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Add notes for 2020-10-21
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@ -562,6 +562,7 @@ $ curl -XPOST http://localhost:9200/openrxv-values/_doc/_bulk -H "Content-Type:
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- Bosede said they were having problems with the "Access" step during item submission
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- I looked at the Munin graphs for PostgreSQL and both connections and locks look normal so I'm not sure what it could be
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- I restarted the PostgreSQL service just to see if that would help
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- She said she was still experiencing the issue...
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- I ran the `dspace cleanup -v` process on CGSpace and got an error:
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```
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@ -609,4 +610,22 @@ $ curl -s 'http://localhost:8083/solr/statistics/update?softCommit=true'
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- Is this an issue with Atmire's modules?
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- I sent them feedback on the ticket
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## 2020-10-21
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- Peter needs to do some reporting on gender across the entirety of CGSpace so he asked me to tag a bunch of items with the AGROVOC "gender" subject (in CGIAR Gender Platform community, all ILRI items with subject "gender" or "women", all CCAFS with "gender and social inclusion" etc)
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- First I exported the Gender Platform community and tagged all the items there with "gender" in OpenRefine
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- Then I exported all of CGSpace and extracted just the ILRI and other center-specific tags with `csvcut`:
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```
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$ export JAVA_OPTS="-Dfile.encoding=UTF-8 -Xmx2048m"
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$ dspace metadata-export -f /tmp/cgspace.csv
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$ csvcut -c 'id,dc.subject[],dc.subject[en_US],cg.subject.ilri[],cg.subject.ilri[en_US],cg.subject.alliancebiovciat[],cg.subject.alliancebiovciat[en_US],cg.subject.bioversity[en_US],cg.subject.ccafs[],cg.subject.ccafs[en_US],cg.subject.ciat[],cg.subject.ciat[en_US],cg.subject.cip[],cg.subject.cip[en_US],cg.subject.cpwf[en_US],cg.subject.iita,cg.subject.iita[en_US],cg.subject.iwmi[en_US]' /tmp/cgspace.csv > /tmp/cgspace-subjects.csv
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```
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- Then I went through all center subjects looking for "WOMEN" or "GENDER" and checking if they were missing the associated AGROVOC subject
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- To reduce the size of the CSV file I removed all center subject columns after filtering them, and I flagged all rows that I changed so I could upload a CSV with only the items that were modified
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- In total it was about 1,100 items that I tagged across the Gender Platform community and elsewhere
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- Also, I ran the CSVs through my `csv-metadata-quality` checker to do basic sanity checks, which ended up removing a few dozen duplicated subjects
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<!-- vim: set sw=2 ts=2: -->
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@ -23,7 +23,7 @@ During the FlywayDB migration I got an error:
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<meta property="og:type" content="article" />
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<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/2020-10/" />
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<meta property="article:published_time" content="2020-10-06T16:55:54+03:00" />
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<meta property="article:modified_time" content="2020-10-19T15:47:59+03:00" />
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<meta property="article:modified_time" content="2020-10-19T17:22:49+03:00" />
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<meta name="twitter:card" content="summary"/>
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<meta name="twitter:title" content="October, 2020"/>
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@ -51,9 +51,9 @@ During the FlywayDB migration I got an error:
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"@type": "BlogPosting",
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"headline": "October, 2020",
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"url": "https://alanorth.github.io/cgspace-notes/2020-10/",
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"wordCount": "3963",
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"wordCount": "4171",
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"datePublished": "2020-10-06T16:55:54+03:00",
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"dateModified": "2020-10-19T15:47:59+03:00",
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"dateModified": "2020-10-19T17:22:49+03:00",
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"author": {
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"@type": "Person",
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"name": "Alan Orth"
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@ -754,6 +754,7 @@ $ curl -XPOST http://localhost:9200/openrxv-values/_doc/_bulk -H "Content-T
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<ul>
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<li>I looked at the Munin graphs for PostgreSQL and both connections and locks look normal so I’m not sure what it could be</li>
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<li>I restarted the PostgreSQL service just to see if that would help</li>
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<li>She said she was still experiencing the issue…</li>
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</ul>
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</li>
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<li>I ran the <code>dspace cleanup -v</code> process on CGSpace and got an error:</li>
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@ -804,6 +805,27 @@ $ curl -s 'http://localhost:8083/solr/statistics/update?softCommit=true'
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</ul>
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</li>
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</ul>
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<h2 id="2020-10-21">2020-10-21</h2>
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<ul>
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<li>Peter needs to do some reporting on gender across the entirety of CGSpace so he asked me to tag a bunch of items with the AGROVOC “gender” subject (in CGIAR Gender Platform community, all ILRI items with subject “gender” or “women”, all CCAFS with “gender and social inclusion” etc)
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<ul>
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<li>First I exported the Gender Platform community and tagged all the items there with “gender” in OpenRefine</li>
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<li>Then I exported all of CGSpace and extracted just the ILRI and other center-specific tags with <code>csvcut</code>:</li>
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</ul>
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</li>
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</ul>
