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Add notes for 2020-09-03

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Alan Orth 2020-09-03 13:50:56 +03:00
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93 changed files with 1591 additions and 690 deletions
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60
content/posts/2020-09.md
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@ -49,4 +49,64 @@ $ ldapsearch -x -H ldaps://AZCGNEROOT2.CGIARAD.ORG:636/ -b "dc=cgiarad,dc=org" -
- Run all system updates on DSpace Test (linode26) and reboot it - Run all system updates on DSpace Test (linode26) and reboot it
- After the restart LDAP login works... - After the restart LDAP login works...
## 2020-09-03
- Fix some erroneous "review status" fields that Abenet noticed on AReS
- I used my `fix-metadata-values.py` and `delete-metadata-values.py` scripts with the following input files:
```
$ cat 2020-09-03-fix-review-status.csv
dc.description.version,correct
Externally Peer Reviewed,Peer Review
Peer Reviewed,Peer Review
Peer review,Peer Review
Peer reviewed,Peer Review
Peer-Reviewed,Peer Review
Peer-reviewed,Peer Review
peer Review,Peer Review
$ cat 2020-09-03-delete-review-status.csv
dc.description.version
Report
Formally Published
Poster
Unrefereed reprint
$ ./delete-metadata-values.py -i 2020-09-03-delete-review-status.csv -db dspace -u dspace -p 'fuuu' -f dc.description.version -m 68
$ ./fix-metadata-values.py -i 2020-09-03-fix-review-status.csv -db dspace -u dspace -p 'fuuu' -f dc.description.version -t 'correct' -m 68
```
- Start reviewing 95 items for IITA (20201stbatch)
- I used my [csv-metadata-quality](https://github.com/ilri/csv-metadata-quality) tool to check and fix some low-hanging fruit first
- This fixed a few unnecessary Unicode, excessive whitespace, invalid multi-value separator, and duplicate metadata values
- Then I looked at the data in OpenRefine and noticed some things:
- All issue dates use year only, but some have months in the citation so they could be more specific
- I normalized all the DOIs to use "https://doi.org" format
- I fixed a few AGROVOC subjects with a simple GREL: `value.replace("GRAINS","GRAIN").replace("SOILS","SOIL").replace("CORN","MAIZE")`
- But there are a few more that are invalid that she will have to look at
- I uploaded the items to [DSpace Test](https://dspacetest.cgiar.org/handle/10568/108357) and it was apparently successful but I get these errors to the console:
```
Thu Sep 03 12:26:33 CEST 2020 | Query:containerItem:ea7a2648-180d-4fce-bdc5-c3aa2304fc58
Error while updating
java.lang.NullPointerException
at com.atmire.dspace.cua.CUASolrLoggerServiceImpl$5.visit(SourceFile:1131)
at com.atmire.dspace.cua.CUASolrLoggerServiceImpl.visitEachStatisticShard(SourceFile:212)
at com.atmire.dspace.cua.CUASolrLoggerServiceImpl.update(SourceFile:1104)
at com.atmire.dspace.cua.CUASolrLoggerServiceImpl.update(SourceFile:1093)
at org.dspace.statistics.StatisticsLoggingConsumer.consume(SourceFile:104)
at org.dspace.event.BasicDispatcher.consume(BasicDispatcher.java:177)
at org.dspace.event.BasicDispatcher.dispatch(BasicDispatcher.java:123)
at org.dspace.core.Context.dispatchEvents(Context.java:455)
at org.dspace.core.Context.commit(Context.java:424)
at org.dspace.core.Context.complete(Context.java:380)
at org.dspace.app.bulkedit.MetadataImport.main(MetadataImport.java:1399)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.dspace.app.launcher.ScriptLauncher.runOneCommand(ScriptLauncher.java:229)
at org.dspace.app.launcher.ScriptLauncher.main(ScriptLauncher.java:81)
```
- There are more in the DSpace log so I will raise it with Atmire immediately
<!-- vim: set sw=2 ts=2: --> <!-- vim: set sw=2 ts=2: -->

4
docs/2015-11/index.html
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@ -239,6 +239,8 @@ db.statementpool = true
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-09/">September, 2020</a></li>
<li><a href="/cgspace-notes/2020-08/">August, 2020</a></li> <li><a href="/cgspace-notes/2020-08/">August, 2020</a></li>
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li> <li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
@ -247,8 +249,6 @@ db.statementpool = true
<li><a href="/cgspace-notes/2020-05/">May, 2020</a></li> <li><a href="/cgspace-notes/2020-05/">May, 2020</a></li>
<li><a href="/cgspace-notes/2020-04/">April, 2020</a></li>
</ol> </ol>
</section> </section>

4
docs/2015-12/index.html
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@ -261,6 +261,8 @@ $ curl -o /dev/null -s -w %{time_total}\\n https://cgspace.cgiar.org/rest/handle
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-09/">September, 2020</a></li>
<li><a href="/cgspace-notes/2020-08/">August, 2020</a></li> <li><a href="/cgspace-notes/2020-08/">August, 2020</a></li>
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li> <li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
@ -269,8 +271,6 @@ $ curl -o /dev/null -s -w %{time_total}\\n https://cgspace.cgiar.org/rest/handle
<li><a href="/cgspace-notes/2020-05/">May, 2020</a></li> <li><a href="/cgspace-notes/2020-05/">May, 2020</a></li>
<li><a href="/cgspace-notes/2020-04/">April, 2020</a></li>
</ol> </ol>
</section> </section>

4
docs/2016-01/index.html
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@ -197,6 +197,8 @@ $ find SimpleArchiveForBio/ -iname &ldquo;*.pdf&rdquo; -exec basename {} ; | sor
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-09/">September, 2020</a></li>
<li><a href="/cgspace-notes/2020-08/">August, 2020</a></li> <li><a href="/cgspace-notes/2020-08/">August, 2020</a></li>
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li> <li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
@ -205,8 +207,6 @@ $ find SimpleArchiveForBio/ -iname &ldquo;*.pdf&rdquo; -exec basename {} ; | sor
<li><a href="/cgspace-notes/2020-05/">May, 2020</a></li> <li><a href="/cgspace-notes/2020-05/">May, 2020</a></li>
<li><a href="/cgspace-notes/2020-04/">April, 2020</a></li>
</ol> </ol>
</section> </section>

4
docs/2016-02/index.html
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@ -375,6 +375,8 @@ Bitstream: tést señora alimentación.pdf
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-09/">September, 2020</a></li>
<li><a href="/cgspace-notes/2020-08/">August, 2020</a></li> <li><a href="/cgspace-notes/2020-08/">August, 2020</a></li>
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li> <li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
@ -383,8 +385,6 @@ Bitstream: tést señora alimentación.pdf
<li><a href="/cgspace-notes/2020-05/">May, 2020</a></li> <li><a href="/cgspace-notes/2020-05/">May, 2020</a></li>
<li><a href="/cgspace-notes/2020-04/">April, 2020</a></li>
</ol> </ol>
</section> </section>

4
docs/2016-03/index.html
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@ -313,6 +313,8 @@ Reinstall my local (Mac OS X) DSpace stack with Tomcat 7, PostgreSQL 9.3, and Ja
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-09/">September, 2020</a></li>
<li><a href="/cgspace-notes/2020-08/">August, 2020</a></li> <li><a href="/cgspace-notes/2020-08/">August, 2020</a></li>
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li> <li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
@ -321,8 +323,6 @@ Reinstall my local (Mac OS X) DSpace stack with Tomcat 7, PostgreSQL 9.3, and Ja
<li><a href="/cgspace-notes/2020-05/">May, 2020</a></li> <li><a href="/cgspace-notes/2020-05/">May, 2020</a></li>
<li><a href="/cgspace-notes/2020-04/">April, 2020</a></li>
</ol> </ol>
</section> </section>

4
docs/2016-04/index.html
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@ -492,6 +492,8 @@ dspace.log.2016-04-27:7271
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-09/">September, 2020</a></li>
<li><a href="/cgspace-notes/2020-08/">August, 2020</a></li> <li><a href="/cgspace-notes/2020-08/">August, 2020</a></li>
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li> <li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
@ -500,8 +502,6 @@ dspace.log.2016-04-27:7271
<li><a href="/cgspace-notes/2020-05/">May, 2020</a></li> <li><a href="/cgspace-notes/2020-05/">May, 2020</a></li>
<li><a href="/cgspace-notes/2020-04/">April, 2020</a></li>
</ol> </ol>
</section> </section>

4
docs/2016-05/index.html
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@ -368,6 +368,8 @@ sys 0m20.540s
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-09/">September, 2020</a></li>
<li><a href="/cgspace-notes/2020-08/">August, 2020</a></li> <li><a href="/cgspace-notes/2020-08/">August, 2020</a></li>
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li> <li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
@ -376,8 +378,6 @@ sys 0m20.540s
<li><a href="/cgspace-notes/2020-05/">May, 2020</a></li> <li><a href="/cgspace-notes/2020-05/">May, 2020</a></li>
<li><a href="/cgspace-notes/2020-04/">April, 2020</a></li>
</ol> </ol>
</section> </section>

4
docs/2016-06/index.html
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@ -406,6 +406,8 @@ $ ./delete-metadata-values.py -f dc.contributor.corporate -i Corporate-Authors-D
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-09/">September, 2020</a></li>
<li><a href="/cgspace-notes/2020-08/">August, 2020</a></li> <li><a href="/cgspace-notes/2020-08/">August, 2020</a></li>
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li> <li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
@ -414,8 +416,6 @@ $ ./delete-metadata-values.py -f dc.contributor.corporate -i Corporate-Authors-D
<li><a href="/cgspace-notes/2020-05/">May, 2020</a></li> <li><a href="/cgspace-notes/2020-05/">May, 2020</a></li>
<li><a href="/cgspace-notes/2020-04/">April, 2020</a></li>
</ol> </ol>
</section> </section>

4
docs/2016-07/index.html
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@ -322,6 +322,8 @@ discovery.index.authority.ignore-variants=true
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-09/">September, 2020</a></li>
<li><a href="/cgspace-notes/2020-08/">August, 2020</a></li> <li><a href="/cgspace-notes/2020-08/">August, 2020</a></li>
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li> <li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
@ -330,8 +332,6 @@ discovery.index.authority.ignore-variants=true
<li><a href="/cgspace-notes/2020-05/">May, 2020</a></li> <li><a href="/cgspace-notes/2020-05/">May, 2020</a></li>
<li><a href="/cgspace-notes/2020-04/">April, 2020</a></li>
</ol> </ol>
</section> </section>

