From df0a3f2417f4dad8637ea1d91013fd5324d2a446 Mon Sep 17 00:00:00 2001 From: Alan Orth Date: Sun, 29 Apr 2018 12:36:13 +0300 Subject: [PATCH] Add notes for 2018-04-29 --- content/posts/2018-04.md | 25 +++++++++++++++++ docs/2015-11/index.html | 2 +- docs/2015-12/index.html | 2 +- docs/2016-01/index.html | 2 +- docs/2016-02/index.html | 2 +- docs/2016-03/index.html | 2 +- docs/2016-04/index.html | 2 +- docs/2016-05/index.html | 2 +- docs/2016-06/index.html | 2 +- docs/2016-07/index.html | 2 +- docs/2016-08/index.html | 2 +- docs/2016-09/index.html | 2 +- docs/2016-10/index.html | 2 +- docs/2016-11/index.html | 2 +- docs/2016-12/index.html | 2 +- docs/2017-01/index.html | 2 +- docs/2017-02/index.html | 2 +- docs/2017-03/index.html | 2 +- docs/2017-04/index.html | 2 +- docs/2017-05/index.html | 2 +- docs/2017-06/index.html | 2 +- docs/2017-07/index.html | 2 +- docs/2017-08/index.html | 2 +- docs/2017-09/index.html | 2 +- docs/2017-10/index.html | 2 +- docs/2017-11/index.html | 2 +- docs/2017-12/index.html | 2 +- docs/2018-01/index.html | 2 +- docs/2018-02/index.html | 2 +- docs/2018-03/index.html | 2 +- docs/2018-04/index.html | 36 ++++++++++++++++++++++--- docs/404.html | 2 +- docs/categories/index.html | 2 +- docs/categories/notes/index.html | 2 +- docs/categories/page/2/index.html | 2 +- docs/categories/page/3/index.html | 2 +- docs/categories/page/4/index.html | 2 +- docs/cgiar-library-migration/index.html | 2 +- docs/index.html | 2 +- docs/page/2/index.html | 2 +- docs/page/3/index.html | 2 +- docs/page/4/index.html | 2 +- docs/posts/index.html | 2 +- docs/posts/page/2/index.html | 2 +- docs/posts/page/3/index.html | 2 +- docs/posts/page/4/index.html | 2 +- docs/sitemap.xml | 10 +++---- docs/tags/index.html | 2 +- docs/tags/notes/index.html | 2 +- docs/tags/notes/page/2/index.html | 2 +- docs/tags/notes/page/3/index.html | 2 +- docs/tags/page/2/index.html | 2 +- docs/tags/page/3/index.html | 2 +- docs/tags/page/4/index.html | 2 +- 54 files changed, 114 insertions(+), 59 deletions(-) diff --git a/content/posts/2018-04.md b/content/posts/2018-04.md index 784983db6..d5f4e32e7 100644 --- a/content/posts/2018-04.md +++ b/content/posts/2018-04.md @@ -506,3 +506,28 @@ org.apache.tomcat.jdbc.pool.PoolExhaustedException: [localhost-startStop-2] Time $ psql dspacetest -c 'alter user dspacetest superuser;' $ pg_restore -O -U dspacetest -d dspacetest -W -h localhost /tmp/dspace_2018-04-18.backup ``` + +- There's another issue with Tomcat in Ubuntu 18.04: + +``` +25-Apr-2018 13:26:21.493 SEVERE [http-nio-127.0.0.1-8443-exec-1] org.apache.coyote.AbstractProtocol$ConnectionHandler.process Error reading request, ignored + java.lang.NoSuchMethodError: java.nio.ByteBuffer.position(I)Ljava/nio/ByteBuffer; + at org.apache.coyote.http11.Http11InputBuffer.init(Http11InputBuffer.java:688) + at org.apache.coyote.http11.Http11Processor.service(Http11Processor.java:672) + at org.apache.coyote.AbstractProcessorLight.process(AbstractProcessorLight.java:66) + at org.apache.coyote.AbstractProtocol$ConnectionHandler.process(AbstractProtocol.java:790) + at org.apache.tomcat.util.net.NioEndpoint$SocketProcessor.doRun(NioEndpoint.java:1459) + at org.apache.tomcat.util.net.SocketProcessorBase.run(SocketProcessorBase.java:49) + at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149) + at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624) + at org.apache.tomcat.util.threads.TaskThread$WrappingRunnable.run(TaskThread.java:61) + at java.lang.Thread.run(Thread.java:748) +``` + +- There's a [Debian bug about this from a few weeks ago](https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=895866) +- Apparently