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Add notes for 2018-04-29
This commit is contained in:
parent
be4df4f64f
commit
df0a3f2417
@ -506,3 +506,28 @@ org.apache.tomcat.jdbc.pool.PoolExhaustedException: [localhost-startStop-2] Time
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$ psql dspacetest -c 'alter user dspacetest superuser;'
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$ psql dspacetest -c 'alter user dspacetest superuser;'
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$ pg_restore -O -U dspacetest -d dspacetest -W -h localhost /tmp/dspace_2018-04-18.backup
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$ pg_restore -O -U dspacetest -d dspacetest -W -h localhost /tmp/dspace_2018-04-18.backup
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```
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```
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- There's another issue with Tomcat in Ubuntu 18.04:
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```
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25-Apr-2018 13:26:21.493 SEVERE [http-nio-127.0.0.1-8443-exec-1] org.apache.coyote.AbstractProtocol$ConnectionHandler.process Error reading request, ignored
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java.lang.NoSuchMethodError: java.nio.ByteBuffer.position(I)Ljava/nio/ByteBuffer;
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at org.apache.coyote.http11.Http11InputBuffer.init(Http11InputBuffer.java:688)
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at org.apache.coyote.http11.Http11Processor.service(Http11Processor.java:672)
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at org.apache.coyote.AbstractProcessorLight.process(AbstractProcessorLight.java:66)
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at org.apache.coyote.AbstractProtocol$ConnectionHandler.process(AbstractProtocol.java:790)
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at org.apache.tomcat.util.net.NioEndpoint$SocketProcessor.doRun(NioEndpoint.java:1459)
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at org.apache.tomcat.util.net.SocketProcessorBase.run(SocketProcessorBase.java:49)
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at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
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at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
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at org.apache.tomcat.util.threads.TaskThread$WrappingRunnable.run(TaskThread.java:61)
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at java.lang.Thread.run(Thread.java:748)
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```
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- There's a [Debian bug about this from a few weeks ago](https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=895866)
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- Apparently Tomcat was compiled with Java 9, so doesn't work with Java 8
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## 2018-04-29
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- DSpace Test crashed again, looks like memory issues again
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- JVM heap size was last increased to 6144m but the system only has 8GB total so there's not much we can do here other than get a bigger Linode instance or remove the massive Solr Statistics data
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@ -53,7 +53,7 @@ $ psql -c 'SELECT * from pg_stat_activity;' | grep idle | grep -c cgspac
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"/>
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"/>
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@ -55,7 +55,7 @@ Replace lzop with xz in log compression cron jobs on DSpace Test—it uses less
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"/>
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"/>
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@ -45,7 +45,7 @@ Update GitHub wiki for documentation of maintenance tasks.
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"/>
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"/>
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@ -59,7 +59,7 @@ Also, lots of things like “COTE D`LVOIRE” and “COTE D IVOIRE&r
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"/>
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"/>
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@ -45,7 +45,7 @@ Reinstall my local (Mac OS X) DSpace stack with Tomcat 7, PostgreSQL 9.3, and Ja
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"/>
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@ -49,7 +49,7 @@ Also, I noticed the checker log has some errors we should pay attention to:
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@ -53,7 +53,7 @@ There are 3,000 IPs accessing the REST API in a 24-hour period!