4
docs/2016-08/index.html
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@ -386,6 +386,8 @@ $ JAVA_OPTS=&quot;-Dfile.encoding=UTF-8 -Xmx512m&quot; /home/cgspace.cgiar.org/b
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-09/">September, 2020</a></li>
<li><a href="/cgspace-notes/2020-08/">August, 2020</a></li> <li><a href="/cgspace-notes/2020-08/">August, 2020</a></li>
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li> <li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
@ -394,8 +396,6 @@ $ JAVA_OPTS=&quot;-Dfile.encoding=UTF-8 -Xmx512m&quot; /home/cgspace.cgiar.org/b
<li><a href="/cgspace-notes/2020-05/">May, 2020</a></li> <li><a href="/cgspace-notes/2020-05/">May, 2020</a></li>
<li><a href="/cgspace-notes/2020-04/">April, 2020</a></li>
</ol> </ol>
</section> </section>

4
docs/2016-09/index.html
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@ -603,6 +603,8 @@ $ ./delete-metadata-values.py -i ilrisubjects-delete-13.csv -f cg.subject.ilri -
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-09/">September, 2020</a></li>
<li><a href="/cgspace-notes/2020-08/">August, 2020</a></li> <li><a href="/cgspace-notes/2020-08/">August, 2020</a></li>
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li> <li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
@ -611,8 +613,6 @@ $ ./delete-metadata-values.py -i ilrisubjects-delete-13.csv -f cg.subject.ilri -
<li><a href="/cgspace-notes/2020-05/">May, 2020</a></li> <li><a href="/cgspace-notes/2020-05/">May, 2020</a></li>
<li><a href="/cgspace-notes/2020-04/">April, 2020</a></li>
</ol> </ol>
</section> </section>

4
docs/2016-10/index.html
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@ -369,6 +369,8 @@ dspace=# update metadatavalue set text_value = regexp_replace(text_value, 'http:
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-09/">September, 2020</a></li>
<li><a href="/cgspace-notes/2020-08/">August, 2020</a></li> <li><a href="/cgspace-notes/2020-08/">August, 2020</a></li>
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li> <li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
@ -377,8 +379,6 @@ dspace=# update metadatavalue set text_value = regexp_replace(text_value, 'http:
<li><a href="/cgspace-notes/2020-05/">May, 2020</a></li> <li><a href="/cgspace-notes/2020-05/">May, 2020</a></li>
<li><a href="/cgspace-notes/2020-04/">April, 2020</a></li>
</ol> </ol>
</section> </section>

4
docs/2016-11/index.html
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@ -545,6 +545,8 @@ org.dspace.discovery.SearchServiceException: Error executing query
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-09/">September, 2020</a></li>
<li><a href="/cgspace-notes/2020-08/">August, 2020</a></li> <li><a href="/cgspace-notes/2020-08/">August, 2020</a></li>
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li> <li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
@ -553,8 +555,6 @@ org.dspace.discovery.SearchServiceException: Error executing query
<li><a href="/cgspace-notes/2020-05/">May, 2020</a></li> <li><a href="/cgspace-notes/2020-05/">May, 2020</a></li>
<li><a href="/cgspace-notes/2020-04/">April, 2020</a></li>
</ol> </ol>
</section> </section>

4
docs/2016-12/index.html
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@ -781,6 +781,8 @@ $ exit
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-09/">September, 2020</a></li>
<li><a href="/cgspace-notes/2020-08/">August, 2020</a></li> <li><a href="/cgspace-notes/2020-08/">August, 2020</a></li>
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li> <li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
@ -789,8 +791,6 @@ $ exit
<li><a href="/cgspace-notes/2020-05/">May, 2020</a></li> <li><a href="/cgspace-notes/2020-05/">May, 2020</a></li>
<li><a href="/cgspace-notes/2020-04/">April, 2020</a></li>
</ol> </ol>
</section> </section>

4
docs/2017-01/index.html
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@ -366,6 +366,8 @@ $ gs -sDEVICE=pdfwrite -dCompatibilityLevel=1.4 -dPDFSETTINGS=/ebook -dNOPAUSE -
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-09/">September, 2020</a></li>
<li><a href="/cgspace-notes/2020-08/">August, 2020</a></li> <li><a href="/cgspace-notes/2020-08/">August, 2020</a></li>
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li> <li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
@ -374,8 +376,6 @@ $ gs -sDEVICE=pdfwrite -dCompatibilityLevel=1.4 -dPDFSETTINGS=/ebook -dNOPAUSE -
<li><a href="/cgspace-notes/2020-05/">May, 2020</a></li> <li><a href="/cgspace-notes/2020-05/">May, 2020</a></li>
<li><a href="/cgspace-notes/2020-04/">April, 2020</a></li>
</ol> </ol>
</section> </section>

4
docs/2017-02/index.html
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@ -421,6 +421,8 @@ COPY 1968
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-09/">September, 2020</a></li>
<li><a href="/cgspace-notes/2020-08/">August, 2020</a></li> <li><a href="/cgspace-notes/2020-08/">August, 2020</a></li>
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li> <li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
@ -429,8 +431,6 @@ COPY 1968
<li><a href="/cgspace-notes/2020-05/">May, 2020</a></li> <li><a href="/cgspace-notes/2020-05/">May, 2020</a></li>
<li><a href="/cgspace-notes/2020-04/">April, 2020</a></li>
</ol> </ol>
</section> </section>

4
docs/2017-03/index.html
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@ -352,6 +352,8 @@ $ ./delete-metadata-values.py -i Investors-Delete-121.csv -f dc.description.spon
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-09/">September, 2020</a></li>
<li><a href="/cgspace-notes/2020-08/">August, 2020</a></li> <li><a href="/cgspace-notes/2020-08/">August, 2020</a></li>
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li> <li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
@ -360,8 +362,6 @@ $ ./delete-metadata-values.py -i Investors-Delete-121.csv -f dc.description.spon
<li><a href="/cgspace-notes/2020-05/">May, 2020</a></li> <li><a href="/cgspace-notes/2020-05/">May, 2020</a></li>
<li><a href="/cgspace-notes/2020-04/">April, 2020</a></li>
</ol> </ol>
</section> </section>

4
docs/2017-04/index.html
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@ -582,6 +582,8 @@ $ gem install compass -v 1.0.3
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-09/">September, 2020</a></li>
<li><a href="/cgspace-notes/2020-08/">August, 2020</a></li> <li><a href="/cgspace-notes/2020-08/">August, 2020</a></li>
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li> <li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
@ -590,8 +592,6 @@ $ gem install compass -v 1.0.3
<li><a href="/cgspace-notes/2020-05/">May, 2020</a></li> <li><a href="/cgspace-notes/2020-05/">May, 2020</a></li>
<li><a href="/cgspace-notes/2020-04/">April, 2020</a></li>
</ol> </ol>
</section> </section>

4
docs/2017-05/index.html
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@ -388,6 +388,8 @@ UPDATE 187
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-09/">September, 2020</a></li>
<li><a href="/cgspace-notes/2020-08/">August, 2020</a></li> <li><a href="/cgspace-notes/2020-08/">August, 2020</a></li>
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li> <li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
@ -396,8 +398,6 @@ UPDATE 187
<li><a href="/cgspace-notes/2020-05/">May, 2020</a></li> <li><a href="/cgspace-notes/2020-05/">May, 2020</a></li>
<li><a href="/cgspace-notes/2020-04/">April, 2020</a></li>
</ol> </ol>
</section> </section>

4
docs/2017-06/index.html
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@ -267,6 +267,8 @@ $ JAVA_OPTS=&quot;-Xmx1024m -Dfile.encoding=UTF-8&quot; [dspace]/bin/dspace impo
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-09/">September, 2020</a></li>
<li><a href="/cgspace-notes/2020-08/">August, 2020</a></li> <li><a href="/cgspace-notes/2020-08/">August, 2020</a></li>
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li> <li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
@ -275,8 +277,6 @@ $ JAVA_OPTS=&quot;-Xmx1024m -Dfile.encoding=UTF-8&quot; [dspace]/bin/dspace impo
<li><a href="/cgspace-notes/2020-05/">May, 2020</a></li> <li><a href="/cgspace-notes/2020-05/">May, 2020</a></li>
<li><a href="/cgspace-notes/2020-04/">April, 2020</a></li>
</ol> </ol>
</section> </section>

4
docs/2017-07/index.html
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@ -272,6 +272,8 @@ delete from metadatavalue where resource_type_id=2 and metadata_field_id=235 and
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-09/">September, 2020</a></li>
<li><a href="/cgspace-notes/2020-08/">August, 2020</a></li> <li><a href="/cgspace-notes/2020-08/">August, 2020</a></li>
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li> <li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
@ -280,8 +282,6 @@ delete from metadatavalue where resource_type_id=2 and metadata_field_id=235 and
<li><a href="/cgspace-notes/2020-05/">May, 2020</a></li> <li><a href="/cgspace-notes/2020-05/">May, 2020</a></li>
<li><a href="/cgspace-notes/2020-04/">April, 2020</a></li>
</ol> </ol>
</section> </section>

4
docs/2017-08/index.html
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@ -514,6 +514,8 @@ org.apache.commons.dbcp.SQLNestedException: Cannot get a connection, pool error
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-09/">September, 2020</a></li>
<li><a href="/cgspace-notes/2020-08/">August, 2020</a></li> <li><a href="/cgspace-notes/2020-08/">August, 2020</a></li>
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li> <li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
@ -522,8 +524,6 @@ org.apache.commons.dbcp.SQLNestedException: Cannot get a connection, pool error
<li><a href="/cgspace-notes/2020-05/">May, 2020</a></li> <li><a href="/cgspace-notes/2020-05/">May, 2020</a></li>
<li><a href="/cgspace-notes/2020-04/">April, 2020</a></li>
</ol> </ol>
</section> </section>

