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@ -153,4 +153,136 @@ $ curl -v "https://dspace7test.ilri.org/api/core/items" -H "Authorization: Beare
- Start a harvest on AReS
## 2023-01-16
- Batch import four IFPRI items for CGIAR Initiative on Low-Emission Food Systems
- Batch import another twenty-eight items for IFPRI across several Initiatives
- On this one I did quite a bit of extra work to check for CRPs and data/code URLs in the acknowledgements, licenses, volume/issue/extent, etc
- I fixed some authors, an ISBN, and added extra AGROVOC keywords from the abstracts
- Then I checked for duplicates and ran it through csv-metadata-quality to make sure the countries/regions matched and there were no duplicate metadata values
## 2023-01-17
- Batch import another twenty-three items for IFPRI across several Initiatives
- I checked the IFPRI eBrary for extra CRPs and data/code URLs in the acknowledgements, licenses, volume/issue/extent, etc
- I fixed some authors, an ISBN, and added extra AGROVOC keywords from the abstracts
- Then I found and removed one duplicate in these items, as well as another on CGSpace already (!): 10568/126669
- Then I ran it through csv-metadata-quality to make sure the countries/regions matched and there were no duplicate metadata values
- I exported the Initiatives collection to check the mappings, regions, and other metadata with csv-metadata-quality
- I also added a bunch of ORCID identifiers to my list and tagged 837 new metadata values on CGSpace
- There is a high load on CGSpace pretty regularly
- Looking at Munin it shows there is a marked increase in DSpace sessions the last few weeks:
![DSpace sessions year](/cgspace-notes/2023/01/jmx_dspace_sessions-year.png)
- Is this attributable to all the PRMS harvesting?
- I also see some PostgreSQL locks starting earlier today:
![PostgreSQL locks day](/cgspace-notes/2023/01/postgres_connections_ALL-day.png)
- I'm curious to see what kinds of IPs have been connecting, so I will look at the last few weeks:
```console
# zcat --force /var/log/nginx/{rest,access,library-access,oai}.log /var/log/nginx/{rest,access,library-access,oai}.log.1 /var/log/nginx/{rest,access,library-access,oai}.log.{2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25}.gz | awk '{print $1}' | sort | uniq > /tmp/2023-01-17-cgspace-ips.txt
# wc -l /tmp/2023-01-17-cgspace-ips.txt
129446 /tmp/2023-01-17-cgspace-ips.txt
```
- I ran the IPs through my `resolve-addresses-geoip2.py` script to resolve their ASNs/networks, then extracted some lists of data center ISPs by eyeballing them (Amazon, Google, Microsoft, Apple, DigitalOcean, HostRoyale, and a dozen others):
```console
$ csvgrep -c asn -r '^(8075|714|16276|15169|23576|24940|13238|32934|14061|12876|55286|203020|204287|7922|50245|6939|16509|14618)$' \
/tmp/2023-01-17-cgspace-ips.csv | csvcut -c network | \
sed 1d | sort | uniq > /tmp/networks-to-block.txt
$ wc -l /tmp/networks-to-block.txt
776 /tmp/networks-to-block.txt
```
- I added the list of networks to nginx's `bot-networks.conf` so they will all be heavily rate limited
- Looking at the Munin stats again I see the load has been extra high since yesterday morning:
![CPU week](/cgspace-notes/2023/01/cpu-week.png)
- But still, it's suspicious that there are so many PostgreSQL locks
- Looking at the Solr stats to check the hits the last month (actually I skipped December because I was so busy)
- I see 31.148.223.10 is on ALFA TELECOM s.r.o. in Russia and it made 43,000 requests this month (and 400,000 more last month!)
