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Add notes for 2021-05-17

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Alan Orth 2021-05-17 18:47:30 +03:00
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52
content/posts/2021-05.md
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@ -282,5 +282,57 @@ $ elasticdump --input=/home/aorth/openrxv-items_data.json --output=http://localh
- Then I started a new harvest on AReS
## 2021-05-17
- The AReS harvest finished and the Elasticsearch indexes seem OK so I shouldn't have to fix them next time...
```console
$ curl -s http://localhost:9200/_cat/indices | grep openrxv-items
yellow open openrxv-items-temp o3ijJLcyTtGMOPeWpAJiVA 1 1 0 0 283b 283b
yellow open openrxv-items-final TrJ1Ict3QZ-vFkj-4VcAzw 1 1 104317 0 259.4mb 259.4mb
$ curl -s 'http://localhost:9200/_alias/' | python -m json.tool
"openrxv-items-temp": {
"aliases": {}
},
"openrxv-items-final": {
"aliases": {
"openrxv-items": {}
}
},
...
```
- Abenet said she and some others can't log into CGSpace
- I tried to check the CGSpace LDAP account and it does seem to be not working:
```console
$ ldapsearch -x -H ldaps://AZCGNEROOT2.CGIARAD.ORG:636/ -b "dc=cgiarad,dc=org" -D "cgspace-ldap@cgiarad.org" -W "(sAMAccountName=aorth)"
Enter LDAP Password:
ldap_bind: Invalid credentials (49)
additional info: 80090308: LdapErr: DSID-0C090453, comment: AcceptSecurityContext error, data 532, v3839
```
- I sent a message to Biruk so he can check the LDAP account
- IWMI confirmed that they do indeed want to move all their subjects to AGROVOC, so I made the changes in the XMLUI and config ([#467](https://github.com/ilri/DSpace/pull/467))
- Then I used the `migrate-fields.sh` script to move them (46,000 metadata entries!)
- I tested Abdullah's latest pull request to add clickable filters to AReS and I think it works
- I had some issues with my local AReS installation so I was only able to do limited testing...
- I will have to wait until I have more time to test before I can merge that
- CCAFS asked me to add eight more phase II project tags to the CGSpace input form
- I extracted the existing ones using xmllint, added the new ones, sorted them, and then replaced them in `input-forms.xml`:
```console
$ xmllint --xpath '//value-pairs[@value-pairs-name="ccafsprojectpii"]/pair/stored-value/node()' dspace/config/input-forms.xml
```
- I formatted the input file with tidy, especially because one of the new project tags has an ampersand character... grrr:
```console
$ tidy -xml -utf8 -m -iq -w 0 dspace/config/input-forms.xml
line 3658 column 26 - Warning: unescaped & or unknown entity "&WA_EU-IFAD"
line 3659 column 23 - Warning: unescaped & or unknown entity "&WA_EU-IFAD"
```
- After testing whether this escaped value worked during submission, I created and merged a pull request to `6_x-prod` ([#468](https://github.com/ilri/DSpace/pull/468))
<!-- vim: set sw=2 ts=2: -->

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@ -20,7 +20,7 @@ I will add the RI/1.0 pattern to our DSpace agents overload and purge them from
<meta property="og:type" content="article" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/2021-05/" />
<meta property="article:published_time" content="2021-05-02T09:50:54+03:00" />
<meta property="article:modified_time" content="2021-05-15T20:28:33+03:00" />
<meta property="article:modified_time" content="2021-05-16T17:11:48+03:00" />
@ -46,9 +46,9 @@ I will add the RI/1.0 pattern to our DSpace agents overload and purge them from
"@type": "BlogPosting",
"headline": "May, 2021",