4
docs/2017-09/index.html
View File

@ -656,6 +656,8 @@ Cert Status: good
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-09/">September, 2020</a></li>
<li><a href="/cgspace-notes/2020-08/">August, 2020</a></li> <li><a href="/cgspace-notes/2020-08/">August, 2020</a></li>
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li> <li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
@ -664,8 +666,6 @@ Cert Status: good
<li><a href="/cgspace-notes/2020-05/">May, 2020</a></li> <li><a href="/cgspace-notes/2020-05/">May, 2020</a></li>
<li><a href="/cgspace-notes/2020-04/">April, 2020</a></li>
</ol> </ol>
</section> </section>

4
docs/2017-10/index.html
View File

@ -440,6 +440,8 @@ session_id=6C30F10B4351A4ED83EC6ED50AFD6B6A
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-09/">September, 2020</a></li>
<li><a href="/cgspace-notes/2020-08/">August, 2020</a></li> <li><a href="/cgspace-notes/2020-08/">August, 2020</a></li>
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li> <li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
@ -448,8 +450,6 @@ session_id=6C30F10B4351A4ED83EC6ED50AFD6B6A
<li><a href="/cgspace-notes/2020-05/">May, 2020</a></li> <li><a href="/cgspace-notes/2020-05/">May, 2020</a></li>
<li><a href="/cgspace-notes/2020-04/">April, 2020</a></li>
</ol> </ol>
</section> </section>

4
docs/2017-11/index.html
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@ -941,6 +941,8 @@ $ cat dspace.log.2017-11-28 | grep -o -E 'session_id=[A-Z0-9]{32}' | sort -n | u
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-09/">September, 2020</a></li>
<li><a href="/cgspace-notes/2020-08/">August, 2020</a></li> <li><a href="/cgspace-notes/2020-08/">August, 2020</a></li>
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li> <li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
@ -949,8 +951,6 @@ $ cat dspace.log.2017-11-28 | grep -o -E 'session_id=[A-Z0-9]{32}' | sort -n | u
<li><a href="/cgspace-notes/2020-05/">May, 2020</a></li> <li><a href="/cgspace-notes/2020-05/">May, 2020</a></li>
<li><a href="/cgspace-notes/2020-04/">April, 2020</a></li>
</ol> </ol>
</section> </section>

4
docs/2017-12/index.html
View File

@ -780,6 +780,8 @@ DELETE 20
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-09/">September, 2020</a></li>
<li><a href="/cgspace-notes/2020-08/">August, 2020</a></li> <li><a href="/cgspace-notes/2020-08/">August, 2020</a></li>
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li> <li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
@ -788,8 +790,6 @@ DELETE 20
<li><a href="/cgspace-notes/2020-05/">May, 2020</a></li> <li><a href="/cgspace-notes/2020-05/">May, 2020</a></li>
<li><a href="/cgspace-notes/2020-04/">April, 2020</a></li>
</ol> </ol>
</section> </section>

4
docs/2018-01/index.html
View File

@ -1449,6 +1449,8 @@ Catalina:type=Manager,context=/,host=localhost activeSessions 8
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-09/">September, 2020</a></li>
<li><a href="/cgspace-notes/2020-08/">August, 2020</a></li> <li><a href="/cgspace-notes/2020-08/">August, 2020</a></li>
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li> <li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
@ -1457,8 +1459,6 @@ Catalina:type=Manager,context=/,host=localhost activeSessions 8
<li><a href="/cgspace-notes/2020-05/">May, 2020</a></li> <li><a href="/cgspace-notes/2020-05/">May, 2020</a></li>
<li><a href="/cgspace-notes/2020-04/">April, 2020</a></li>
</ol> </ol>
</section> </section>

4
docs/2018-02/index.html
View File

@ -1036,6 +1036,8 @@ UPDATE 3
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-09/">September, 2020</a></li>
<li><a href="/cgspace-notes/2020-08/">August, 2020</a></li> <li><a href="/cgspace-notes/2020-08/">August, 2020</a></li>
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li> <li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
@ -1044,8 +1046,6 @@ UPDATE 3
<li><a href="/cgspace-notes/2020-05/">May, 2020</a></li> <li><a href="/cgspace-notes/2020-05/">May, 2020</a></li>
<li><a href="/cgspace-notes/2020-04/">April, 2020</a></li>
</ol> </ol>
</section> </section>

4
docs/2018-03/index.html
View File

@ -582,6 +582,8 @@ Fixed 5 occurences of: GENEBANKS
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-09/">September, 2020</a></li>
<li><a href="/cgspace-notes/2020-08/">August, 2020</a></li> <li><a href="/cgspace-notes/2020-08/">August, 2020</a></li>
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li> <li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
@ -590,8 +592,6 @@ Fixed 5 occurences of: GENEBANKS
<li><a href="/cgspace-notes/2020-05/">May, 2020</a></li> <li><a href="/cgspace-notes/2020-05/">May, 2020</a></li>
<li><a href="/cgspace-notes/2020-04/">April, 2020</a></li>
</ol> </ol>
</section> </section>

4
docs/2018-04/index.html
View File

@ -591,6 +591,8 @@ $ pg_restore -O -U dspacetest -d dspacetest -W -h localhost /tmp/dspace_2018-04-
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-09/">September, 2020</a></li>
<li><a href="/cgspace-notes/2020-08/">August, 2020</a></li> <li><a href="/cgspace-notes/2020-08/">August, 2020</a></li>
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li> <li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
@ -599,8 +601,6 @@ $ pg_restore -O -U dspacetest -d dspacetest -W -h localhost /tmp/dspace_2018-04-
<li><a href="/cgspace-notes/2020-05/">May, 2020</a></li> <li><a href="/cgspace-notes/2020-05/">May, 2020</a></li>
<li><a href="/cgspace-notes/2020-04/">April, 2020</a></li>
</ol> </ol>
</section> </section>

4
docs/2018-05/index.html
View File

@ -520,6 +520,8 @@ $ psql -h localhost -U postgres dspacetest
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-09/">September, 2020</a></li>
<li><a href="/cgspace-notes/2020-08/">August, 2020</a></li> <li><a href="/cgspace-notes/2020-08/">August, 2020</a></li>
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li> <li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
@ -528,8 +530,6 @@ $ psql -h localhost -U postgres dspacetest
<li><a href="/cgspace-notes/2020-05/">May, 2020</a></li> <li><a href="/cgspace-notes/2020-05/">May, 2020</a></li>
<li><a href="/cgspace-notes/2020-04/">April, 2020</a></li>
</ol> </ol>
</section> </section>

4
docs/2018-06/index.html
View File

@ -514,6 +514,8 @@ $ sed '/^id/d' 10568-*.csv | csvcut -c 1,2 &gt; map-to-cifor-archive.csv
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-09/">September, 2020</a></li>
<li><a href="/cgspace-notes/2020-08/">August, 2020</a></li> <li><a href="/cgspace-notes/2020-08/">August, 2020</a></li>
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li> <li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
@ -522,8 +524,6 @@ $ sed '/^id/d' 10568-*.csv | csvcut -c 1,2 &gt; map-to-cifor-archive.csv
<li><a href="/cgspace-notes/2020-05/">May, 2020</a></li> <li><a href="/cgspace-notes/2020-05/">May, 2020</a></li>
<li><a href="/cgspace-notes/2020-04/">April, 2020</a></li>
</ol> </ol>
</section> </section>

4
docs/2018-07/index.html
View File

@ -566,6 +566,8 @@ dspace=# select count(text_value) from metadatavalue where resource_type_id=2 an
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-09/">September, 2020</a></li>
<li><a href="/cgspace-notes/2020-08/">August, 2020</a></li> <li><a href="/cgspace-notes/2020-08/">August, 2020</a></li>
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li> <li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
@ -574,8 +576,6 @@ dspace=# select count(text_value) from metadatavalue where resource_type_id=2 an
<li><a href="/cgspace-notes/2020-05/">May, 2020</a></li> <li><a href="/cgspace-notes/2020-05/">May, 2020</a></li>
<li><a href="/cgspace-notes/2020-04/">April, 2020</a></li>
</ol> </ol>
</section> </section>

4
docs/2018-08/index.html
View File

@ -439,6 +439,8 @@ $ dspace database migrate ignored
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-09/">September, 2020</a></li>
<li><a href="/cgspace-notes/2020-08/">August, 2020</a></li> <li><a href="/cgspace-notes/2020-08/">August, 2020</a></li>
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li> <li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
@ -447,8 +449,6 @@ $ dspace database migrate ignored
<li><a href="/cgspace-notes/2020-05/">May, 2020</a></li> <li><a href="/cgspace-notes/2020-05/">May, 2020</a></li>
<li><a href="/cgspace-notes/2020-04/">April, 2020</a></li>
</ol> </ol>
</section> </section>

4
docs/2018-09/index.html
View File

@ -745,6 +745,8 @@ UPDATE metadatavalue SET text_value='ja' WHERE resource_type_id=2 AND metadata_f
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-09/">September, 2020</a></li>
<li><a href="/cgspace-notes/2020-08/">August, 2020</a></li> <li><a href="/cgspace-notes/2020-08/">August, 2020</a></li>
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li> <li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
@ -753,8 +755,6 @@ UPDATE metadatavalue SET text_value='ja' WHERE resource_type_id=2 AND metadata_f
<li><a href="/cgspace-notes/2020-05/">May, 2020</a></li> <li><a href="/cgspace-notes/2020-05/">May, 2020</a></li>
<li><a href="/cgspace-notes/2020-04/">April, 2020</a></li>
</ol> </ol>
</section> </section>

4
docs/2018-10/index.html
View File

@ -653,6 +653,8 @@ $ curl -X GET -H &quot;Content-Type: application/json&quot; -H &quot;Accept: app
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-09/">September, 2020</a></li>
<li><a href="/cgspace-notes/2020-08/">August, 2020</a></li> <li><a href="/cgspace-notes/2020-08/">August, 2020</a></li>
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li> <li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
@ -661,8 +663,6 @@ $ curl -X GET -H &quot;Content-Type: application/json&quot; -H &quot;Accept: app
<li><a href="/cgspace-notes/2020-05/">May, 2020</a></li> <li><a href="/cgspace-notes/2020-05/">May, 2020</a></li>
<li><a href="/cgspace-notes/2020-04/">April, 2020</a></li>
</ol> </ol>
</section> </section>