- I see 18.203.245.60 is on Amazon and it uses weird user agents, different with each request
- I see 3.249.192.212 is on Amazon and it uses weird user agents, different with each request
- I see 34.244.160.145 is on Amazon and it uses weird user agents, different with each request
- I see 52.213.59.101 is on Amazon and it uses weird user agents, different with each request
- I see 91.209.8.29 is in Bulgaria on DGM EOOD and is low risk according to Scamlytics, but their user agent is all lower case and it's a data center ISP so nope
- I see 54.78.176.127 is on Amazon and it uses weird user agents, different with each request
- I see 54.246.128.111 is on Amazon and it uses weird user agents, different with each request
- I see 54.74.197.53 is on Amazon and it uses weird user agents, different with each request
- I see 52.16.103.133 is on Amazon and it uses weird user agents, different with each request
- I see 63.32.99.252 is on Amazon and it uses weird user agents, different with each request
- I see 176.34.141.181 is on Amazon and it uses weird user agents, different with each request
- I see 34.243.17.80 is on Amazon and it uses weird user agents, different with each request
- I see 34.240.206.16 is on Amazon and it uses weird user agents, different with each request
- I see 18.203.81.120 is on Amazon and it uses weird user agents, different with each request
- I see 176.97.210.106 is on Tube Hosting and is rate VERY BAD, malicious, scammy on everything I checked
- I see 79.110.73.54 is on ALFA TELCOM / Serverel and is using a different, weird user agent with each request
- There are too many to count... so I will purge these and then move on to user agents
- I purged hits from those IPs:
```console
$ ./ilri/check-spider-ip-hits.sh -f /tmp/ips.txt -p
Purging 439185 hits from 31.148.223.10 in statistics
Purging 2151 hits from 18.203.245.60 in statistics
Purging 1990 hits from 3.249.192.212 in statistics
Purging 1975 hits from 34.244.160.145 in statistics
Purging 1969 hits from 52.213.59.101 in statistics
Purging 2540 hits from 91.209.8.29 in statistics
Purging 1624 hits from 54.78.176.127 in statistics
Purging 1236 hits from 54.74.197.53 in statistics
Purging 1327 hits from 54.246.128.111 in statistics
Purging 1108 hits from 52.16.103.133 in statistics
Purging 1045 hits from 63.32.99.252 in statistics
Purging 999 hits from 176.34.141.181 in statistics
Purging 997 hits from 34.243.17.80 in statistics
Purging 985 hits from 34.240.206.16 in statistics
Purging 862 hits from 18.203.81.120 in statistics
Purging 1654 hits from 176.97.210.106 in statistics
Purging 1628 hits from 51.81.193.200 in statistics
Purging 1020 hits from 79.110.73.54 in statistics
Purging 842 hits from 35.153.105.213 in statistics
Purging 1689 hits from 54.164.237.125 in statistics
Total number of bot hits purged: 466826
```
- Looking at user agents in Solr statistics from 2022-12 and 2023-01 I see some weird ones:
- `azure-logic-apps/1.0 (workflow e1f855704d6543f48be6205c40f4083f; version 08585300079823949478) microsoft-flow/1.0`
- `Gov employment data scraper ([[your email]])`
- `Microsoft.Data.Mashup (https://go.microsoft.com/fwlink/?LinkID=304225)`
- `crownpeak`
- `Mozilla/5.0 (compatible)`
- Also, a ton of them are lower case, which I've never seen before... it might be possible, but looks super fishy to me:
- `mozilla/5.0 (x11; ubuntu; linux x86_64; rv:84.0) gecko/20100101 firefox/86.0`
- `mozilla/5.0 (macintosh; intel mac os x 11_3) applewebkit/537.36 (khtml, like gecko) chrome/89.0.4389.90 safari/537.36`
- `mozilla/5.0 (windows nt 10.0; win64; x64) applewebkit/537.36 (khtml, like gecko) chrome/86.0.4240.75 safari/537.36`
- `mozilla/5.0 (windows nt 10.0; win64; x64; rv:86.0) gecko/20100101 firefox/86.0`