"url": "https://alanorth.github.io/cgspace-notes/2021-05/",
"wordCount": "1907",
"wordCount": "2245",
"datePublished": "2021-05-02T09:50:54+03:00",
"dateModified": "2021-05-15T20:28:33+03:00",
"dateModified": "2021-05-16T17:11:48+03:00",
"author": {
"@type": "Person",
"name": "Alan Orth"
@ -399,6 +399,63 @@ $ elasticdump --input=/home/aorth/openrxv-items_data.json --output=http://localh
</code></pre><ul>
<li>Then I started a new harvest on AReS</li>
</ul>
<h2 id="2021-05-17">2021-05-17</h2>
<ul>
<li>The AReS harvest finished and the Elasticsearch indexes seem OK so I shouldn&rsquo;t have to fix them next time&hellip;</li>
</ul>
<pre><code class="language-console" data-lang="console">$ curl -s http://localhost:9200/_cat/indices | grep openrxv-items
yellow open openrxv-items-temp o3ijJLcyTtGMOPeWpAJiVA 1 1 0 0 283b 283b
yellow open openrxv-items-final TrJ1Ict3QZ-vFkj-4VcAzw 1 1 104317 0 259.4mb 259.4mb
$ curl -s 'http://localhost:9200/_alias/' | python -m json.tool
&quot;openrxv-items-temp&quot;: {
&quot;aliases&quot;: {}
},
&quot;openrxv-items-final&quot;: {
&quot;aliases&quot;: {
&quot;openrxv-items&quot;: {}
}
},
...
</code></pre><ul>
<li>Abenet said she and some others can&rsquo;t log into CGSpace
<ul>
<li>I tried to check the CGSpace LDAP account and it does seem to be not working:</li>
</ul>
</li>
</ul>
<pre><code class="language-console" data-lang="console">$ ldapsearch -x -H ldaps://AZCGNEROOT2.CGIARAD.ORG:636/ -b &quot;dc=cgiarad,dc=org&quot; -D &quot;cgspace-ldap@cgiarad.org&quot; -W &quot;(sAMAccountName=aorth)&quot;
Enter LDAP Password:
ldap_bind: Invalid credentials (49)
additional info: 80090308: LdapErr: DSID-0C090453, comment: AcceptSecurityContext error, data 532, v3839
</code></pre><ul>
<li>I sent a message to Biruk so he can check the LDAP account</li>
<li>IWMI confirmed that they do indeed want to move all their subjects to AGROVOC, so I made the changes in the XMLUI and config (<a href="https://github.com/ilri/DSpace/pull/467">#467</a>)
<ul>
<li>Then I used the <code>migrate-fields.sh</code> script to move them (46,000 metadata entries!)</li>
</ul>
</li>
<li>I tested Abdullah&rsquo;s latest pull request to add clickable filters to AReS and I think it works
<ul>
<li>I had some issues with my local AReS installation so I was only able to do limited testing&hellip;</li>
<li>I will have to wait until I have more time to test before I can merge that</li>
</ul>
</li>
<li>CCAFS asked me to add eight more phase II project tags to the CGSpace input form
<ul>
<li>I extracted the existing ones using xmllint, added the new ones, sorted them, and then replaced them in <code>input-forms.xml</code>:</li>
</ul>
</li>
</ul>
<pre><code class="language-console" data-lang="console">$ xmllint --xpath '//value-pairs[@value-pairs-name=&quot;ccafsprojectpii&quot;]/pair/stored-value/node()' dspace/config/input-forms.xml
</code></pre><ul>
<li>I formatted the input file with tidy, especially because one of the new project tags has an ampersand character&hellip; grrr:</li>
</ul>
<pre><code class="language-console" data-lang="console">$ tidy -xml -utf8 -m -iq -w 0 dspace/config/input-forms.xml
line 3658 column 26 - Warning: unescaped &amp; or unknown entity &quot;&amp;WA_EU-IFAD&quot;
line 3659 column 23 - Warning: unescaped &amp; or unknown entity &quot;&amp;WA_EU-IFAD&quot;
</code></pre><ul>
<li>After testing whether this escaped value worked during submission, I created and merged a pull request to <code>6_x-prod</code> (<a href="https://github.com/ilri/DSpace/pull/468">#468</a>)</li>
</ul>
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