4
docs/2018-11/index.html
View File

@ -550,6 +550,8 @@ $ dspace dsrun org.dspace.eperson.Groomer -a -b 11/27/2016 -d
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-09/">September, 2020</a></li>
<li><a href="/cgspace-notes/2020-08/">August, 2020</a></li> <li><a href="/cgspace-notes/2020-08/">August, 2020</a></li>
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li> <li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
@ -558,8 +560,6 @@ $ dspace dsrun org.dspace.eperson.Groomer -a -b 11/27/2016 -d
<li><a href="/cgspace-notes/2020-05/">May, 2020</a></li> <li><a href="/cgspace-notes/2020-05/">May, 2020</a></li>
<li><a href="/cgspace-notes/2020-04/">April, 2020</a></li>
</ol> </ol>
</section> </section>

4
docs/2018-12/index.html
View File

@ -591,6 +591,8 @@ UPDATE 1
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-09/">September, 2020</a></li>
<li><a href="/cgspace-notes/2020-08/">August, 2020</a></li> <li><a href="/cgspace-notes/2020-08/">August, 2020</a></li>
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li> <li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
@ -599,8 +601,6 @@ UPDATE 1
<li><a href="/cgspace-notes/2020-05/">May, 2020</a></li> <li><a href="/cgspace-notes/2020-05/">May, 2020</a></li>
<li><a href="/cgspace-notes/2020-04/">April, 2020</a></li>
</ol> </ol>
</section> </section>

4
docs/2019-01/index.html
View File

@ -1261,6 +1261,8 @@ identify: CorruptImageProfile `xmp' @ warning/profile.c/SetImageProfileInternal/
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-09/">September, 2020</a></li>
<li><a href="/cgspace-notes/2020-08/">August, 2020</a></li> <li><a href="/cgspace-notes/2020-08/">August, 2020</a></li>
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li> <li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
@ -1269,8 +1271,6 @@ identify: CorruptImageProfile `xmp' @ warning/profile.c/SetImageProfileInternal/
<li><a href="/cgspace-notes/2020-05/">May, 2020</a></li> <li><a href="/cgspace-notes/2020-05/">May, 2020</a></li>
<li><a href="/cgspace-notes/2020-04/">April, 2020</a></li>
</ol> </ol>
</section> </section>

4
docs/2019-02/index.html
View File

@ -1341,6 +1341,8 @@ Please see the DSpace documentation for assistance.
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-09/">September, 2020</a></li>
<li><a href="/cgspace-notes/2020-08/">August, 2020</a></li> <li><a href="/cgspace-notes/2020-08/">August, 2020</a></li>
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li> <li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
@ -1349,8 +1351,6 @@ Please see the DSpace documentation for assistance.
<li><a href="/cgspace-notes/2020-05/">May, 2020</a></li> <li><a href="/cgspace-notes/2020-05/">May, 2020</a></li>
<li><a href="/cgspace-notes/2020-04/">April, 2020</a></li>
</ol> </ol>
</section> </section>

4
docs/2019-03/index.html
View File

@ -1205,6 +1205,8 @@ sys 0m2.551s
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-09/">September, 2020</a></li>
<li><a href="/cgspace-notes/2020-08/">August, 2020</a></li> <li><a href="/cgspace-notes/2020-08/">August, 2020</a></li>
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li> <li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
@ -1213,8 +1215,6 @@ sys 0m2.551s
<li><a href="/cgspace-notes/2020-05/">May, 2020</a></li> <li><a href="/cgspace-notes/2020-05/">May, 2020</a></li>
<li><a href="/cgspace-notes/2020-04/">April, 2020</a></li>
</ol> </ol>
</section> </section>

4
docs/2019-04/index.html
View File

@ -1296,6 +1296,8 @@ UPDATE 14
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-09/">September, 2020</a></li>
<li><a href="/cgspace-notes/2020-08/">August, 2020</a></li> <li><a href="/cgspace-notes/2020-08/">August, 2020</a></li>
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li> <li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
@ -1304,8 +1306,6 @@ UPDATE 14
<li><a href="/cgspace-notes/2020-05/">May, 2020</a></li> <li><a href="/cgspace-notes/2020-05/">May, 2020</a></li>
<li><a href="/cgspace-notes/2020-04/">April, 2020</a></li>
</ol> </ol>
</section> </section>

4
docs/2019-05/index.html
View File

@ -628,6 +628,8 @@ COPY 64871
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-09/">September, 2020</a></li>
<li><a href="/cgspace-notes/2020-08/">August, 2020</a></li> <li><a href="/cgspace-notes/2020-08/">August, 2020</a></li>
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li> <li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
@ -636,8 +638,6 @@ COPY 64871
<li><a href="/cgspace-notes/2020-05/">May, 2020</a></li> <li><a href="/cgspace-notes/2020-05/">May, 2020</a></li>
<li><a href="/cgspace-notes/2020-04/">April, 2020</a></li>
</ol> </ol>
</section> </section>

4
docs/2019-06/index.html
View File

@ -314,6 +314,8 @@ UPDATE 2
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-09/">September, 2020</a></li>
<li><a href="/cgspace-notes/2020-08/">August, 2020</a></li> <li><a href="/cgspace-notes/2020-08/">August, 2020</a></li>
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li> <li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
@ -322,8 +324,6 @@ UPDATE 2
<li><a href="/cgspace-notes/2020-05/">May, 2020</a></li> <li><a href="/cgspace-notes/2020-05/">May, 2020</a></li>
<li><a href="/cgspace-notes/2020-04/">April, 2020</a></li>
</ol> </ol>
</section> </section>

4
docs/2019-07/index.html
View File

@ -551,6 +551,8 @@ issn.validate('1020-3362')
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-09/">September, 2020</a></li>
<li><a href="/cgspace-notes/2020-08/">August, 2020</a></li> <li><a href="/cgspace-notes/2020-08/">August, 2020</a></li>
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li> <li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
@ -559,8 +561,6 @@ issn.validate('1020-3362')
<li><a href="/cgspace-notes/2020-05/">May, 2020</a></li> <li><a href="/cgspace-notes/2020-05/">May, 2020</a></li>
<li><a href="/cgspace-notes/2020-04/">April, 2020</a></li>
</ol> </ol>
</section> </section>

4
docs/2019-08/index.html
View File

@ -570,6 +570,8 @@ sys 2m27.496s
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-09/">September, 2020</a></li>
<li><a href="/cgspace-notes/2020-08/">August, 2020</a></li> <li><a href="/cgspace-notes/2020-08/">August, 2020</a></li>
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li> <li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
@ -578,8 +580,6 @@ sys 2m27.496s
<li><a href="/cgspace-notes/2020-05/">May, 2020</a></li> <li><a href="/cgspace-notes/2020-05/">May, 2020</a></li>
<li><a href="/cgspace-notes/2020-04/">April, 2020</a></li>
</ol> </ol>
</section> </section>

4
docs/2019-09/index.html
View File

@ -578,6 +578,8 @@ $ csv-metadata-quality -i /tmp/clarisa-institutions.csv -o /tmp/clarisa-institut
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-09/">September, 2020</a></li>
<li><a href="/cgspace-notes/2020-08/">August, 2020</a></li> <li><a href="/cgspace-notes/2020-08/">August, 2020</a></li>
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li> <li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
@ -586,8 +588,6 @@ $ csv-metadata-quality -i /tmp/clarisa-institutions.csv -o /tmp/clarisa-institut
<li><a href="/cgspace-notes/2020-05/">May, 2020</a></li> <li><a href="/cgspace-notes/2020-05/">May, 2020</a></li>
<li><a href="/cgspace-notes/2020-04/">April, 2020</a></li>
</ol> </ol>
</section> </section>

4
docs/2019-10/index.html
View File

@ -382,6 +382,8 @@ $ dspace import -a -c 10568/104057 -e fuu@cgiar.org -m 2019-10-15-Bioversity.map
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-09/">September, 2020</a></li>
<li><a href="/cgspace-notes/2020-08/">August, 2020</a></li> <li><a href="/cgspace-notes/2020-08/">August, 2020</a></li>
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li> <li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
@ -390,8 +392,6 @@ $ dspace import -a -c 10568/104057 -e fuu@cgiar.org -m 2019-10-15-Bioversity.map
<li><a href="/cgspace-notes/2020-05/">May, 2020</a></li> <li><a href="/cgspace-notes/2020-05/">May, 2020</a></li>
<li><a href="/cgspace-notes/2020-04/">April, 2020</a></li>
</ol> </ol>
</section> </section>

4
docs/2019-11/index.html
View File

@ -689,6 +689,8 @@ $ tidy -xml -utf8 -iq -m -w 0 dspace/config/controlled-vocabularies/cg-creator-i
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-09/">September, 2020</a></li>
<li><a href="/cgspace-notes/2020-08/">August, 2020</a></li> <li><a href="/cgspace-notes/2020-08/">August, 2020</a></li>
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li> <li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
@ -697,8 +699,6 @@ $ tidy -xml -utf8 -iq -m -w 0 dspace/config/controlled-vocabularies/cg-creator-i
<li><a href="/cgspace-notes/2020-05/">May, 2020</a></li> <li><a href="/cgspace-notes/2020-05/">May, 2020</a></li>
<li><a href="/cgspace-notes/2020-04/">April, 2020</a></li>
</ol> </ol>
</section> </section>

4
docs/2019-12/index.html
View File

@ -401,6 +401,8 @@ UPDATE 1
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-09/">September, 2020</a></li>
<li><a href="/cgspace-notes/2020-08/">August, 2020</a></li> <li><a href="/cgspace-notes/2020-08/">August, 2020</a></li>
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li> <li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
@ -409,8 +411,6 @@ UPDATE 1
<li><a href="/cgspace-notes/2020-05/">May, 2020</a></li> <li><a href="/cgspace-notes/2020-05/">May, 2020</a></li>
<li><a href="/cgspace-notes/2020-04/">April, 2020</a></li>
</ol> </ol>
</section> </section>

4
docs/2020-01/index.html
View File

@ -601,6 +601,8 @@ COPY 2900
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-09/">September, 2020</a></li>
<li><a href="/cgspace-notes/2020-08/">August, 2020</a></li> <li><a href="/cgspace-notes/2020-08/">August, 2020</a></li>
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li> <li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
@ -609,8 +611,6 @@ COPY 2900
<li><a href="/cgspace-notes/2020-05/">May, 2020</a></li> <li><a href="/cgspace-notes/2020-05/">May, 2020</a></li>
<li><a href="/cgspace-notes/2020-04/">April, 2020</a></li>
</ol> </ol>
</section> </section>