Tomcat was compiled with Java 9, so doesn't work with Java 8 + +## 2018-04-29 + +- DSpace Test crashed again, looks like memory issues again +- JVM heap size was last increased to 6144m but the system only has 8GB total so there's not much we can do here other than get a bigger Linode instance or remove the massive Solr Statistics data diff --git a/docs/2015-11/index.html b/docs/2015-11/index.html index 990855fac..594cb01f1 100644 --- a/docs/2015-11/index.html +++ b/docs/2015-11/index.html @@ -53,7 +53,7 @@ $ psql -c 'SELECT * from pg_stat_activity;' | grep idle | grep -c cgspac "/> - + diff --git a/docs/2015-12/index.html b/docs/2015-12/index.html index 240214058..c1cf23795 100644 --- a/docs/2015-12/index.html +++ b/docs/2015-12/index.html @@ -55,7 +55,7 @@ Replace lzop with xz in log compression cron jobs on DSpace Test—it uses less "/> - + diff --git a/docs/2016-01/index.html b/docs/2016-01/index.html index 77c49074a..9f4e75e73 100644 --- a/docs/2016-01/index.html +++ b/docs/2016-01/index.html @@ -45,7 +45,7 @@ Update GitHub wiki for documentation of maintenance tasks. "/> - + diff --git a/docs/2016-02/index.html b/docs/2016-02/index.html index f02491d42..a6057238f 100644 --- a/docs/2016-02/index.html +++ b/docs/2016-02/index.html @@ -59,7 +59,7 @@ Also, lots of things like “COTE D`LVOIRE” and “COTE D IVOIRE&r "/> - + diff --git a/docs/2016-03/index.html b/docs/2016-03/index.html index 281efaaa2..ab0208818 100644 --- a/docs/2016-03/index.html +++ b/docs/2016-03/index.html @@ -45,7 +45,7 @@ Reinstall my local (Mac OS X) DSpace stack with Tomcat 7, PostgreSQL 9.3, and Ja "/> - + diff --git a/docs/2016-04/index.html b/docs/2016-04/index.html index bba45d309..158483646 100644 --- a/docs/2016-04/index.html +++ b/docs/2016-04/index.html @@ -49,7 +49,7 @@ Also, I noticed the checker log has some errors we should pay attention to: "/> - + diff --git a/docs/2016-05/index.html b/docs/2016-05/index.html index 5c36c5a9b..0a435171a 100644 --- a/docs/2016-05/index.html +++ b/docs/2016-05/index.html @@ -53,7 +53,7 @@ There are 3,000 IPs accessing the REST API in a 24-hour period! "/> - + diff --git a/docs/2016-06/index.html b/docs/2016-06/index.html index 55febfe0a..1ccabc7b6 100644 --- a/docs/2016-06/index.html +++ b/docs/2016-06/index.html @@ -51,7 +51,7 @@ Working on second phase of metadata migration, looks like this will work for mov "/> - + diff --git a/docs/2016-07/index.html b/docs/2016-07/index.html index 8f133a551..a5f3398b2 100644 --- a/docs/2016-07/index.html +++ b/docs/2016-07/index.html @@ -67,7 +67,7 @@ In this case the select query was showing 95 results before the update "/> - + diff --git a/docs/2016-08/index.html b/docs/2016-08/index.html index ce5bff1ff..955f9d0af 100644 --- a/docs/2016-08/index.html +++ b/docs/2016-08/index.html @@ -61,7 +61,7 @@ $ git rebase -i dspace-5.5 "/> - + diff --git a/docs/2016-09/index.html b/docs/2016-09/index.html index 303739876..0624f485d 100644 --- a/docs/2016-09/index.html +++ b/docs/2016-09/index.html @@ -53,7 +53,7 @@ $ ldapsearch -x -H ldaps://svcgroot2.cgiarad.org:3269/ -b "dc=cgiarad,dc=or "/> - + diff --git a/docs/2016-10/index.html b/docs/2016-10/index.html index a7b2186a1..bab208f76 100644 --- a/docs/2016-10/index.html +++ b/docs/2016-10/index.html @@ -61,7 +61,7 @@ I exported a random item’s metadata as CSV, deleted all columns except id "/> - + diff --git a/docs/2016-11/index.html b/docs/2016-11/index.html index b4b0810b1..b29401712 100644 --- a/docs/2016-11/index.html +++ b/docs/2016-11/index.html @@ -45,7 +45,7 @@ Add dc.type to the output options for Atmire’s