- `mozilla/5.0 (x11; linux x86_64) applewebkit/537.36 (khtml, like gecko) chrome/90.0.4430.93 safari/537.36`
- `mozilla/5.0 (windows nt 10.0; win64; x64) applewebkit/537.36 (khtml, like gecko) chrome/92.0.4515.159 safari/537.36`
- `mozilla/5.0 (windows nt 10.0; win64; x64) applewebkit/537.36 (khtml, like gecko) chrome/88.0.4324.104 safari/537.36`
- `mozilla/5.0 (x11; linux x86_64) applewebkit/537.36 (khtml, like gecko) chrome/86.0.4240.75 safari/537.36`
- I purged some of those:
```console
$ ./ilri/check-spider-hits.sh -f /tmp/agents.txt -p
Purging 1658 hits from azure-logic-apps\/1.0 in statistics
Purging 948 hits from Gov employment data scraper in statistics
Purging 786 hits from Microsoft\.Data\.Mashup in statistics
Purging 303 hits from crownpeak in statistics
Purging 332 hits from Mozilla\/5.0 (compatible) in statistics
Total number of bot hits purged: 4027
```
- Then I ran all system updates on the server and rebooted it
- Hopefully this clears the locks and the nginx mitigation helps with the load from non-human hosts in large data centers
- I need to re-work how I'm doing this whitelisting and blacklisting... it's way too complicated now
- Export entire CGSpace to check Initiative mappings, and add nineteen...
- Start a harvest on AReS
<!-- vim: set sw=2 ts=2: -->

151
docs/2023-01/index.html
View File

@ -19,7 +19,7 @@ I see we have some new ones that aren&rsquo;t in our list if I combine with this
<meta property="og:type" content="article" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/2023-01/" />
<meta property="article:published_time" content="2023-01-01T08:44:36+03:00" />
<meta property="article:modified_time" content="2023-01-12T23:11:42+03:00" />
<meta property="article:modified_time" content="2023-01-15T08:10:16+03:00" />
@ -44,9 +44,9 @@ I see we have some new ones that aren&rsquo;t in our list if I combine with this
"@type": "BlogPosting",
"headline": "January, 2023",
"url": "https://alanorth.github.io/cgspace-notes/2023-01/",
"wordCount": "1103",
"wordCount": "2250",
"datePublished": "2023-01-01T08:44:36+03:00",
"dateModified": "2023-01-12T23:11:42+03:00",
"dateModified": "2023-01-15T08:10:16+03:00",
"author": {
"@type": "Person",
"name": "Alan Orth"
@ -307,6 +307,151 @@ I see we have some new ones that aren&rsquo;t in our list if I combine with this
<ul>
<li>Start a harvest on AReS</li>
</ul>
<h2 id="2023-01-16">2023-01-16</h2>
<ul>
<li>Batch import four IFPRI items for CGIAR Initiative on Low-Emission Food Systems</li>
<li>Batch import another twenty-eight items for IFPRI across several Initiatives
<ul>
<li>On this one I did quite a bit of extra work to check for CRPs and data/code URLs in the acknowledgements, licenses, volume/issue/extent, etc</li>
<li>I fixed some authors, an ISBN, and added extra AGROVOC keywords from the abstracts</li>
<li>Then I checked for duplicates and ran it through csv-metadata-quality to make sure the countries/regions matched and there were no duplicate metadata values</li>
</ul>
</li>
</ul>
<h2 id="2023-01-17">2023-01-17</h2>
<ul>
<li>Batch import another twenty-three items for IFPRI across several Initiatives
<ul>
<li>I checked the IFPRI eBrary for extra CRPs and data/code URLs in the acknowledgements, licenses, volume/issue/extent, etc</li>
<li>I fixed some authors, an ISBN, and added extra AGROVOC keywords from the abstracts</li>
<li>Then I found and removed one duplicate in these items, as well as another on CGSpace already (!): 10568/126669</li>
<li>Then I ran it through csv-metadata-quality to make sure the countries/regions matched and there were no duplicate metadata values</li>
</ul>
</li>