4
docs/2020-02/index.html
View File

@ -1272,6 +1272,8 @@ Moving: 21993 into core statistics-2019
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-09/">September, 2020</a></li>
<li><a href="/cgspace-notes/2020-08/">August, 2020</a></li> <li><a href="/cgspace-notes/2020-08/">August, 2020</a></li>
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li> <li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
@ -1280,8 +1282,6 @@ Moving: 21993 into core statistics-2019
<li><a href="/cgspace-notes/2020-05/">May, 2020</a></li> <li><a href="/cgspace-notes/2020-05/">May, 2020</a></li>
<li><a href="/cgspace-notes/2020-04/">April, 2020</a></li>
</ol> </ol>
</section> </section>

4
docs/2020-03/index.html
View File

@ -481,6 +481,8 @@ $ tidy -xml -utf8 -iq -m -w 0 dspace/config/controlled-vocabularies/cg-creator-i
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-09/">September, 2020</a></li>
<li><a href="/cgspace-notes/2020-08/">August, 2020</a></li> <li><a href="/cgspace-notes/2020-08/">August, 2020</a></li>
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li> <li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
@ -489,8 +491,6 @@ $ tidy -xml -utf8 -iq -m -w 0 dspace/config/controlled-vocabularies/cg-creator-i
<li><a href="/cgspace-notes/2020-05/">May, 2020</a></li> <li><a href="/cgspace-notes/2020-05/">May, 2020</a></li>
<li><a href="/cgspace-notes/2020-04/">April, 2020</a></li>
</ol> </ol>
</section> </section>

4
docs/2020-04/index.html
View File

@ -655,6 +655,8 @@ $ psql -c 'select * from pg_stat_activity' | wc -l
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-09/">September, 2020</a></li>
<li><a href="/cgspace-notes/2020-08/">August, 2020</a></li> <li><a href="/cgspace-notes/2020-08/">August, 2020</a></li>
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li> <li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
@ -663,8 +665,6 @@ $ psql -c 'select * from pg_stat_activity' | wc -l
<li><a href="/cgspace-notes/2020-05/">May, 2020</a></li> <li><a href="/cgspace-notes/2020-05/">May, 2020</a></li>
<li><a href="/cgspace-notes/2020-04/">April, 2020</a></li>
</ol> </ol>
</section> </section>

4
docs/2020-05/index.html
View File

@ -474,6 +474,8 @@ Caused by: java.lang.NullPointerException
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-09/">September, 2020</a></li>
<li><a href="/cgspace-notes/2020-08/">August, 2020</a></li> <li><a href="/cgspace-notes/2020-08/">August, 2020</a></li>
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li> <li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
@ -482,8 +484,6 @@ Caused by: java.lang.NullPointerException
<li><a href="/cgspace-notes/2020-05/">May, 2020</a></li> <li><a href="/cgspace-notes/2020-05/">May, 2020</a></li>
<li><a href="/cgspace-notes/2020-04/">April, 2020</a></li>
</ol> </ol>
</section> </section>

4
docs/2020-06/index.html
View File

@ -808,6 +808,8 @@ $ csvcut -c 'id,cg.subject.ilri[],cg.subject.ilri[en_US],dc.subject[en_US]' /tmp
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-09/">September, 2020</a></li>
<li><a href="/cgspace-notes/2020-08/">August, 2020</a></li> <li><a href="/cgspace-notes/2020-08/">August, 2020</a></li>
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li> <li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
@ -816,8 +818,6 @@ $ csvcut -c 'id,cg.subject.ilri[],cg.subject.ilri[en_US],dc.subject[en_US]' /tmp
<li><a href="/cgspace-notes/2020-05/">May, 2020</a></li> <li><a href="/cgspace-notes/2020-05/">May, 2020</a></li>
<li><a href="/cgspace-notes/2020-04/">April, 2020</a></li>
</ol> </ol>
</section> </section>

4
docs/2020-07/index.html
View File

@ -1139,6 +1139,8 @@ Fixed 4 occurences of: Muloi, D.M.
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-09/">September, 2020</a></li>
<li><a href="/cgspace-notes/2020-08/">August, 2020</a></li> <li><a href="/cgspace-notes/2020-08/">August, 2020</a></li>
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li> <li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
@ -1147,8 +1149,6 @@ Fixed 4 occurences of: Muloi, D.M.
<li><a href="/cgspace-notes/2020-05/">May, 2020</a></li> <li><a href="/cgspace-notes/2020-05/">May, 2020</a></li>
<li><a href="/cgspace-notes/2020-04/">April, 2020</a></li>
</ol> </ol>
</section> </section>

8
docs/2020-08/index.html
View File

@ -19,7 +19,7 @@ It is class based so I can easily add support for other vocabularies, and the te
<meta property="og:type" content="article" /> <meta property="og:type" content="article" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/2020-08/" /> <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/2020-08/" />
<meta property="article:published_time" content="2020-08-02T15:35:54+03:00" /> <meta property="article:published_time" content="2020-08-02T15:35:54+03:00" />
<meta property="article:modified_time" content="2020-08-22T13:29:08+03:00" /> <meta property="article:modified_time" content="2020-09-02T13:39:11+03:00" />
<meta name="twitter:card" content="summary"/> <meta name="twitter:card" content="summary"/>
<meta name="twitter:title" content="August, 2020"/> <meta name="twitter:title" content="August, 2020"/>
@ -45,7 +45,7 @@ It is class based so I can easily add support for other vocabularies, and the te
"url": "https://alanorth.github.io/cgspace-notes/2020-08/", "url": "https://alanorth.github.io/cgspace-notes/2020-08/",
"wordCount": "3672", "wordCount": "3672",
"datePublished": "2020-08-02T15:35:54+03:00", "datePublished": "2020-08-02T15:35:54+03:00",
"dateModified": "2020-08-22T13:29:08+03:00", "dateModified": "2020-09-02T13:39:11+03:00",
"author": { "author": {
"@type": "Person", "@type": "Person",
"name": "Alan Orth" "name": "Alan Orth"
@ -795,6 +795,8 @@ $ grep -c added /tmp/2020-08-27-countrycodetagger.log
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-09/">September, 2020</a></li>
<li><a href="/cgspace-notes/2020-08/">August, 2020</a></li> <li><a href="/cgspace-notes/2020-08/">August, 2020</a></li>
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li> <li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
@ -803,8 +805,6 @@ $ grep -c added /tmp/2020-08-27-countrycodetagger.log
<li><a href="/cgspace-notes/2020-05/">May, 2020</a></li> <li><a href="/cgspace-notes/2020-05/">May, 2020</a></li>
<li><a href="/cgspace-notes/2020-04/">April, 2020</a></li>
</ol> </ol>
</section> </section>

