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Add notes for 2021-05-18

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Alan Orth 2021-05-18 23:21:39 +03:00
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content/posts/2021-02.md
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@ -92,7 +92,6 @@ java.lang.NullPointerException
- Communicate more with CodeObia about some fixes for OpenRXV - Communicate more with CodeObia about some fixes for OpenRXV
- Maria Garruccio sent me some new ORCID iDs for Bioversity authors, as well as a correction for Stefan Burkart's iD - Maria Garruccio sent me some new ORCID iDs for Bioversity authors, as well as a correction for Stefan Burkart's iD
- I saved the new ones to a text file, combined them with the others, extracted the ORCID iDs themselves, and updated the names using `resolve-orcids.py`: - I saved the new ones to a text file, combined them with the others, extracted the ORCID iDs themselves, and updated the names using `resolve-orcids.py`:
- Then for the rest, I saved them to a text file, combined them with the others, extracted the ORCID iDs themselves, and updated the names using `resolve-orcids.py`:
```console ```console
$ cat ~/src/git/DSpace/dspace/config/controlled-vocabularies/cg-creator-id.xml /tmp/bioversity-orcid-ids.txt | grep -oE '[A-Z0-9]{4}-[A-Z0-9]{4}-[A-Z0-9]{4}-[A-Z0-9]{4}' | sort | uniq > /tmp/2021-02-02-combined-orcids.txt $ cat ~/src/git/DSpace/dspace/config/controlled-vocabularies/cg-creator-id.xml /tmp/bioversity-orcid-ids.txt | grep -oE '[A-Z0-9]{4}-[A-Z0-9]{4}-[A-Z0-9]{4}-[A-Z0-9]{4}' | sort | uniq > /tmp/2021-02-02-combined-orcids.txt

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content/posts/2021-05.md
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@ -335,4 +335,47 @@ line 3659 column 23 - Warning: unescaped & or unknown entity "&WA_EU-IFAD"
- After testing whether this escaped value worked during submission, I created and merged a pull request to `6_x-prod` ([#468](https://github.com/ilri/DSpace/pull/468)) - After testing whether this escaped value worked during submission, I created and merged a pull request to `6_x-prod` ([#468](https://github.com/ilri/DSpace/pull/468))
## 2021-05-18
- Paola from the Alliance emailed me some new ORCID identifiers to add to CGSpace
- I saved the new ones to a text file, combined them with the others, extracted the ORCID iDs themselves, and updated the names using `resolve-orcids.py`:
```console
$ cat ~/src/git/DSpace/dspace/config/controlled-vocabularies/cg-creator-identifier.xml /tmp/new | grep -oE '[A-Z0-9]{4}-[A-Z0-9]{4}-[A-Z0-9]{4}-[A-Z0-9]{4}' | sort | uniq > /tmp/2021-05-18-combined.txt
$ ./ilri/resolve-orcids.py -i /tmp/2021-05-18-combined.txt -o /tmp/2021-05-18-combined-names.txt
```
- I sorted the names and added the XML formatting in vim, then ran it through tidy:
```console
$ tidy -xml -utf8 -m -iq -w 0 dspace/config/controlled-vocabularies/cg-creator-identifier.xml
```
- Tag fifty-five items from the Alliance's new authors with ORCID iDs using `add-orcid-identifiers-csv.py`:
```console
$ cat 2021-05-18-add-orcids.csv
dc.contributor.author,cg.creator.identifier
"Urioste Daza, Sergio",Sergio Alejandro Urioste Daza: 0000-0002-3208-032X
"Urioste, Sergio",Sergio Alejandro Urioste Daza: 0000-0002-3208-032X
"Villegas, Daniel",Daniel M. Villegas: 0000-0001-6801-3332
"Villegas, Daniel M.",Daniel M. Villegas: 0000-0001-6801-3332
"Giles, James",James Giles: 0000-0003-1899-9206
"Simbare, Alice",Alice Simbare: 0000-0003-2389-0969
"Simbare, Alice",Alice Simbare: 0000-0003-2389-0969
"Simbare, A.",Alice Simbare: 0000-0003-2389-0969
"Dita Rodriguez, Miguel",Miguel Angel Dita Rodriguez: 0000-0002-0496-4267
"Templer, Noel",Noel Templer: 0000-0002-3201-9043
"Jalonen, R.",Riina Jalonen: 0000-0003-1669-9138
"Jalonen, Riina",Riina Jalonen: 0000-0003-1669-9138
"Izquierdo, Paulo",Paulo Izquierdo: 0000-0002-2153-0655
"Reyes, Byron",Byron Reyes: 0000-0003-2672-9636
"Reyes, Byron A.",Byron Reyes: 0000-0003-2672-9636
$ ./ilri/add-orcid-identifiers-csv.py -i /tmp/2021-05-18-add-orcids.csv -db dspace -u dspace -p 'fuuu' -d
```
- I deployed the latest `6_x-prod` branch on CGSpace, ran all system updates, and rebooted the server
- This included the IWMI changes, so I also migrated the `cg.subject.iwmi` metadata to `dcterms.subject` and deleted the subject term
- Then I started a full Discovery reindex
<!-- vim: set sw=2 ts=2: --> <!-- vim: set sw=2 ts=2: -->