Listings and Reports module "/> - + diff --git a/docs/2016-12/index.html b/docs/2016-12/index.html index 8c359bd57..08db90588 100644 --- a/docs/2016-12/index.html +++ b/docs/2016-12/index.html @@ -69,7 +69,7 @@ Another worrying error from dspace.log is: "/> - + diff --git a/docs/2017-01/index.html b/docs/2017-01/index.html index 7c5e57d92..570076137 100644 --- a/docs/2017-01/index.html +++ b/docs/2017-01/index.html @@ -45,7 +45,7 @@ I asked on the dspace-tech mailing list because it seems to be broken, and actua "/> - + diff --git a/docs/2017-02/index.html b/docs/2017-02/index.html index 3c2ab0c2e..02b3a8c10 100644 --- a/docs/2017-02/index.html +++ b/docs/2017-02/index.html @@ -73,7 +73,7 @@ Looks like we’ll be using cg.identifier.ccafsprojectpii as the field name "/> - + diff --git a/docs/2017-03/index.html b/docs/2017-03/index.html index 67b82cd3f..0ae6aebe3 100644 --- a/docs/2017-03/index.html +++ b/docs/2017-03/index.html @@ -77,7 +77,7 @@ $ identify ~/Desktop/alc_contrastes_desafios.jpg "/> - + diff --git a/docs/2017-04/index.html b/docs/2017-04/index.html index a7ead622e..e1e9495f1 100644 --- a/docs/2017-04/index.html +++ b/docs/2017-04/index.html @@ -63,7 +63,7 @@ $ [dspace]/bin/dspace filter-media -f -i 10568/16498 -p "ImageMagick PDF Th "/> - + diff --git a/docs/2017-05/index.html b/docs/2017-05/index.html index 1cdaee218..a506e0076 100644 --- a/docs/2017-05/index.html +++ b/docs/2017-05/index.html @@ -29,7 +29,7 @@ - + diff --git a/docs/2017-06/index.html b/docs/2017-06/index.html index 6c0929453..4393b90a6 100644 --- a/docs/2017-06/index.html +++ b/docs/2017-06/index.html @@ -29,7 +29,7 @@ - + diff --git a/docs/2017-07/index.html b/docs/2017-07/index.html index 83cb6c031..bb6f72eee 100644 --- a/docs/2017-07/index.html +++ b/docs/2017-07/index.html @@ -57,7 +57,7 @@ We can use PostgreSQL’s extended output format (-x) plus sed to format the "/> - + diff --git a/docs/2017-08/index.html b/docs/2017-08/index.html index 197b2f85f..6a2e2309d 100644 --- a/docs/2017-08/index.html +++ b/docs/2017-08/index.html @@ -77,7 +77,7 @@ Then I cleaned up the author authorities and HTML characters in OpenRefine and s "/> - + diff --git a/docs/2017-09/index.html b/docs/2017-09/index.html index da23bbd91..c7bec218e 100644 --- a/docs/2017-09/index.html +++ b/docs/2017-09/index.html @@ -53,7 +53,7 @@ Ask Sisay to clean up the WLE approvers a bit, as Marianne’s user account "/> - + diff --git a/docs/2017-10/index.html b/docs/2017-10/index.html index a5495f7e0..2c000da17 100644 --- a/docs/2017-10/index.html +++ b/docs/2017-10/index.html @@ -57,7 +57,7 @@ Add Katherine Lutz to the groups for content submission and edit steps of the CG "/> - + diff --git a/docs/2017-11/index.html b/docs/2017-11/index.html index ee1a24aee..0782c60a1 100644 --- a/docs/2017-11/index.html +++ b/docs/2017-11/index.html @@ -77,7 +77,7 @@ COPY 54701 "/> - + diff --git a/docs/2017-12/index.html b/docs/2017-12/index.html index 0e71b8db0..e4bd803c5 100644 --- a/docs/2017-12/index.html +++ b/docs/2017-12/index.html @@ -47,7 +47,7 @@ The list of connections to XMLUI and REST API for today: "/> - + diff --git a/docs/2018-01/index.html b/docs/2018-01/index.html index edd2942b3..01ba5b997 100644 --- a/docs/2018-01/index.html +++ b/docs/2018-01/index.html @@ -185,7 +185,7 @@ Danny wrote to ask for help renewing the wildcard ilri.org certificate and I adv "/> - + diff --git a/docs/2018-02/index.html b/docs/2018-02/index.html index 249e43f9b..26affa5ed 100644 --- a/docs/2018-02/index.html +++ b/docs/2018-02/index.html @@ -47,7 +47,7 @@ I copied the logic in the jmx_tomcat_dbpools provided by Ubuntu’s