320
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@ -0,0 +1,320 @@
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Replace Marissa van Epp for Rhys Bucknall in the CCAFS groups on CGSpace because Marissa no longer works at CCAFS
The AReS Explorer hasn&rsquo;t updated its index since 2020-08-22 when I last forced it
I restarted it again now and told Moayad that the automatic indexing isn&rsquo;t working
Add Alliance of Bioversity International and CIAT to affiliations on CGSpace
Abenet told me that the general search text on AReS doesn&rsquo;t get reset when you use the &ldquo;Reset Filters&rdquo; button
I filed a bug on OpenRXV: https://github.com/ilri/OpenRXV/issues/39
I filed an issue on OpenRXV to make some minor edits to the admin UI: https://github.com/ilri/OpenRXV/issues/40
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Replace Marissa van Epp for Rhys Bucknall in the CCAFS groups on CGSpace because Marissa no longer works at CCAFS
The AReS Explorer hasn&rsquo;t updated its index since 2020-08-22 when I last forced it
I restarted it again now and told Moayad that the automatic indexing isn&rsquo;t working
Add Alliance of Bioversity International and CIAT to affiliations on CGSpace
Abenet told me that the general search text on AReS doesn&rsquo;t get reset when you use the &ldquo;Reset Filters&rdquo; button
I filed a bug on OpenRXV: https://github.com/ilri/OpenRXV/issues/39
I filed an issue on OpenRXV to make some minor edits to the admin UI: https://github.com/ilri/OpenRXV/issues/40
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<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2020-09/">September, 2020</a></h2>
<p class="blog-post-meta"><time datetime="2020-09-02T15:35:54+03:00">Wed Sep 02, 2020</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
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<h2 id="2020-09-02">2020-09-02</h2>
<ul>
<li>Replace Marissa van Epp for Rhys Bucknall in the CCAFS groups on CGSpace because Marissa no longer works at CCAFS</li>
<li>The AReS Explorer hasn&rsquo;t updated its index since 2020-08-22 when I last forced it
<ul>
<li>I restarted it again now and told Moayad that the automatic indexing isn&rsquo;t working</li>
</ul>
</li>
<li>Add <code>Alliance of Bioversity International and CIAT</code> to affiliations on CGSpace</li>
<li>Abenet told me that the general search text on AReS doesn&rsquo;t get reset when you use the &ldquo;Reset Filters&rdquo; button
<ul>
<li>I filed a bug on OpenRXV: <a href="https://github.com/ilri/OpenRXV/issues/39">https://github.com/ilri/OpenRXV/issues/39</a></li>
</ul>
</li>
<li>I filed an issue on OpenRXV to make some minor edits to the admin UI: <a href="https://github.com/ilri/OpenRXV/issues/40">https://github.com/ilri/OpenRXV/issues/40</a></li>
</ul>
<ul>
<li>I ran the country code tagger on CGSpace:</li>
</ul>
<pre><code>$ time chrt -b 0 dspace curate -t countrycodetagger -i all -r - -l 500 -s object | tee /tmp/2020-09-02-countrycodetagger.log
...
real 2m10.516s
user 1m43.953s
sys 0m15.192s
$ grep -c added /tmp/2020-09-02-countrycodetagger.log
39
</code></pre><ul>
<li>I still need to create a cron job for this&hellip;</li>
<li>Sisay and Abenet said they can&rsquo;t log in with LDAP on DSpace Test (DSpace 6)
<ul>
<li>I tried and I can&rsquo;t either&hellip; but it is working on CGSpace</li>
<li>The error on DSpace 6 is:</li>
</ul>
</li>
</ul>
<pre><code>2020-09-02 12:03:10,666 INFO org.dspace.authenticate.LDAPAuthentication @ anonymous:session_id=A629116488DCC467E1EA2062A2E2EFD7:ip_addr=92.220.02.201:failed_login:no DN found for user aorth
</code></pre><ul>
<li>I tried to query LDAP directly using the application credentials with ldapsearch and it works:</li>
</ul>
<pre><code>$ ldapsearch -x -H ldaps://AZCGNEROOT2.CGIARAD.ORG:636/ -b &quot;dc=cgiarad,dc=org&quot; -D &quot;applicationaccount@cgiarad.org&quot; -W &quot;(sAMAccountName=me)&quot;
</code></pre><ul>
<li>According to the <a href="https://wiki.lyrasis.org/display/DSDOC6x/Authentication+Plugins#AuthenticationPlugins-LDAPAuthentication">DSpace 6 docs</a> we need to escape commas in our LDAP parameters due to the new configuration system
<ul>
<li>I added the commas and restarted DSpace (though technically we shouldn&rsquo;t need to restart due to the new config system hot reloading configs)</li>
<li>Run all system updates on DSpace Test (linode26) and reboot it</li>
<li>After the restart LDAP login works&hellip;</li>
</ul>
</li>
</ul>
<h2 id="2020-09-03">2020-09-03</h2>
<ul>
<li>Fix some erroneous &ldquo;review status&rdquo; fields that Abenet noticed on AReS
<ul>
<li>I used my <code>fix-metadata-values.py</code> and <code>delete-metadata-values.py</code> scripts with the following input files:</li>
</ul>
</li>
</ul>
<pre><code>$ cat 2020-09-03-fix-review-status.csv
dc.description.version,correct
Externally Peer Reviewed,Peer Review
Peer Reviewed,Peer Review
Peer review,Peer Review
Peer reviewed,Peer Review
Peer-Reviewed,Peer Review
Peer-reviewed,Peer Review
peer Review,Peer Review
$ cat 2020-09-03-delete-review-status.csv
dc.description.version
Report
Formally Published
Poster
Unrefereed reprint
$ ./delete-metadata-values.py -i 2020-09-03-delete-review-status.csv -db dspace -u dspace -p 'fuuu' -f dc.description.version -m 68
$ ./fix-metadata-values.py -i 2020-09-03-fix-review-status.csv -db dspace -u dspace -p 'fuuu' -f dc.description.version -t 'correct' -m 68
</code></pre><ul>
<li>Start reviewing 95 items for IITA (20201stbatch)
<ul>
<li>I used my <a href="https://github.com/ilri/csv-metadata-quality">csv-metadata-quality</a> tool to check and fix some low-hanging fruit first</li>
<li>This fixed a few unnecessary Unicode, excessive whitespace, invalid multi-value separator, and duplicate metadata values</li>
<li>Then I looked at the data in OpenRefine and noticed some things:
<ul>
<li>All issue dates use year only, but some have months in the citation so they could be more specific</li>
<li>I normalized all the DOIs to use &ldquo;<a href="https://doi.org">https://doi.org</a>&rdquo; format</li>
<li>I fixed a few AGROVOC subjects with a simple GREL: <code>value.replace(&quot;GRAINS&quot;,&quot;GRAIN&quot;).replace(&quot;SOILS&quot;,&quot;SOIL&quot;).replace(&quot;CORN&quot;,&quot;MAIZE&quot;)</code></li>
<li>But there are a few more that are invalid that she will have to look at</li>
<li>I uploaded the items to <a href="https://dspacetest.cgiar.org/handle/10568/108357">DSpace Test</a> and it was apparently successful but I get these errors to the console:</li>
</ul>
</li>
</ul>
</li>
</ul>
<pre><code>Thu Sep 03 12:26:33 CEST 2020 | Query:containerItem:ea7a2648-180d-4fce-bdc5-c3aa2304fc58
Error while updating
java.lang.NullPointerException
at com.atmire.dspace.cua.CUASolrLoggerServiceImpl$5.visit(SourceFile:1131)
at com.atmire.dspace.cua.CUASolrLoggerServiceImpl.visitEachStatisticShard(SourceFile:212)
at com.atmire.dspace.cua.CUASolrLoggerServiceImpl.update(SourceFile:1104)
at com.atmire.dspace.cua.CUASolrLoggerServiceImpl.update(SourceFile:1093)
at org.dspace.statistics.StatisticsLoggingConsumer.consume(SourceFile:104)
at org.dspace.event.BasicDispatcher.consume(BasicDispatcher.java:177)
at org.dspace.event.BasicDispatcher.dispatch(BasicDispatcher.java:123)
at org.dspace.core.Context.dispatchEvents(Context.java:455)
at org.dspace.core.Context.commit(Context.java:424)
at org.dspace.core.Context.complete(Context.java:380)
at org.dspace.app.bulkedit.MetadataImport.main(MetadataImport.java:1399)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.dspace.app.launcher.ScriptLauncher.runOneCommand(ScriptLauncher.java:229)
at org.dspace.app.launcher.ScriptLauncher.main(ScriptLauncher.java:81)
</code></pre><ul>
<li>There are more in the DSpace log so I will raise it with Atmire immediately</li>
</ul>
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@ -94,6 +94,8 @@
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-09/">September, 2020</a></li>
<li><a href="/cgspace-notes/2020-08/">August, 2020</a></li> <li><a href="/cgspace-notes/2020-08/">August, 2020</a></li>
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li> <li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
@ -102,8 +104,6 @@
<li><a href="/cgspace-notes/2020-05/">May, 2020</a></li> <li><a href="/cgspace-notes/2020-05/">May, 2020</a></li>
<li><a href="/cgspace-notes/2020-04/">April, 2020</a></li>
</ol> </ol>
</section> </section>

8
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@ -9,7 +9,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." /> <meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" /> <meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/" /> <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/" />
<meta property="og:updated_time" content="2020-08-22T13:29:08+03:00" /> <meta property="og:updated_time" content="2020-09-02T13:39:11+03:00" />
<meta name="twitter:card" content="summary"/> <meta name="twitter:card" content="summary"/>
<meta name="twitter:title" content="Categories"/> <meta name="twitter:title" content="Categories"/>
@ -83,7 +83,7 @@
<article class="blog-post"> <article class="blog-post">
<header> <header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/categories/notes/">Notes</a></h2> <h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/categories/notes/">Notes</a></h2>
<p class="blog-post-meta"><time datetime="2020-08-02T15:35:54+03:00">Sun Aug 02, 2020</time> by Alan Orth</p> <p class="blog-post-meta"><time datetime="2020-09-02T15:35:54+03:00">Wed Sep 02, 2020</time> by Alan Orth</p>
</header> </header>
<a href='https://alanorth.github.io/cgspace-notes/categories/notes/'>Read more →</a> <a href='https://alanorth.github.io/cgspace-notes/categories/notes/'>Read more →</a>
@ -107,6 +107,8 @@
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-09/">September, 2020</a></li>
<li><a href="/cgspace-notes/2020-08/">August, 2020</a></li> <li><a href="/cgspace-notes/2020-08/">August, 2020</a></li>
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li> <li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
@ -115,8 +117,6 @@
<li><a href="/cgspace-notes/2020-05/">May, 2020</a></li> <li><a href="/cgspace-notes/2020-05/">May, 2020</a></li>
<li><a href="/cgspace-notes/2020-04/">April, 2020</a></li>
</ol> </ol>
</section> </section>

4
docs/categories/index.xml
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@ -6,7 +6,7 @@
<description>Recent content in Categories on CGSpace Notes</description> <description>Recent content in Categories on CGSpace Notes</description>
<generator>Hugo -- gohugo.io</generator> <generator>Hugo -- gohugo.io</generator>
<language>en-us</language> <language>en-us</language>
<lastBuildDate>Sun, 02 Aug 2020 15:35:54 +0300</lastBuildDate> <lastBuildDate>Wed, 02 Sep 2020 15:35:54 +0300</lastBuildDate>
<atom:link href="https://alanorth.github.io/cgspace-notes/categories/index.xml" rel="self" type="application/rss+xml" /> <atom:link href="https://alanorth.github.io/cgspace-notes/categories/index.xml" rel="self" type="application/rss+xml" />
@ -14,7 +14,7 @@
<item> <item>
<title>Notes</title> <title>Notes</title>
<link>https://alanorth.github.io/cgspace-notes/categories/notes/</link> <link>https://alanorth.github.io/cgspace-notes/categories/notes/</link>
<pubDate>Sun, 02 Aug 2020 15:35:54 +0300</pubDate> <pubDate>Wed, 02 Sep 2020 15:35:54 +0300</pubDate>
<guid>https://alanorth.github.io/cgspace-notes/categories/notes/</guid> <guid>https://alanorth.github.io/cgspace-notes/categories/notes/</guid>
<description></description> <description></description>

