~~~~~~~~~~~~~~~~~~~~
|
|
||||||
node_modules/@elastic/elasticsearch/api/types.d.ts:3209:13 - error TS2456: Type alias 'AggregationsSingleBucketAggregate' circularly references itself.
|
|
||||||
|
|
||||||
3209 export type AggregationsSingleBucketAggregate = AggregationsSingleBucketAggregateKeys
|
|
||||||
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
|
|
||||||
|
|
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Found 2 error(s).
|
|
||||||
```
|
|
||||||
|
|
||||||
- Ah, it seems the code on the server was slightly out of date
|
|
||||||
- I checked out the latest master branch and it built
|
|
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|
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||||||
## 2022-01-12
|
|
||||||
|
|
||||||
- Fix some citation formatting issues in Gaia's [eighteen CAS Green Cover publications on DSpace Test](https://dspacetest.cgiar.org/handle/10568/115230)
|
|
||||||
|
|
||||||
<!-- vim: set sw=2 ts=2: -->
|
<!-- vim: set sw=2 ts=2: -->
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|
@ -22,7 +22,7 @@ Total number of bot hits purged: 3679
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<meta property="og:type" content="article" />
|
<meta property="og:type" content="article" />
|
||||||
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/2021-12/" />
|
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/2021-12/" />
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||||||
<meta property="article:published_time" content="2021-12-01T16:07:07+02:00" />
|
<meta property="article:published_time" content="2021-12-01T16:07:07+02:00" />
|
||||||
<meta property="article:modified_time" content="2022-01-09T10:39:51+02:00" />
|
<meta property="article:modified_time" content="2021-12-29T16:29:37+02:00" />
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
@ -52,7 +52,7 @@ Total number of bot hits purged: 3679
|
|||||||
"url": "https://alanorth.github.io/cgspace-notes/2021-12/",
|
"url": "https://alanorth.github.io/cgspace-notes/2021-12/",
|
||||||
"wordCount": "2686",
|
"wordCount": "2686",
|
||||||
"datePublished": "2021-12-01T16:07:07+02:00",
|
"datePublished": "2021-12-01T16:07:07+02:00",
|
||||||
"dateModified": "2022-01-09T10:39:51+02:00",
|
"dateModified": "2021-12-29T16:29:37+02:00",
|
||||||
"author": {
|
"author": {
|
||||||
"@type": "Person",
|
"@type": "Person",
|
||||||
"name": "Alan Orth"
|
"name": "Alan Orth"
|
||||||
@ -381,7 +381,7 @@ node_modules/@elastic/elasticsearch/api/types.d.ts:3209:13 - error TS2456: Type
|
|||||||
</li>
|
</li>
|
||||||
<li>Now I cleared all images on my local machine and I get the same error when building the backend
|
<li>Now I cleared all images on my local machine and I get the same error when building the backend
|
||||||
<ul>
|
<ul>
|
||||||
<li>It seems to be related to <code>@elastic/elasticsearch-js</code>](<a href="https://github.com/elastic/elasticsearch-js)">https://github.com/elastic/elasticsearch-js)</a>, which our <code>package.json</code> pins with version <code>^7.13.0</code></li>
|
<li>It seems to be related to <code>@elastic/elasticsearch-js</code>](<a href="https://github.com/elastic/elasticsearch-js)">https://github.com/elastic/elasticsearch-js)</a>, which our <code>package.json</code> pins with version `^7.13.0"</li>
|
||||||
<li>I see that AReS is currently using 7.15.0 in its <code>package-lock.json</code>, and 7.16.0 was released four days ago so perhaps it’s that…</li>
|
<li>I see that AReS is currently using 7.15.0 in its <code>package-lock.json</code>, and 7.16.0 was released four days ago so perhaps it’s that…</li>
|
||||||