<li>I exported the Initiatives collection to check the mappings, regions, and other metadata with csv-metadata-quality</li>
<li>I also added a bunch of ORCID identifiers to my list and tagged 837 new metadata values on CGSpace</li>
<li>There is a high load on CGSpace pretty regularly
<ul>
<li>Looking at Munin it shows there is a marked increase in DSpace sessions the last few weeks:</li>
</ul>
</li>
</ul>
<p><img src="/cgspace-notes/2023/01/jmx_dspace_sessions-year.png" alt="DSpace sessions year"></p>
<ul>
<li>Is this attributable to all the PRMS harvesting?</li>
<li>I also see some PostgreSQL locks starting earlier today:</li>
</ul>
<p><img src="/cgspace-notes/2023/01/postgres_connections_ALL-day.png" alt="PostgreSQL locks day"></p>
<ul>
<li>I&rsquo;m curious to see what kinds of IPs have been connecting, so I will look at the last few weeks:</li>
</ul>
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;"><code class="language-console" data-lang="console"><span style="display:flex;"><span># zcat --force /var/log/nginx/<span style="color:#f92672">{</span>rest,access,library-access,oai<span style="color:#f92672">}</span>.log /var/log/nginx/<span style="color:#f92672">{</span>rest,access,library-access,oai<span style="color:#f92672">}</span>.log.1 /var/log/nginx/<span style="color:#f92672">{</span>rest,access,library-access,oai<span style="color:#f92672">}</span>.log.<span style="color:#f92672">{</span>2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25<span style="color:#f92672">}</span>.gz | awk <span style="color:#e6db74">&#39;{print $1}&#39;</span> | sort | uniq &gt; /tmp/2023-01-17-cgspace-ips.txt
</span></span><span style="display:flex;"><span># wc -l /tmp/2023-01-17-cgspace-ips.txt
</span></span><span style="display:flex;"><span>129446 /tmp/2023-01-17-cgspace-ips.txt
</span></span></code></pre></div><ul>
<li>I ran the IPs through my <code>resolve-addresses-geoip2.py</code> script to resolve their ASNs/networks, then extracted some lists of data center ISPs by eyeballing them (Amazon, Google, Microsoft, Apple, DigitalOcean, HostRoyale, and a dozen others):</li>
</ul>
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;"><code class="language-console" data-lang="console"><span style="display:flex;"><span>$ csvgrep -c asn -r <span style="color:#e6db74">&#39;^(8075|714|16276|15169|23576|24940|13238|32934|14061|12876|55286|203020|204287|7922|50245|6939|16509|14618)$&#39;</span> <span style="color:#ae81ff">\
</span></span></span><span style="display:flex;"><span><span style="color:#ae81ff"></span> /tmp/2023-01-17-cgspace-ips.csv | csvcut -c network | \
</span></span><span style="display:flex;"><span> sed 1d | sort | uniq &gt; /tmp/networks-to-block.txt
</span></span><span style="display:flex;"><span>$ wc -l /tmp/networks-to-block.txt
</span></span><span style="display:flex;"><span>776 /tmp/networks-to-block.txt
</span></span></code></pre></div><ul>
<li>I added the list of networks to nginx&rsquo;s <code>bot-networks.conf</code> so they will all be heavily rate limited</li>
<li>Looking at the Munin stats again I see the load has been extra high since yesterday morning:</li>
</ul>
<p><img src="/cgspace-notes/2023/01/cpu-week.png" alt="CPU week"></p>
<ul>
<li>But still, it&rsquo;s suspicious that there are so many PostgreSQL locks</li>
<li>Looking at the Solr stats to check the hits the last month (actually I skipped December because I was so busy)
<ul>
<li>I see 31.148.223.10 is on ALFA TELECOM s.r.o. in Russia and it made 43,000 requests this month (and 400,000 more last month!)</li>
<li>I see 18.203.245.60 is on Amazon and it uses weird user agents, different with each request</li>
<li>I see 3.249.192.212 is on Amazon and it uses weird user agents, different with each request</li>