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@ -51,7 +51,7 @@ Working on second phase of metadata migration, looks like this will work for mov
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"/>
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"/>
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@ -67,7 +67,7 @@ In this case the select query was showing 95 results before the update
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"/>
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@ -61,7 +61,7 @@ $ git rebase -i dspace-5.5
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"/>
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"/>
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@ -53,7 +53,7 @@ $ ldapsearch -x -H ldaps://svcgroot2.cgiarad.org:3269/ -b "dc=cgiarad,dc=or
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"/>
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"/>
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@ -61,7 +61,7 @@ I exported a random item’s metadata as CSV, deleted all columns except id
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"/>
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"/>
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@ -45,7 +45,7 @@ Add dc.type to the output options for Atmire’s Listings and Reports module
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"/>
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"/>
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@ -69,7 +69,7 @@ Another worrying error from dspace.log is:
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"/>
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"/>
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@ -45,7 +45,7 @@ I asked on the dspace-tech mailing list because it seems to be broken, and actua
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"/>
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"/>
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@ -73,7 +73,7 @@ Looks like we’ll be using cg.identifier.ccafsprojectpii as the field name
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"/>
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"/>
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@ -77,7 +77,7 @@ $ identify ~/Desktop/alc_contrastes_desafios.jpg
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"/>
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"/>
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@ -63,7 +63,7 @@ $ [dspace]/bin/dspace filter-media -f -i 10568/16498 -p "ImageMagick PDF Th
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"/>
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"/>
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@ -29,7 +29,7 @@
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<meta name="twitter:card" content="summary"/>
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<meta name="twitter:card" content="summary"/>
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<meta name="twitter:title" content="May, 2017"/>
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<meta name="twitter:title" content="May, 2017"/>
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<meta name="twitter:description" content="2017-05-01 ICARDA apparently started working on CG Core on their MEL repository They have done a few cg.* fields, but not very consistent and even copy some of CGSpace items: https://mel.cgiar.org/xmlui/handle/20.500.11766/6911?show=full https://cgspace.cgiar.org/handle/10568/73683 2017-05-02 Atmire got back about the Workflow Statistics issue, and apparently it’s a bug in the CUA module so they will send us a pull request 2017-05-04 Sync DSpace Test with database and assetstore from CGSpace Re-deploy DSpace Test with Atmire’s CUA patch for workflow statistics, run system updates, and restart the server Now I can see the workflow statistics and am able to select users, but everything returns 0 items Megan says there are still some mapped items are not appearing since last week, so I forced a full index-discovery -b Need to remember to check if the collection has more items (currently 39 on CGSpace, but 118 on the freshly reindexed DSPace Test) tomorrow: https://cgspace."/>
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<meta name="twitter:description" content="2017-05-01 ICARDA apparently started working on CG Core on their MEL repository They have done a few cg.* fields, but not very consistent and even copy some of CGSpace items: https://mel.cgiar.org/xmlui/handle/20.500.11766/6911?show=full https://cgspace.cgiar.org/handle/10568/73683 2017-05-02 Atmire got back about the Workflow Statistics issue, and apparently it’s a bug in the CUA module so they will send us a pull request 2017-05-04 Sync DSpace Test with database and assetstore from CGSpace Re-deploy DSpace Test with Atmire’s CUA patch for workflow statistics, run system updates, and restart the server Now I can see the workflow statistics and am able to select users, but everything returns 0 items Megan says there are still some mapped items are not appearing since last week, so I forced a full index-discovery -b Need to remember to check if the collection has more items (currently 39 on CGSpace, but 118 on the freshly reindexed DSPace Test) tomorrow: https://cgspace."/>
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@ -29,7 +29,7 @@
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<meta name="twitter:card" content="summary"/>
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<meta name="twitter:title" content="June, 2017"/>
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<meta name="twitter:description" content="2017-06-01 After discussion with WLE and CGSpace content people, we decided to just add one metadata field for the WLE Research Themes The cg.identifier.wletheme field will be used for both Phase I and Phase II Research Themes Then we’ll create a new sub-community for Phase II and create collections for the research themes there The current “Research Themes” community will be renamed to “WLE Phase I Research Themes” Tagged all items in the current Phase I collections with their appropriate themes Create pull request to add Phase II research themes to the submission form: #328 Add cg."/>
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<meta name="twitter:description" content="2017-06-01 After discussion with WLE and CGSpace content people, we decided to just add one metadata field for the WLE Research Themes The cg.identifier.wletheme field will be used for both Phase I and Phase II Research Themes Then we’ll create a new sub-community for Phase II and create collections for the research themes there The current “Research Themes” community will be renamed to “WLE Phase I Research Themes” Tagged all items in the current Phase I collections with their appropriate themes Create pull request to add Phase II research themes to the submission form: #328 Add cg."/>