<li>Pinning <code>~7.15.0</code> allows nest to build fine…</li>
|
<li>Pinning <code>~7.15.0</code> allows nest to build fine…</li>
|
||||||
<li>I made a pull request</li>
|
<li>I made a pull request</li>
|
||||||
|
@ -14,7 +14,7 @@ Start a full harvest on AReS
|
|||||||
<meta property="og:type" content="article" />
|
<meta property="og:type" content="article" />
|
||||||
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/2022-01/" />
|
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/2022-01/" />
|
||||||
<meta property="article:published_time" content="2022-01-01T15:20:54+02:00" />
|
<meta property="article:published_time" content="2022-01-01T15:20:54+02:00" />
|
||||||
<meta property="article:modified_time" content="2022-01-06T15:48:27+02:00" />
|
<meta property="article:modified_time" content="2022-01-01T15:21:32+02:00" />
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
@ -34,9 +34,9 @@ Start a full harvest on AReS
|
|||||||
"@type": "BlogPosting",
|
"@type": "BlogPosting",
|
||||||
"headline": "January, 2022",
|
"headline": "January, 2022",
|
||||||
"url": "https://alanorth.github.io/cgspace-notes/2022-01/",
|
"url": "https://alanorth.github.io/cgspace-notes/2022-01/",
|
||||||
"wordCount": "263",
|
"wordCount": "47",
|
||||||
"datePublished": "2022-01-01T15:20:54+02:00",
|
"datePublished": "2022-01-01T15:20:54+02:00",
|
||||||
"dateModified": "2022-01-06T15:48:27+02:00",
|
"dateModified": "2022-01-01T15:21:32+02:00",
|
||||||
"author": {
|
"author": {
|
||||||
"@type": "Person",
|
"@type": "Person",
|
||||||
"name": "Alan Orth"
|
"name": "Alan Orth"
|
||||||
@ -127,52 +127,7 @@ dc.contributor.author,cg.creator.identifier
|
|||||||
"Jones, Chris","Chris Jones: 0000-0001-9096-9728"
|
"Jones, Chris","Chris Jones: 0000-0001-9096-9728"
|
||||||
"Jones, Christopher S.","Chris Jones: 0000-0001-9096-9728"
|
"Jones, Christopher S.","Chris Jones: 0000-0001-9096-9728"
|
||||||
$ ./ilri/add-orcid-identifiers-csv.py -i 2022-01-06-add-orcids.csv -db dspace63 -u dspacetest -p <span style="color:#e6db74">'dom@in34sniper'</span>
|
$ ./ilri/add-orcid-identifiers-csv.py -i 2022-01-06-add-orcids.csv -db dspace63 -u dspacetest -p <span style="color:#e6db74">'dom@in34sniper'</span>
|
||||||
</code></pre></div><h2 id="2022-01-09">2022-01-09</h2>
|
</code></pre></div><!-- raw HTML omitted -->
|
||||||
<ul>
|
|
||||||
<li>Validate and register CGSpace on <a href="https://www.openarchives.org/Register/ValidateSite?log=Z2V7WCT7">OpenArchives</a>
|
|
||||||
<ul>
|
|
||||||
<li>Last month IWMI colleagues were asking me to look into this, and after checking the OpenArchives mailing list it seems there was a problem on the server side</li>
|
|
||||||
<li>Now it has worked and the message is “Successfully updated OAI registration database to status COMPLIANT.”</li>
|
|
||||||
<li>I received an email (as the Admin contact on our OAI) that says:</li>
|
|
||||||
</ul>
|
|
||||||
</li>
|
|
||||||
</ul>
|
|
||||||
<blockquote>
|
|
||||||
<p>Your repository has been registered in the OAI database of conforming repositories.</p>
|
|
||||||
</blockquote>
|
|
||||||
<ul>
|
|
||||||
<li>Now I’m taking a screenshot of the validation page for posterity, because the logs seem to go away after some time</li>
|
|
||||||
</ul>
|
|
||||||
<p><img src="/cgspace-notes/2022/01/openarchives-registration.png" alt="OpenArchives.org registration"></p>
|
|
||||||
<ul>
|
|
||||||
<li>I tried to re-build the Docker image for OpenRXV and got an error in the backend:</li>
|
|
||||||
</ul>
|
|
||||||
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4"><code class="language-console" data-lang="console">...