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<pre><code>$ export JAVA_OPTS="-Dfile.encoding=UTF-8 -Xmx2048m"
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$ dspace metadata-export -f /tmp/cgspace.csv
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$ csvcut -c 'id,dc.subject[],dc.subject[en_US],cg.subject.ilri[],cg.subject.ilri[en_US],cg.subject.alliancebiovciat[],cg.subject.alliancebiovciat[en_US],cg.subject.bioversity[en_US],cg.subject.ccafs[],cg.subject.ccafs[en_US],cg.subject.ciat[],cg.subject.ciat[en_US],cg.subject.cip[],cg.subject.cip[en_US],cg.subject.cpwf[en_US],cg.subject.iita,cg.subject.iita[en_US],cg.subject.iwmi[en_US]' /tmp/cgspace.csv > /tmp/cgspace-subjects.csv
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</code></pre><ul>
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<li>Then I went through all center subjects looking for “WOMEN” or “GENDER” and checking if they were missing the associated AGROVOC subject
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<ul>
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<li>To reduce the size of the CSV file I removed all center subject columns after filtering them, and I flagged all rows that I changed so I could upload a CSV with only the items that were modified</li>
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<li>In total it was about 1,100 items that I tagged across the Gender Platform community and elsewhere</li>
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<li>Also, I ran the CSVs through my <code>csv-metadata-quality</code> checker to do basic sanity checks, which ended up removing a few dozen duplicated subjects</li>
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</ul>
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</li>
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</ul>
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<!-- raw HTML omitted -->
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@ -9,7 +9,7 @@
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<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
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<meta property="og:type" content="website" />
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<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/" />
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<meta property="og:updated_time" content="2020-10-19T15:47:59+03:00" />
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<meta property="og:updated_time" content="2020-10-19T17:22:49+03:00" />
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<meta name="twitter:card" content="summary"/>
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<meta name="twitter:title" content="Categories"/>
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<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
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<meta property="og:type" content="website" />
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<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/notes/" />
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<meta name="twitter:title" content="Notes"/>
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<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
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<meta property="og:type" content="website" />
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<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/notes/" />
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<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
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<meta property="og:type" content="website" />
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<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/notes/" />
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<meta property="og:updated_time" content="2020-10-19T15:47:59+03:00" />
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<meta property="og:updated_time" content="2020-10-19T17:22:49+03:00" />
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<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
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<meta property="og:type" content="website" />
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<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/notes/" />
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<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
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<meta property="og:type" content="website" />
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<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />
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<meta name="twitter:title" content="CGSpace Notes"/>
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<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
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<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />
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<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
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<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />
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<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" />
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<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" />
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<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
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@ -4,27 +4,27 @@
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<url>
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<loc>https://alanorth.github.io/cgspace-notes/categories/</loc>
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<lastmod>2020-10-19T15:47:59+03:00</lastmod>
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<lastmod>2020-10-19T17:22:49+03:00</lastmod>
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</url>
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<url>
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<loc>https://alanorth.github.io/cgspace-notes/</loc>
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<lastmod>2020-10-19T15:47:59+03:00</lastmod>
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<lastmod>2020-10-19T17:22:49+03:00</lastmod>
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</url>
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<url>
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<loc>https://alanorth.github.io/cgspace-notes/categories/notes/</loc>
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<lastmod>2020-10-19T15:47:59+03:00</lastmod>
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<lastmod>2020-10-19T17:22:49+03:00</lastmod>
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</url>
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<url>
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<loc>https://alanorth.github.io/cgspace-notes/2020-10/</loc>
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<lastmod>2020-10-19T15:47:59+03:00</lastmod>
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<lastmod>2020-10-19T17:22:49+03:00</lastmod>
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</url>
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<url>
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<loc>https://alanorth.github.io/cgspace-notes/posts/</loc>
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<lastmod>2020-10-19T15:47:59+03:00</lastmod>
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<lastmod>2020-10-19T17:22:49+03:00</lastmod>
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</url>
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|
||||
<url>
|
||||
|
||||
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Reference in New Issue
Block a user