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@ -77,7 +77,7 @@ Then I cleaned up the author authorities and HTML characters in OpenRefine and s
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@ -53,7 +53,7 @@ Ask Sisay to clean up the WLE approvers a bit, as Marianne’s user account
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@ -57,7 +57,7 @@ Add Katherine Lutz to the groups for content submission and edit steps of the CG
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@ -47,7 +47,7 @@ The list of connections to XMLUI and REST API for today:
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@ -185,7 +185,7 @@ Danny wrote to ask for help renewing the wildcard ilri.org certificate and I adv
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<meta property="article:published_time" content="2018-04-01T16:13:54+02:00"/>
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<meta property="article:modified_time" content="2018-04-24T16:53:28+03:00"/>
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"url": "https://alanorth.github.io/cgspace-notes/2018-04/",
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"url": "https://alanorth.github.io/cgspace-notes/2018-04/",
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"wordCount": "0",
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"wordCount": "0",
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"datePublished": "2018-04-01T16:13:54+02:00",
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"datePublished": "2018-04-01T16:13:54+02:00",
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"dateModified": "2018-04-24T16:53:28+03:00",
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"dateModified": "2018-04-25T13:15:38+03:00",
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"author": {
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"author": {
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"@type": "Person",
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"@type": "Person",
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"name": "Alan Orth"
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"name": "Alan Orth"
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$ pg_restore -O -U dspacetest -d dspacetest -W -h localhost /tmp/dspace_2018-04-18.backup
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</code></pre>
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</code></pre>
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</ul>
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<pre><code>25-Apr-2018 13:26:21.493 SEVERE [http-nio-127.0.0.1-8443-exec-1] org.apache.coyote.AbstractProtocol$ConnectionHandler.process Error reading request, ignored
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at org.apache.coyote.http11.Http11InputBuffer.init(Http11InputBuffer.java:688)
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at org.apache.coyote.http11.Http11Processor.service(Http11Processor.java:672)
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at org.apache.coyote.AbstractProcessorLight.process(AbstractProcessorLight.java:66)
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at org.apache.coyote.AbstractProtocol$ConnectionHandler.process(AbstractProtocol.java:790)
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at org.apache.tomcat.util.net.NioEndpoint$SocketProcessor.doRun(NioEndpoint.java:1459)
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at org.apache.tomcat.util.net.SocketProcessorBase.run(SocketProcessorBase.java:49)
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at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
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at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
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at org.apache.tomcat.util.threads.TaskThread$WrappingRunnable.run(TaskThread.java:61)
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</code></pre>
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<li>There’s a <a href="https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=895866">Debian bug about this from a few weeks ago</a></li>
|
||||||
|
<li>Apparently Tomcat was compiled with Java 9, so doesn’t work with Java 8</li>
|
||||||
|
</ul>
|
||||||
|
|
||||||
|
<h2 id="2018-04-29">2018-04-29</h2>
|
||||||
|
|
||||||
|
<ul>
|
||||||
|
<li>DSpace Test crashed again, looks like memory issues again</li>
|
||||||
|
<li>JVM heap size was last increased to 6144m but the system only has 8GB total so there’s not much we can do here other than get a bigger Linode instance or remove the massive Solr Statistics data</li>
|
||||||
|
</ul>
|
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|
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<meta name="twitter:title" content="Categories"/>
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<meta name="twitter:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."/>
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<meta name="twitter:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."/>
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<meta name="twitter:title" content="Categories"/>
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<meta name="twitter:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."/>
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<meta name="twitter:title" content="Categories"/>
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<meta name="twitter:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."/>
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<meta name="twitter:card" content="summary"/>
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<meta name="twitter:title" content="Categories"/>
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<meta name="twitter:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."/>
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|
|||||||
<meta name="twitter:card" content="summary"/>
|
<meta name="twitter:card" content="summary"/>
|
||||||
<meta name="twitter:title" content="CGIAR Library Migration"/>
|
<meta name="twitter:title" content="CGIAR Library Migration"/>
|
||||||
<meta name="twitter:description" content="Notes on the migration of the CGIAR Library to CGSpace"/>
|