<li>I see 34.244.160.145 is on Amazon and it uses weird user agents, different with each request</li>
<li>I see 52.213.59.101 is on Amazon and it uses weird user agents, different with each request</li>
<li>I see 91.209.8.29 is in Bulgaria on DGM EOOD and is low risk according to Scamlytics, but their user agent is all lower case and it&rsquo;s a data center ISP so nope</li>
<li>I see 54.78.176.127 is on Amazon and it uses weird user agents, different with each request</li>
<li>I see 54.246.128.111 is on Amazon and it uses weird user agents, different with each request</li>
<li>I see 54.74.197.53 is on Amazon and it uses weird user agents, different with each request</li>
<li>I see 52.16.103.133 is on Amazon and it uses weird user agents, different with each request</li>
<li>I see 63.32.99.252 is on Amazon and it uses weird user agents, different with each request</li>
<li>I see 176.34.141.181 is on Amazon and it uses weird user agents, different with each request</li>
<li>I see 34.243.17.80 is on Amazon and it uses weird user agents, different with each request</li>
<li>I see 34.240.206.16 is on Amazon and it uses weird user agents, different with each request</li>
<li>I see 18.203.81.120 is on Amazon and it uses weird user agents, different with each request</li>
<li>I see 176.97.210.106 is on Tube Hosting and is rate VERY BAD, malicious, scammy on everything I checked</li>
<li>I see 79.110.73.54 is on ALFA TELCOM / Serverel and is using a different, weird user agent with each request</li>
<li>There are too many to count&hellip; so I will purge these and then move on to user agents</li>
</ul>
</li>
<li>I purged hits from those IPs:</li>
</ul>
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;"><code class="language-console" data-lang="console"><span style="display:flex;"><span>$ ./ilri/check-spider-ip-hits.sh -f /tmp/ips.txt -p
</span></span><span style="display:flex;"><span>Purging 439185 hits from 31.148.223.10 in statistics
</span></span><span style="display:flex;"><span>Purging 2151 hits from 18.203.245.60 in statistics
</span></span><span style="display:flex;"><span>Purging 1990 hits from 3.249.192.212 in statistics
</span></span><span style="display:flex;"><span>Purging 1975 hits from 34.244.160.145 in statistics
</span></span><span style="display:flex;"><span>Purging 1969 hits from 52.213.59.101 in statistics
</span></span><span style="display:flex;"><span>Purging 2540 hits from 91.209.8.29 in statistics
</span></span><span style="display:flex;"><span>Purging 1624 hits from 54.78.176.127 in statistics
</span></span><span style="display:flex;"><span>Purging 1236 hits from 54.74.197.53 in statistics
</span></span><span style="display:flex;"><span>Purging 1327 hits from 54.246.128.111 in statistics
</span></span><span style="display:flex;"><span>Purging 1108 hits from 52.16.103.133 in statistics
</span></span><span style="display:flex;"><span>Purging 1045 hits from 63.32.99.252 in statistics
</span></span><span style="display:flex;"><span>Purging 999 hits from 176.34.141.181 in statistics
</span></span><span style="display:flex;"><span>Purging 997 hits from 34.243.17.80 in statistics
</span></span><span style="display:flex;"><span>Purging 985 hits from 34.240.206.16 in statistics
</span></span><span style="display:flex;"><span>Purging 862 hits from 18.203.81.120 in statistics
</span></span><span style="display:flex;"><span>Purging 1654 hits from 176.97.210.106 in statistics
</span></span><span style="display:flex;"><span>Purging 1628 hits from 51.81.193.200 in statistics
</span></span><span style="display:flex;"><span>Purging 1020 hits from 79.110.73.54 in statistics
</span></span><span style="display:flex;"><span>Purging 842 hits from 35.153.105.213 in statistics
