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Add notes for 2023-03-07
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@ -62,5 +62,23 @@ df = pd.read_csv(args.input_file, engine='pyarrow', dtype='string[pyarrow]'
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## 2023-03-07
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- Create a PostgreSQL 14 instance on my local environment to start testing compatibility with DSpace 6 as well as all my scripts:
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```console
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$ podman pull docker.io/library/postgres:14-alpine
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$ podman run --name dspacedb14 -v dspacedb14_data:/var/lib/postgresql/data -e POSTGRES_PASSWORD=postgres -p 5432:5432 -d postgres:14-alpine
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$ createuser -h localhost -p 5432 -U postgres --pwprompt dspacetest
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$ createdb -h localhost -p 5432 -U postgres -O dspacetest --encoding=UNICODE dspacetest
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```
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- Peter sent me a list of items that had ILRI affiation on Altmetric, but that didn't have Handles
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- I ran a duplicate check on them to find if they exist or if we can import them
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- There were about ninety matches, but a few dozen of those were pre-prints!
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- After excluding those there were about sixty-one items we already have on CGSpace so I will add their DOIs to the existing items
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- After joining these with the records from CGSpace and inspecting the DOIs I found that only forty-four were new DOIs
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- Surprisingly some of the DOIs on Altmetric were not working, though we also had some that were not working (specifically the Journal of Agricultural Economics seems to have reassigned DOIs)
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- An unscientific comparison of duplicate checking Peter's file with ~500 titles on PostgreSQL 12 and PostgreSQL 14:
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- PostgreSQL 12: `0.11s user 0.04s system 0% cpu 19:24.65 total`
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- PostgreSQL 14: `0.12s user 0.04s system 0% cpu 18:13.47 total`
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<!-- vim: set sw=2 ts=2: -->
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@ -16,7 +16,7 @@ I finally got through with porting the input form from DSpace 6 to DSpace 7
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<meta property="og:type" content="article" />
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<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/2023-03/" />
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<meta property="article:published_time" content="2023-03-01T07:58:36+03:00" />
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<meta property="article:modified_time" content="2023-03-07T09:53:31+03:00" />
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<meta property="article:modified_time" content="2023-03-07T10:05:12+03:00" />
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@ -38,9 +38,9 @@ I finally got through with porting the input form from DSpace 6 to DSpace 7
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"@type": "BlogPosting",
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"headline": "March, 2023",
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"url": "https://alanorth.github.io/cgspace-notes/2023-03/",
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"wordCount": "381",
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"wordCount": "601",
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"datePublished": "2023-03-01T07:58:36+03:00",
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"dateModified": "2023-03-07T09:53:31+03:00",
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"dateModified": "2023-03-07T10:05:12+03:00",
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"author": {
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"@type": "Person",
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"name": "Alan Orth"
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@ -182,6 +182,33 @@ pd.options.mode.nullable_dtypes = True
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</ul>
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<pre tabindex="0"><code>df = pd.read_csv(args.input_file, engine='pyarrow', dtype='string[pyarrow]'
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</code></pre><h2 id="2023-03-07">2023-03-07</h2>
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<ul>
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<li>Create a PostgreSQL 14 instance on my local environment to start testing compatibility with DSpace 6 as well as all my scripts:</li>
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</ul>