munin-pl "/> - + diff --git a/docs/2018-03/index.html b/docs/2018-03/index.html index 34b514bd0..db22545bc 100644 --- a/docs/2018-03/index.html +++ b/docs/2018-03/index.html @@ -41,7 +41,7 @@ Export a CSV of the IITA community metadata for Martin Mueller "/> - + diff --git a/docs/2018-04/index.html b/docs/2018-04/index.html index 819109705..b4c4fdb6c 100644 --- a/docs/2018-04/index.html +++ b/docs/2018-04/index.html @@ -21,7 +21,7 @@ Catalina logs at least show some memory errors yesterday: - + @@ -43,7 +43,7 @@ Catalina logs at least show some memory errors yesterday: "/> - + @@ -55,7 +55,7 @@ Catalina logs at least show some memory errors yesterday: "url": "https://alanorth.github.io/cgspace-notes/2018-04/", "wordCount": "0", "datePublished": "2018-04-01T16:13:54+02:00", - "dateModified": "2018-04-24T16:53:28+03:00", + "dateModified": "2018-04-25T13:15:38+03:00", "author": { "@type": "Person", "name": "Alan Orth" @@ -686,6 +686,36 @@ org.apache.tomcat.jdbc.pool.PoolExhaustedException: [localhost-startStop-2] Time $ pg_restore -O -U dspacetest -d dspacetest -W -h localhost /tmp/dspace_2018-04-18.backup + + +
25-Apr-2018 13:26:21.493 SEVERE [http-nio-127.0.0.1-8443-exec-1] org.apache.coyote.AbstractProtocol$ConnectionHandler.process Error reading request, ignored
+ java.lang.NoSuchMethodError: java.nio.ByteBuffer.position(I)Ljava/nio/ByteBuffer;
+        at org.apache.coyote.http11.Http11InputBuffer.init(Http11InputBuffer.java:688)
+        at org.apache.coyote.http11.Http11Processor.service(Http11Processor.java:672)
+        at org.apache.coyote.AbstractProcessorLight.process(AbstractProcessorLight.java:66)
+        at org.apache.coyote.AbstractProtocol$ConnectionHandler.process(AbstractProtocol.java:790)
+        at org.apache.tomcat.util.net.NioEndpoint$SocketProcessor.doRun(NioEndpoint.java:1459)
+        at org.apache.tomcat.util.net.SocketProcessorBase.run(SocketProcessorBase.java:49)
+        at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
+        at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
+        at org.apache.tomcat.util.threads.TaskThread$WrappingRunnable.run(TaskThread.java:61)
+        at java.lang.Thread.run(Thread.java:748)
+
+ + + +

2018-04-29

+ + + diff --git a/docs/404.html b/docs/404.html index fd475809b..3bb64cc83 100644 --- a/docs/404.html +++ b/docs/404.html @@ -26,7 +26,7 @@ - + diff --git a/docs/categories/index.html b/docs/categories/index.html index e48f1af90..2641359bf 100644 --- a/docs/categories/index.html +++ b/docs/categories/index.html @@ -26,7 +26,7 @@ - + diff --git a/docs/categories/notes/index.html b/docs/categories/notes/index.html index 6b22e258a..6692d9340 100644 --- a/docs/categories/notes/index.html +++ b/docs/categories/notes/index.html @@ -26,7 +26,7 @@ - + diff --git a/docs/categories/page/2/index.html b/docs/categories/page/2/index.html index 43c0e8a80..7d836c961 100644 --- a/docs/categories/page/2/index.html +++ b/docs/categories/page/2/index.html @@ -26,7 +26,7 @@ - + diff --git a/docs/categories/page/3/index.html b/docs/categories/page/3/index.html index 1d32712ba..36110c3cc 100644 --- a/docs/categories/page/3/index.html +++ b/docs/categories/page/3/index.html @@ -26,7 +26,7 @@ - + diff --git a/docs/categories/page/4/index.html b/docs/categories/page/4/index.html index f93a22b2a..f8585beea 100644 --- a/docs/categories/page/4/index.html +++ b/docs/categories/page/4/index.html @@ -26,7 +26,7 @@ - + diff --git a/docs/cgiar-library-migration/index.html b/docs/cgiar-library-migration/index.html index 19e014860..9fdf61f9c 100644 --- a/docs/cgiar-library-migration/index.html +++ b/docs/cgiar-library-migration/index.html @@ -29,7 +29,7 @@ - + diff --git a/docs/index.html b/docs/index.html index 37fef574b..f7f2d3ec9 100644 --- a/docs/index.html +++ b/docs/index.html @@ -26,7 +26,7 @@ - + diff --git a/docs/page/2/index.html b/docs/page/2/index.html index 2c56363fb..d70c24920 100644 --- a/docs/page/2/index.html +++ b/docs/page/2/index.html @@ -26,7 +26,7 @@ - + diff --git a/docs/page/3/index.html b/docs/page/3/index.html index 7427f715b..c4b608cfe 100644 --- a/docs/page/3/index.html +++ b/docs/page/3/index.html @@ -26,7 +26,7 @@ - + diff --git a/docs/page/4/index.html b/docs/page/4/index.html index 3d34fa935..edf1dc68a 100644 --- a/docs/page/4/index.html +++ b/docs/page/4/index.html @@ -26,7 +26,7 @@ - + diff --git a/docs/posts/index.html b/docs/posts/index.html index 0733aef47..00c49baa3 100644 --- a/docs/posts/index.html +++ b/docs/posts/index.html @@ -26,7 +26,7 @@ - + diff --git a/docs/posts/page/2/index.html b/docs/posts/page/2/index.html index f363ecf4c..b29b4565c 100644 --- a/docs/posts/page/2/index.html +++ b/docs/posts/page/2/index.html @@ -26,7 +26,7 @@ - + diff --git a/docs/posts/page/3/index.html b/docs/posts/page/3/index.html index 718355486..299f24976 100644 --- a/docs/posts/page/3/index.html +++ b/docs/posts/page/3/index.html @@ -26,7 +26,7 @@ - + diff --git a/docs/posts/page/4/index.html b/docs/posts/page/4/index.html index 434c68a92..26487a734 100644 --- a/docs/posts/page/4/index.html +++ b/docs/posts/page/4/index.html @@ -26,7 +26,7 @@ - + diff --git a/docs/sitemap.xml b/docs/sitemap.xml index 3eb6a3927..7163b8a95 100644 --- a/docs/sitemap.xml +++ b/docs/sitemap.xml @@ -4,7 +4,7 @@ https://alanorth.github.io/cgspace-notes/2018-04/ - 2018-04-24T16:53:28+03:00 + 2018-04-25T13:15:38+03:00 @@ -159,7 +159,7 @@ https://alanorth.github.io/cgspace-notes/ - 2018-04-24T16:53:28+03:00 + 2018-04-25T13:15:38+03:00 0 @@ -170,7 +170,7 @@ https://alanorth.github.io/cgspace-notes/tags/notes/ - 2018-04-24T16:53:28+03:00 + 2018-04-25T13:15:38+03:00 0 @@ -182,13 +182,13 @@ https://alanorth.github.io/cgspace-notes/posts/ - 2018-04-24T16:53:28+03:00 + 2018-04-25T13:15:38+03:00 0 https://alanorth.github.io/cgspace-notes/tags/ - 2018-04-24T16:53:28+03:00 + 2018-04-25T13:15:38+03:00 0 diff --git a/docs/tags/index.html b/docs/tags/index.html index da64508bd..621a0c289 100644 --- a/docs/tags/index.html +++ b/docs/tags/index.html @@ -26,7 +26,7 @@ - + diff --git a/docs/tags/notes/index.html b/docs/tags/notes/index.html index d1b591c72..15296c995 100644 --- a/docs/tags/notes/index.html +++ b/docs/tags/notes/index.html @@ -26,7 +26,7 @@ - + diff --git a/docs/tags/notes/page/2/index.html b/docs/tags/notes/page/2/index.html index 4ec02c65e..16134e269 100644 --- a/docs/tags/notes/page/2/index.html +++ b/docs/tags/notes/page/2/index.html @@ -26,7 +26,7 @@ - + diff --git a/docs/tags/notes/page/3/index.html b/docs/tags/notes/page/3/index.html index 9de36612c..038da357d 100644 --- a/docs/tags/notes/page/3/index.html +++ b/docs/tags/notes/page/3/index.html @@ -26,7 +26,7 @@ - + diff --git a/docs/tags/page/2/index.html b/docs/tags/page/2/index.html index 288339528..b72318e80 100644 --- a/docs/tags/page/2/index.html +++ b/docs/tags/page/2/index.html @@ -26,7 +26,7 @@ - + diff --git a/docs/tags/page/3/index.html b/docs/tags/page/3/index.html index b98605d86..c88971f97 100644 --- a/docs/tags/page/3/index.html +++ b/docs/tags/page/3/index.html @@ -26,7 +26,7 @@ - + diff --git a/docs/tags/page/4/index.html b/docs/tags/page/4/index.html index 0d5400aa8..538513168 100644 --- a/docs/tags/page/4/index.html +++ b/docs/tags/page/4/index.html @@ -26,7 +26,7 @@ - +