77
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@ -9,7 +9,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." /> <meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" /> <meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/notes/" /> <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/notes/" />
<meta property="og:updated_time" content="2020-08-22T13:29:08+03:00" /> <meta property="og:updated_time" content="2020-09-02T13:39:11+03:00" />
<meta name="twitter:card" content="summary"/> <meta name="twitter:card" content="summary"/>
<meta name="twitter:title" content="Notes"/> <meta name="twitter:title" content="Notes"/>
@ -80,6 +80,39 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2020-09/">September, 2020</a></h2>
<p class="blog-post-meta"><time datetime="2020-09-02T15:35:54+03:00">Wed Sep 02, 2020</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2020-09-02">2020-09-02</h2>
<ul>
<li>Replace Marissa van Epp for Rhys Bucknall in the CCAFS groups on CGSpace because Marissa no longer works at CCAFS</li>
<li>The AReS Explorer hasn&rsquo;t updated its index since 2020-08-22 when I last forced it
<ul>
<li>I restarted it again now and told Moayad that the automatic indexing isn&rsquo;t working</li>
</ul>
</li>
<li>Add <code>Alliance of Bioversity International and CIAT</code> to affiliations on CGSpace</li>
<li>Abenet told me that the general search text on AReS doesn&rsquo;t get reset when you use the &ldquo;Reset Filters&rdquo; button
<ul>
<li>I filed a bug on OpenRXV: <a href="https://github.com/ilri/OpenRXV/issues/39">https://github.com/ilri/OpenRXV/issues/39</a></li>
</ul>
</li>
<li>I filed an issue on OpenRXV to make some minor edits to the admin UI: <a href="https://github.com/ilri/OpenRXV/issues/40">https://github.com/ilri/OpenRXV/issues/40</a></li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2020-09/'>Read more →</a>
</article>
<article class="blog-post"> <article class="blog-post">
<header> <header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2020-08/">August, 2020</a></h2> <h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2020-08/">August, 2020</a></h2>
@ -347,44 +380,6 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2019-11/">November, 2019</a></h2>
<p class="blog-post-meta"><time datetime="2019-11-04T12:20:30+02:00">Mon Nov 04, 2019</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2019-11-04">2019-11-04</h2>
<ul>
<li>Peter noticed that there were 5.2 million hits on CGSpace in 2019-10 according to the Atmire usage statistics
<ul>
<li>I looked in the nginx logs and see 4.6 million in the access logs, and 1.2 million in the API logs:</li>
</ul>
</li>
</ul>
<pre><code># zcat --force /var/log/nginx/*access.log.*.gz | grep -cE &quot;[0-9]{1,2}/Oct/2019&quot;
4671942
# zcat --force /var/log/nginx/{rest,oai,statistics}.log.*.gz | grep -cE &quot;[0-9]{1,2}/Oct/2019&quot;
1277694
</code></pre><ul>
<li>So 4.6 million from XMLUI and another 1.2 million from API requests</li>
<li>Let&rsquo;s see how many of the REST API requests were for bitstreams (because they are counted in Solr stats):</li>
</ul>
<pre><code># zcat --force /var/log/nginx/rest.log.*.gz | grep -c -E &quot;[0-9]{1,2}/Oct/2019&quot;
1183456
# zcat --force /var/log/nginx/rest.log.*.gz | grep -E &quot;[0-9]{1,2}/Oct/2019&quot; | grep -c -E &quot;/rest/bitstreams&quot;
106781
</code></pre>
<a href='https://alanorth.github.io/cgspace-notes/2019-11/'>Read more →</a>
</article>
<nav class="blog-pagination"> <nav class="blog-pagination">
@ -409,6 +404,8 @@
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-09/">September, 2020</a></li>
<li><a href="/cgspace-notes/2020-08/">August, 2020</a></li> <li><a href="/cgspace-notes/2020-08/">August, 2020</a></li>
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li> <li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
@ -417,8 +414,6 @@
<li><a href="/cgspace-notes/2020-05/">May, 2020</a></li> <li><a href="/cgspace-notes/2020-05/">May, 2020</a></li>
<li><a href="/cgspace-notes/2020-04/">April, 2020</a></li>
</ol> </ol>
</section> </section>

26
docs/categories/notes/index.xml
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@ -6,11 +6,35 @@
<description>Recent content in Notes on CGSpace Notes</description> <description>Recent content in Notes on CGSpace Notes</description>
<generator>Hugo -- gohugo.io</generator> <generator>Hugo -- gohugo.io</generator>
<language>en-us</language> <language>en-us</language>
<lastBuildDate>Sun, 02 Aug 2020 15:35:54 +0300</lastBuildDate> <lastBuildDate>Wed, 02 Sep 2020 15:35:54 +0300</lastBuildDate>
<atom:link href="https://alanorth.github.io/cgspace-notes/categories/notes/index.xml" rel="self" type="application/rss+xml" /> <atom:link href="https://alanorth.github.io/cgspace-notes/categories/notes/index.xml" rel="self" type="application/rss+xml" />
<item>
<title>September, 2020</title>
<link>https://alanorth.github.io/cgspace-notes/2020-09/</link>
<pubDate>Wed, 02 Sep 2020 15:35:54 +0300</pubDate>
<guid>https://alanorth.github.io/cgspace-notes/2020-09/</guid>
<description>&lt;h2 id=&#34;2020-09-02&#34;&gt;2020-09-02&lt;/h2&gt;
&lt;ul&gt;
&lt;li&gt;Replace Marissa van Epp for Rhys Bucknall in the CCAFS groups on CGSpace because Marissa no longer works at CCAFS&lt;/li&gt;
&lt;li&gt;The AReS Explorer hasn&amp;rsquo;t updated its index since 2020-08-22 when I last forced it
&lt;ul&gt;
&lt;li&gt;I restarted it again now and told Moayad that the automatic indexing isn&amp;rsquo;t working&lt;/li&gt;
&lt;/ul&gt;
&lt;/li&gt;
&lt;li&gt;Add &lt;code&gt;Alliance of Bioversity International and CIAT&lt;/code&gt; to affiliations on CGSpace&lt;/li&gt;
&lt;li&gt;Abenet told me that the general search text on AReS doesn&amp;rsquo;t get reset when you use the &amp;ldquo;Reset Filters&amp;rdquo; button
&lt;ul&gt;
&lt;li&gt;I filed a bug on OpenRXV: &lt;a href=&#34;https://github.com/ilri/OpenRXV/issues/39&#34;&gt;https://github.com/ilri/OpenRXV/issues/39&lt;/a&gt;&lt;/li&gt;
&lt;/ul&gt;
&lt;/li&gt;
&lt;li&gt;I filed an issue on OpenRXV to make some minor edits to the admin UI: &lt;a href=&#34;https://github.com/ilri/OpenRXV/issues/40&#34;&gt;https://github.com/ilri/OpenRXV/issues/40&lt;/a&gt;&lt;/li&gt;
&lt;/ul&gt;</description>
</item>
<item> <item>
<title>August, 2020</title> <title>August, 2020</title>
<link>https://alanorth.github.io/cgspace-notes/2020-08/</link> <link>https://alanorth.github.io/cgspace-notes/2020-08/</link>

89
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@ -9,7 +9,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." /> <meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" /> <meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/notes/" /> <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/notes/" />
<meta property="og:updated_time" content="2020-08-22T13:29:08+03:00" /> <meta property="og:updated_time" content="2020-09-02T13:39:11+03:00" />
<meta name="twitter:card" content="summary"/> <meta name="twitter:card" content="summary"/>
<meta name="twitter:title" content="Notes"/> <meta name="twitter:title" content="Notes"/>
@ -80,6 +80,44 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2019-11/">November, 2019</a></h2>
<p class="blog-post-meta"><time datetime="2019-11-04T12:20:30+02:00">Mon Nov 04, 2019</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2019-11-04">2019-11-04</h2>
<ul>
<li>Peter noticed that there were 5.2 million hits on CGSpace in 2019-10 according to the Atmire usage statistics
<ul>
<li>I looked in the nginx logs and see 4.6 million in the access logs, and 1.2 million in the API logs:</li>
</ul>
</li>
</ul>
<pre><code># zcat --force /var/log/nginx/*access.log.*.gz | grep -cE &quot;[0-9]{1,2}/Oct/2019&quot;
4671942
# zcat --force /var/log/nginx/{rest,oai,statistics}.log.*.gz | grep -cE &quot;[0-9]{1,2}/Oct/2019&quot;
1277694
</code></pre><ul>
<li>So 4.6 million from XMLUI and another 1.2 million from API requests</li>
<li>Let&rsquo;s see how many of the REST API requests were for bitstreams (because they are counted in Solr stats):</li>
</ul>
<pre><code># zcat --force /var/log/nginx/rest.log.*.gz | grep -c -E &quot;[0-9]{1,2}/Oct/2019&quot;
1183456
# zcat --force /var/log/nginx/rest.log.*.gz | grep -E &quot;[0-9]{1,2}/Oct/2019&quot; | grep -c -E &quot;/rest/bitstreams&quot;
106781
</code></pre>
<a href='https://alanorth.github.io/cgspace-notes/2019-11/'>Read more →</a>
</article>
<article class="blog-post"> <article class="blog-post">
<header> <header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></h2> <h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></h2>
@ -355,51 +393,6 @@ $ ./delete-metadata-values.py -i /tmp/2019-02-21-delete-1-region.csv -db dspace
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2019-02/">February, 2019</a></h2>
<p class="blog-post-meta"><time datetime="2019-02-01T21:37:30+02:00">Fri Feb 01, 2019</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2019-02-01">2019-02-01</h2>
<ul>
<li>Linode has alerted a few times since last night that the CPU usage on CGSpace (linode18) was high despite me increasing the alert threshold last week from 250% to 275%—I might need to increase it again!</li>
<li>The top IPs before, during, and after this latest alert tonight were:</li>
</ul>
<pre><code># zcat --force /var/log/nginx/*.log /var/log/nginx/*.log.1 | grep -E &quot;01/Feb/2019:(17|18|19|20|21)&quot; | awk '{print $1}' | sort | uniq -c | sort -n | tail -n 10
245 207.46.13.5
332 54.70.40.11
385 5.143.231.38
405 207.46.13.173
405 207.46.13.75
1117 66.249.66.219
1121 35.237.175.180
1546 5.9.6.51
2474 45.5.186.2
5490 85.25.237.71
</code></pre><ul>
<li><code>85.25.237.71</code> is the &ldquo;Linguee Bot&rdquo; that I first saw last month</li>
<li>The Solr statistics the past few months have been very high and I was wondering if the web server logs also showed an increase</li>
<li>There were just over 3 million accesses in the nginx logs last month:</li>
</ul>
<pre><code># time zcat --force /var/log/nginx/* | grep -cE &quot;[0-9]{1,2}/Jan/2019&quot;
3018243
real 0m19.873s
user 0m22.203s
sys 0m1.979s
</code></pre>
<a href='https://alanorth.github.io/cgspace-notes/2019-02/'>Read more →</a>
</article>
<nav class="blog-pagination"> <nav class="blog-pagination">
<a class="btn btn-outline-primary" href="/cgspace-notes/categories/notes/" rel="prev" role="button">Previous page</a> <a class="btn btn-outline-primary" href="/cgspace-notes/categories/notes/" rel="prev" role="button">Previous page</a>
@ -424,6 +417,8 @@ sys 0m1.979s
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-09/">September, 2020</a></li>
<li><a href="/cgspace-notes/2020-08/">August, 2020</a></li> <li><a href="/cgspace-notes/2020-08/">August, 2020</a></li>
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li> <li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
@ -432,8 +427,6 @@ sys 0m1.979s
<li><a href="/cgspace-notes/2020-05/">May, 2020</a></li> <li><a href="/cgspace-notes/2020-05/">May, 2020</a></li>
<li><a href="/cgspace-notes/2020-04/">April, 2020</a></li>
</ol> </ol>
</section> </section>