</span></span><span style="display:flex;"><span>Purging 1689 hits from 54.164.237.125 in statistics
</span></span><span style="display:flex;"><span><span style="color:#960050;background-color:#1e0010">
</span></span></span><span style="display:flex;"><span><span style="color:#960050;background-color:#1e0010"></span>Total number of bot hits purged: 466826
</span></span></code></pre></div><ul>
<li>Looking at user agents in Solr statistics from 2022-12 and 2023-01 I see some weird ones:
<ul>
<li><code>azure-logic-apps/1.0 (workflow e1f855704d6543f48be6205c40f4083f; version 08585300079823949478) microsoft-flow/1.0</code></li>
<li><code>Gov employment data scraper ([[your email]])</code></li>
<li><code>Microsoft.Data.Mashup (https://go.microsoft.com/fwlink/?LinkID=304225)</code></li>
<li><code>crownpeak</code></li>
<li><code>Mozilla/5.0 (compatible)</code></li>
</ul>
</li>
<li>Also, a ton of them are lower case, which I&rsquo;ve never seen before&hellip; it might be possible, but looks super fishy to me:
<ul>
<li><code>mozilla/5.0 (x11; ubuntu; linux x86_64; rv:84.0) gecko/20100101 firefox/86.0</code></li>
<li><code>mozilla/5.0 (macintosh; intel mac os x 11_3) applewebkit/537.36 (khtml, like gecko) chrome/89.0.4389.90 safari/537.36</code></li>
<li><code>mozilla/5.0 (windows nt 10.0; win64; x64) applewebkit/537.36 (khtml, like gecko) chrome/86.0.4240.75 safari/537.36</code></li>
<li><code>mozilla/5.0 (windows nt 10.0; win64; x64; rv:86.0) gecko/20100101 firefox/86.0</code></li>
<li><code>mozilla/5.0 (x11; linux x86_64) applewebkit/537.36 (khtml, like gecko) chrome/90.0.4430.93 safari/537.36</code></li>
<li><code>mozilla/5.0 (windows nt 10.0; win64; x64) applewebkit/537.36 (khtml, like gecko) chrome/92.0.4515.159 safari/537.36</code></li>
<li><code>mozilla/5.0 (windows nt 10.0; win64; x64) applewebkit/537.36 (khtml, like gecko) chrome/88.0.4324.104 safari/537.36</code></li>
<li><code>mozilla/5.0 (x11; linux x86_64) applewebkit/537.36 (khtml, like gecko) chrome/86.0.4240.75 safari/537.36</code></li>
</ul>
</li>
<li>I purged some of those:</li>
</ul>
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;"><code class="language-console" data-lang="console"><span style="display:flex;"><span>$ ./ilri/check-spider-hits.sh -f /tmp/agents.txt -p
</span></span><span style="display:flex;"><span>Purging 1658 hits from azure-logic-apps\/1.0 in statistics
</span></span><span style="display:flex;"><span>Purging 948 hits from Gov employment data scraper in statistics
</span></span><span style="display:flex;"><span>Purging 786 hits from Microsoft\.Data\.Mashup in statistics
</span></span><span style="display:flex;"><span>Purging 303 hits from crownpeak in statistics
</span></span><span style="display:flex;"><span>Purging 332 hits from Mozilla\/5.0 (compatible) in statistics
</span></span><span style="display:flex;"><span><span style="color:#960050;background-color:#1e0010">
</span></span></span><span style="display:flex;"><span><span style="color:#960050;background-color:#1e0010"></span>Total number of bot hits purged: 4027
</span></span></code></pre></div><ul>
<li>Then I ran all system updates on the server and rebooted it
<ul>
<li>Hopefully this clears the locks and the nginx mitigation helps with the load from non-human hosts in large data centers</li>
<li>I need to re-work how I&rsquo;m doing this whitelisting and blacklisting&hellip; it&rsquo;s way too complicated now</li>
</ul>
</li>
<li>Export entire CGSpace to check Initiative mappings, and add nineteen&hellip;</li>
<li>Start a harvest on AReS</li>
</ul>
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@ -10,7 +10,7 @@
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