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<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;"><code class="language-console" data-lang="console"><span style="display:flex;"><span>$ podman pull docker.io/library/postgres:14-alpine
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</span></span><span style="display:flex;"><span>$ podman run --name dspacedb14 -v dspacedb14_data:/var/lib/postgresql/data -e POSTGRES_PASSWORD<span style="color:#f92672">=</span>postgres -p 5432:5432 -d postgres:14-alpine
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</span></span><span style="display:flex;"><span>$ createuser -h localhost -p <span style="color:#ae81ff">5432</span> -U postgres --pwprompt dspacetest
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</span></span><span style="display:flex;"><span>$ createdb -h localhost -p <span style="color:#ae81ff">5432</span> -U postgres -O dspacetest --encoding<span style="color:#f92672">=</span>UNICODE dspacetest
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</span></span></code></pre></div><ul>
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<li>Peter sent me a list of items that had ILRI affiation on Altmetric, but that didn’t have Handles
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<ul>
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<li>I ran a duplicate check on them to find if they exist or if we can import them</li>
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<li>There were about ninety matches, but a few dozen of those were pre-prints!</li>
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<li>After excluding those there were about sixty-one items we already have on CGSpace so I will add their DOIs to the existing items
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<ul>
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<li>After joining these with the records from CGSpace and inspecting the DOIs I found that only forty-four were new DOIs</li>
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<li>Surprisingly some of the DOIs on Altmetric were not working, though we also had some that were not working (specifically the Journal of Agricultural Economics seems to have reassigned DOIs)</li>
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</ul>
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</li>
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</ul>
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</li>
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<li>An unscientific comparison of duplicate checking Peter’s file with ~500 titles on PostgreSQL 12 and PostgreSQL 14:
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<ul>
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<li>PostgreSQL 12: <code>0.11s user 0.04s system 0% cpu 19:24.65 total</code></li>
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<li>PostgreSQL 14: <code>0.12s user 0.04s system 0% cpu 18:13.47 total</code></li>
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</ul>
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</li>
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</ul>
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<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
|
||||
<meta property="og:type" content="website" />
|
||||
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" />
|
||||
<meta property="og:updated_time" content="2023-03-07T09:53:31+03:00" />
|
||||
<meta property="og:updated_time" content="2023-03-07T10:05:12+03:00" />
|
||||
|
||||
|
||||
|
||||
|
@ -10,7 +10,7 @@
|
||||
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
|
||||
<meta property="og:type" content="website" />
|
||||
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" />
|
||||
<meta property="og:updated_time" content="2023-03-07T09:53:31+03:00" />
|
||||
<meta property="og:updated_time" content="2023-03-07T10:05:12+03:00" />
|
||||
|
||||
|
||||
|
||||
|
@ -3,19 +3,19 @@
|
||||
xmlns:xhtml="http://www.w3.org/1999/xhtml">
|
||||
<url>
|
||||
<loc>https://alanorth.github.io/cgspace-notes/categories/</loc>
|
||||
<lastmod>2023-03-07T09:53:31+03:00</lastmod>
|
||||
<lastmod>2023-03-07T10:05:12+03:00</lastmod>
|
||||
</url><url>
|
||||
<loc>https://alanorth.github.io/cgspace-notes/</loc>
|
||||
<lastmod>2023-03-07T09:53:31+03:00</lastmod>
|
||||
<lastmod>2023-03-07T10:05:12+03:00</lastmod>
|
||||
</url><url>
|
||||
<loc>https://alanorth.github.io/cgspace-notes/2023-03/</loc>
|
||||
<lastmod>2023-03-07T09:53:31+03:00</lastmod>
|
||||
<lastmod>2023-03-07T10:05:12+03:00</lastmod>
|
||||
</url><url>
|
||||
<loc>https://alanorth.github.io/cgspace-notes/categories/notes/</loc>
|
||||
<lastmod>2023-03-07T09:53:31+03:00</lastmod>
|
||||
<lastmod>2023-03-07T10:05:12+03:00</lastmod>
|
||||
</url><url>
|
||||
<loc>https://alanorth.github.io/cgspace-notes/posts/</loc>
|
||||
<lastmod>2023-03-07T09:53:31+03:00</lastmod>
|
||||
<lastmod>2023-03-07T10:05:12+03:00</lastmod>
|
||||
</url><url>
|
||||
<loc>https://alanorth.github.io/cgspace-notes/2023-02/</loc>
|
||||
<lastmod>2023-03-01T08:30:25+03:00</lastmod>
|
||||
|
Loading…
Reference in New Issue
Block a user