|
|
||||||
> openrxv-backend@0.0.1 build
|
|
||||||
> nest build
|
|
||||||
<span style="color:#960050;background-color:#1e0010">
|
|
||||||
</span><span style="color:#960050;background-color:#1e0010"></span>node_modules/@elastic/elasticsearch/api/types.d.ts:2454:13 - error TS2456: Type alias 'AggregationsAggregate' circularly references itself.
|
|
||||||
<span style="color:#960050;background-color:#1e0010">
|
|
||||||
</span><span style="color:#960050;background-color:#1e0010"></span>2454 export type AggregationsAggregate = AggregationsSingleBucketAggregate | AggregationsAutoDateHistogramAggregate | AggregationsFiltersAggregate | AggregationsSignificantTermsAggregate<any> | AggregationsTermsAggregate<any> | AggregationsBucketAggregate | AggregationsCompositeBucketAggregate | AggregationsMultiBucketAggregate<AggregationsBucket> | AggregationsMatrixStatsAggregate | AggregationsKeyedValueAggregate | AggregationsMetricAggregate
|
|
||||||
~~~~~~~~~~~~~~~~~~~~~
|
|
||||||
node_modules/@elastic/elasticsearch/api/types.d.ts:3209:13 - error TS2456: Type alias 'AggregationsSingleBucketAggregate' circularly references itself.
|
|
||||||
<span style="color:#960050;background-color:#1e0010">
|
|
||||||
</span><span style="color:#960050;background-color:#1e0010"></span>3209 export type AggregationsSingleBucketAggregate = AggregationsSingleBucketAggregateKeys
|
|
||||||
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
|
|
||||||
<span style="color:#960050;background-color:#1e0010">
|
|
||||||
</span><span style="color:#960050;background-color:#1e0010"></span>Found 2 error(s).
|
|
||||||
</code></pre></div><ul>
|
|
||||||
<li>Ah, it seems the code on the server was slightly out of date
|
|
||||||
<ul>
|
|
||||||
<li>I checked out the latest master branch and it built</li>
|
|
||||||
</ul>
|
|
||||||
</li>
|
|
||||||
</ul>
|
|
||||||
<h2 id="2022-01-12">2022-01-12</h2>
|
|
||||||
<ul>
|
|
||||||
<li>Fix some citation formatting issues in Gaia’s <a href="https://dspacetest.cgiar.org/handle/10568/115230">eighteen CAS Green Cover publications on DSpace Test</a></li>
|
|
||||||
</ul>
|
|
||||||
<!-- raw HTML omitted -->
|
|
||||||
|
|
||||||
|
|
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|
|
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|
Binary file not shown.
Before Width: | Height: | Size: 249 KiB |
@ -10,7 +10,7 @@
|
|||||||
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
|
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
|
||||||
<meta property="og:type" content="website" />
|
<meta property="og:type" content="website" />
|
||||||
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/" />
|
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/" />
|
||||||
<meta property="og:updated_time" content="2022-01-09T10:39:51+02:00" />
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<meta property="og:updated_time" content="2022-01-01T15:21:32+02:00" />
|
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||||||
|
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|
|
||||||
|
@ -10,7 +10,7 @@
|
|||||||
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
|
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
|
||||||
<meta property="og:type" content="website" />
|
<meta property="og:type" content="website" />
|
||||||
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/notes/" />
|
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/notes/" />
|
||||||
<meta property="og:updated_time" content="2022-01-09T10:39:51+02:00" />
|
<meta property="og:updated_time" content="2022-01-01T15:21:32+02:00" />
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
@ -10,7 +10,7 @@
|
|||||||
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
|
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
|
||||||
<meta property="og:type" content="website" />
|
<meta property="og:type" content="website" />
|
||||||
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/notes/" />
|
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/notes/" />
|
||||||
<meta property="og:updated_time" content="2022-01-09T10:39:51+02:00" />
|
<meta property="og:updated_time" content="2022-01-01T15:21:32+02:00" />
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
@ -10,7 +10,7 @@
|
|||||||
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
|
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
|
||||||
<meta property="og:type" content="website" />
|
<meta property="og:type" content="website" />
|
||||||
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/notes/" />
|
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/notes/" />
|
||||||
<meta property="og:updated_time" content="2022-01-09T10:39:51+02:00" />
|
<meta property="og:updated_time" content="2022-01-01T15:21:32+02:00" />
|
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|