<meta name="twitter:description" content="Notes on the migration of the CGIAR Library to CGSpace"/>
|
||||||
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|
|||||||
<meta name="twitter:card" content="summary"/>
|
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|
||||||
<meta name="twitter:title" content="CGSpace Notes"/>
|
<meta name="twitter:title" content="CGSpace Notes"/>
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||||||
<meta name="twitter:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."/>
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|
|||||||
<meta name="twitter:card" content="summary"/>
|
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|
||||||
<meta name="twitter:title" content="CGSpace Notes"/>
|
<meta name="twitter:title" content="CGSpace Notes"/>
|
||||||
<meta name="twitter:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."/>
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|
|||||||
<meta name="twitter:card" content="summary"/>
|
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|
||||||
<meta name="twitter:title" content="CGSpace Notes"/>
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||||||
<meta name="twitter:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."/>
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|
|||||||
<meta name="twitter:card" content="summary"/>
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<meta name="twitter:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."/>
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||||||
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|
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||||||
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||||||
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|
|||||||
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|
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|
||||||
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|
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|
||||||
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||||||
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||||||
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|
||||||
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|
||||||
|
@ -4,7 +4,7 @@
|
|||||||
|
|
||||||
<url>
|
<url>
|
||||||
<loc>https://alanorth.github.io/cgspace-notes/2018-04/</loc>
|
<loc>https://alanorth.github.io/cgspace-notes/2018-04/</loc>
|
||||||
<lastmod>2018-04-24T16:53:28+03:00</lastmod>
|
<lastmod>2018-04-25T13:15:38+03:00</lastmod>
|
||||||
</url>
|
</url>
|
||||||
|
|
||||||
<url>
|
<url>
|
||||||
@ -159,7 +159,7 @@
|
|||||||
|
|
||||||
<url>
|
<url>
|
||||||
<loc>https://alanorth.github.io/cgspace-notes/</loc>
|
<loc>https://alanorth.github.io/cgspace-notes/</loc>
|
||||||
<lastmod>2018-04-24T16:53:28+03:00</lastmod>
|
<lastmod>2018-04-25T13:15:38+03:00</lastmod>
|
||||||
<priority>0</priority>
|
<priority>0</priority>
|
||||||
</url>
|
</url>
|
||||||
|
|
||||||
@ -170,7 +170,7 @@
|
|||||||
|
|
||||||
<url>
|
<url>
|
||||||
<loc>https://alanorth.github.io/cgspace-notes/tags/notes/</loc>
|
<loc>https://alanorth.github.io/cgspace-notes/tags/notes/</loc>
|
||||||
<lastmod>2018-04-24T16:53:28+03:00</lastmod>
|
<lastmod>2018-04-25T13:15:38+03:00</lastmod>
|
||||||
<priority>0</priority>
|
<priority>0</priority>
|
||||||
</url>
|
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|
||||||
|
|
||||||
@ -182,13 +182,13 @@
|
|||||||
|
|
||||||
<url>
|
<url>
|
||||||
<loc>https://alanorth.github.io/cgspace-notes/posts/</loc>
|
<loc>https://alanorth.github.io/cgspace-notes/posts/</loc>
|
||||||
<lastmod>2018-04-24T16:53:28+03:00</lastmod>
|
<lastmod>2018-04-25T13:15:38+03:00</lastmod>
|
||||||
<priority>0</priority>
|
<priority>0</priority>
|
||||||
</url>
|
</url>
|
||||||
|
|
||||||
<url>
|
<url>
|
||||||
<loc>https://alanorth.github.io/cgspace-notes/tags/</loc>
|
<loc>https://alanorth.github.io/cgspace-notes/tags/</loc>
|
||||||
<lastmod>2018-04-24T16:53:28+03:00</lastmod>
|
<lastmod>2018-04-25T13:15:38+03:00</lastmod>
|
||||||
<priority>0</priority>
|
<priority>0</priority>
|
||||||
</url>
|
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|
||||||
|
|
||||||
|
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|
|||||||
<meta name="twitter:card" content="summary"/>
|
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|
||||||
<meta name="twitter:title" content="Tags"/>
|
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|
||||||
<meta name="twitter:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."/>
|
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|
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|
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|
|||||||
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|
||||||
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|
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|
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|
||||||
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||||||
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|
||||||
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|
|||||||
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||||||
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|
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||||||
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|
|||||||
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||||||
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|
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|
|||||||
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|
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|
||||||
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|
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|
||||||
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|
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|
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|
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|
||||||
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|
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|
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|
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||||||
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|
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||||||
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|
||||||
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|
||||||
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|
||||||
|
|
||||||
|
Loading…
Reference in New Issue
Block a user