|
||||||
|
|
||||||
|
|
||||||
|
@ -10,7 +10,7 @@
|
|||||||
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
|
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
|
||||||
<meta property="og:type" content="website" />
|
<meta property="og:type" content="website" />
|
||||||
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/notes/" />
|
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/notes/" />
|
||||||
<meta property="og:updated_time" content="2022-01-09T10:39:51+02:00" />
|
<meta property="og:updated_time" content="2022-01-01T15:21:32+02:00" />
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
@ -10,7 +10,7 @@
|
|||||||
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
|
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
|
||||||
<meta property="og:type" content="website" />
|
<meta property="og:type" content="website" />
|
||||||
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/notes/" />
|
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/notes/" />
|
||||||
<meta property="og:updated_time" content="2022-01-09T10:39:51+02:00" />
|
<meta property="og:updated_time" content="2022-01-01T15:21:32+02:00" />
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
@ -10,7 +10,7 @@
|
|||||||
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
|
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
|
||||||
<meta property="og:type" content="website" />
|
<meta property="og:type" content="website" />
|
||||||
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/notes/" />
|
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/notes/" />
|
||||||
<meta property="og:updated_time" content="2022-01-09T10:39:51+02:00" />
|
<meta property="og:updated_time" content="2022-01-01T15:21:32+02:00" />
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
@ -10,7 +10,7 @@
|
|||||||
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
|
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
|
||||||
<meta property="og:type" content="website" />
|
<meta property="og:type" content="website" />
|
||||||
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<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
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<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
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|||||||
xmlns:xhtml="http://www.w3.org/1999/xhtml">
|
xmlns:xhtml="http://www.w3.org/1999/xhtml">
|
||||||
<url>
|
<url>
|
||||||
<loc>https://alanorth.github.io/cgspace-notes/categories/</loc>
|
<loc>https://alanorth.github.io/cgspace-notes/categories/</loc>
|
||||||
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|
<lastmod>2022-01-01T15:21:32+02:00</lastmod>
|
||||||
</url><url>
|
</url><url>
|
||||||
<loc>https://alanorth.github.io/cgspace-notes/</loc>
|
<loc>https://alanorth.github.io/cgspace-notes/</loc>
|
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|
<lastmod>2022-01-01T15:21:32+02:00</lastmod>
|
||||||
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|
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|
||||||
<loc>https://alanorth.github.io/cgspace-notes/2022-01/</loc>
|
<loc>https://alanorth.github.io/cgspace-notes/2022-01/</loc>
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||||||
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|
<lastmod>2022-01-01T15:21:32+02:00</lastmod>
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||||||
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|
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|
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|
<loc>https://alanorth.github.io/cgspace-notes/categories/notes/</loc>
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|
<lastmod>2022-01-01T15:21:32+02:00</lastmod>
|
||||||
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|
</url><url>
|
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<loc>https://alanorth.github.io/cgspace-notes/posts/</loc>
|
<loc>https://alanorth.github.io/cgspace-notes/posts/</loc>
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||||||
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|
<lastmod>2022-01-01T15:21:32+02:00</lastmod>
|
||||||
</url><url>
|
</url><url>
|
||||||
<loc>https://alanorth.github.io/cgspace-notes/2021-12/</loc>
|
<loc>https://alanorth.github.io/cgspace-notes/2021-12/</loc>
|
||||||
<lastmod>2022-01-09T10:39:51+02:00</lastmod>
|
<lastmod>2021-12-29T16:29:37+02:00</lastmod>
|
||||||
</url><url>
|
</url><url>
|
||||||
<loc>https://alanorth.github.io/cgspace-notes/2021-11/</loc>
|
<loc>https://alanorth.github.io/cgspace-notes/2021-11/</loc>
|
||||||
<lastmod>2021-11-30T16:44:30+02:00</lastmod>
|
<lastmod>2021-11-30T16:44:30+02:00</lastmod>
|
||||||
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Reference in New Issue
Block a user