73
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View File

@ -9,7 +9,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." /> <meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" /> <meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/notes/" /> <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/notes/" />
<meta property="og:updated_time" content="2020-08-22T13:29:08+03:00" /> <meta property="og:updated_time" content="2020-09-02T13:39:11+03:00" />
<meta name="twitter:card" content="summary"/> <meta name="twitter:card" content="summary"/>
<meta name="twitter:title" content="Notes"/> <meta name="twitter:title" content="Notes"/>
@ -80,6 +80,51 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2019-02/">February, 2019</a></h2>
<p class="blog-post-meta"><time datetime="2019-02-01T21:37:30+02:00">Fri Feb 01, 2019</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2019-02-01">2019-02-01</h2>
<ul>
<li>Linode has alerted a few times since last night that the CPU usage on CGSpace (linode18) was high despite me increasing the alert threshold last week from 250% to 275%—I might need to increase it again!</li>
<li>The top IPs before, during, and after this latest alert tonight were:</li>
</ul>
<pre><code># zcat --force /var/log/nginx/*.log /var/log/nginx/*.log.1 | grep -E &quot;01/Feb/2019:(17|18|19|20|21)&quot; | awk '{print $1}' | sort | uniq -c | sort -n | tail -n 10
245 207.46.13.5
332 54.70.40.11
385 5.143.231.38
405 207.46.13.173
405 207.46.13.75
1117 66.249.66.219
1121 35.237.175.180
1546 5.9.6.51
2474 45.5.186.2
5490 85.25.237.71
</code></pre><ul>
<li><code>85.25.237.71</code> is the &ldquo;Linguee Bot&rdquo; that I first saw last month</li>
<li>The Solr statistics the past few months have been very high and I was wondering if the web server logs also showed an increase</li>
<li>There were just over 3 million accesses in the nginx logs last month:</li>
</ul>
<pre><code># time zcat --force /var/log/nginx/* | grep -cE &quot;[0-9]{1,2}/Jan/2019&quot;
3018243
real 0m19.873s
user 0m22.203s
sys 0m1.979s
</code></pre>
<a href='https://alanorth.github.io/cgspace-notes/2019-02/'>Read more →</a>
</article>
<article class="blog-post"> <article class="blog-post">
<header> <header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2019-01/">January, 2019</a></h2> <h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2019-01/">January, 2019</a></h2>
@ -338,28 +383,6 @@ sys 2m7.289s
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2018-04/">April, 2018</a></h2>
<p class="blog-post-meta"><time datetime="2018-04-01T16:13:54+02:00">Sun Apr 01, 2018</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2018-04-01">2018-04-01</h2>
<ul>
<li>I tried to test something on DSpace Test but noticed that it&rsquo;s down since god knows when</li>
<li>Catalina logs at least show some memory errors yesterday:</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2018-04/'>Read more →</a>
</article>
<nav class="blog-pagination"> <nav class="blog-pagination">
<a class="btn btn-outline-primary" href="/cgspace-notes/categories/notes/page/2/" rel="prev" role="button">Previous page</a> <a class="btn btn-outline-primary" href="/cgspace-notes/categories/notes/page/2/" rel="prev" role="button">Previous page</a>
@ -384,6 +407,8 @@ sys 2m7.289s
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-09/">September, 2020</a></li>
<li><a href="/cgspace-notes/2020-08/">August, 2020</a></li> <li><a href="/cgspace-notes/2020-08/">August, 2020</a></li>
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li> <li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
@ -392,8 +417,6 @@ sys 2m7.289s
<li><a href="/cgspace-notes/2020-05/">May, 2020</a></li> <li><a href="/cgspace-notes/2020-05/">May, 2020</a></li>
<li><a href="/cgspace-notes/2020-04/">April, 2020</a></li>
</ol> </ol>
</section> </section>

28
docs/categories/notes/page/4/index.html
View File

@ -9,7 +9,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." /> <meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" /> <meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/notes/" /> <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/notes/" />
<meta property="og:updated_time" content="2020-08-22T13:29:08+03:00" /> <meta property="og:updated_time" content="2020-09-02T13:39:11+03:00" />
<meta name="twitter:card" content="summary"/> <meta name="twitter:card" content="summary"/>
<meta name="twitter:title" content="Notes"/> <meta name="twitter:title" content="Notes"/>
@ -80,6 +80,28 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2018-04/">April, 2018</a></h2>
<p class="blog-post-meta"><time datetime="2018-04-01T16:13:54+02:00">Sun Apr 01, 2018</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2018-04-01">2018-04-01</h2>
<ul>
<li>I tried to test something on DSpace Test but noticed that it&rsquo;s down since god knows when</li>
<li>Catalina logs at least show some memory errors yesterday:</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2018-04/'>Read more →</a>
</article>
<article class="blog-post"> <article class="blog-post">
<header> <header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2018-03/">March, 2018</a></h2> <h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2018-03/">March, 2018</a></h2>
@ -335,6 +357,8 @@ COPY 54701
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-09/">September, 2020</a></li>
<li><a href="/cgspace-notes/2020-08/">August, 2020</a></li> <li><a href="/cgspace-notes/2020-08/">August, 2020</a></li>
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li> <li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
@ -343,8 +367,6 @@ COPY 54701
<li><a href="/cgspace-notes/2020-05/">May, 2020</a></li> <li><a href="/cgspace-notes/2020-05/">May, 2020</a></li>
<li><a href="/cgspace-notes/2020-04/">April, 2020</a></li>
</ol> </ol>
</section> </section>

4
docs/cgiar-library-migration/index.html
View File

@ -279,6 +279,8 @@ dspace=# select setval('handle_seq',86873);
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-09/">September, 2020</a></li>
<li><a href="/cgspace-notes/2020-08/">August, 2020</a></li> <li><a href="/cgspace-notes/2020-08/">August, 2020</a></li>
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li> <li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
@ -287,8 +289,6 @@ dspace=# select setval('handle_seq',86873);
<li><a href="/cgspace-notes/2020-05/">May, 2020</a></li> <li><a href="/cgspace-notes/2020-05/">May, 2020</a></li>
<li><a href="/cgspace-notes/2020-04/">April, 2020</a></li>
</ol> </ol>
</section> </section>

4
docs/cgspace-cgcorev2-migration/index.html
View File

@ -451,6 +451,8 @@
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-09/">September, 2020</a></li>
<li><a href="/cgspace-notes/2020-08/">August, 2020</a></li> <li><a href="/cgspace-notes/2020-08/">August, 2020</a></li>
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li> <li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
@ -459,8 +461,6 @@
<li><a href="/cgspace-notes/2020-05/">May, 2020</a></li> <li><a href="/cgspace-notes/2020-05/">May, 2020</a></li>
<li><a href="/cgspace-notes/2020-04/">April, 2020</a></li>
</ol> </ol>
</section> </section>

79
docs/index.html
View File

@ -9,7 +9,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." /> <meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" /> <meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" /> <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />
<meta property="og:updated_time" content="2020-08-22T13:29:08+03:00" /> <meta property="og:updated_time" content="2020-09-02T13:39:11+03:00" />
<meta name="twitter:card" content="summary"/> <meta name="twitter:card" content="summary"/>
<meta name="twitter:title" content="CGSpace Notes"/> <meta name="twitter:title" content="CGSpace Notes"/>
@ -28,7 +28,7 @@
"@type": "Person", "@type": "Person",
"name": "Alan Orth" "name": "Alan Orth"
}, },
"dateModified": "2020-08-02T15:35:54+03:00", "dateModified": "2020-09-02T15:35:54+03:00",
"keywords": "notes,""migration,""notes,", "keywords": "notes,""migration,""notes,",
"description":"Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." "description":"Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
} }
@ -95,6 +95,39 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2020-09/">September, 2020</a></h2>
<p class="blog-post-meta"><time datetime="2020-09-02T15:35:54+03:00">Wed Sep 02, 2020</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2020-09-02">2020-09-02</h2>
<ul>
<li>Replace Marissa van Epp for Rhys Bucknall in the CCAFS groups on CGSpace because Marissa no longer works at CCAFS</li>
<li>The AReS Explorer hasn&rsquo;t updated its index since 2020-08-22 when I last forced it
<ul>
<li>I restarted it again now and told Moayad that the automatic indexing isn&rsquo;t working</li>
</ul>
</li>
<li>Add <code>Alliance of Bioversity International and CIAT</code> to affiliations on CGSpace</li>
<li>Abenet told me that the general search text on AReS doesn&rsquo;t get reset when you use the &ldquo;Reset Filters&rdquo; button
<ul>
<li>I filed a bug on OpenRXV: <a href="https://github.com/ilri/OpenRXV/issues/39">https://github.com/ilri/OpenRXV/issues/39</a></li>
</ul>
</li>
<li>I filed an issue on OpenRXV to make some minor edits to the admin UI: <a href="https://github.com/ilri/OpenRXV/issues/40">https://github.com/ilri/OpenRXV/issues/40</a></li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2020-09/'>Read more →</a>
</article>
<article class="blog-post"> <article class="blog-post">
<header> <header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2020-08/">August, 2020</a></h2> <h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2020-08/">August, 2020</a></h2>
@ -362,44 +395,6 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2019-11/">November, 2019</a></h2>
<p class="blog-post-meta"><time datetime="2019-11-04T12:20:30+02:00">Mon Nov 04, 2019</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2019-11-04">2019-11-04</h2>
<ul>
<li>Peter noticed that there were 5.2 million hits on CGSpace in 2019-10 according to the Atmire usage statistics
<ul>
<li>I looked in the nginx logs and see 4.6 million in the access logs, and 1.2 million in the API logs:</li>
</ul>
</li>
</ul>
<pre><code># zcat --force /var/log/nginx/*access.log.*.gz | grep -cE &quot;[0-9]{1,2}/Oct/2019&quot;
4671942
# zcat --force /var/log/nginx/{rest,oai,statistics}.log.*.gz | grep -cE &quot;[0-9]{1,2}/Oct/2019&quot;
1277694
</code></pre><ul>
<li>So 4.6 million from XMLUI and another 1.2 million from API requests</li>
<li>Let&rsquo;s see how many of the REST API requests were for bitstreams (because they are counted in Solr stats):</li>
</ul>
<pre><code># zcat --force /var/log/nginx/rest.log.*.gz | grep -c -E &quot;[0-9]{1,2}/Oct/2019&quot;
1183456
# zcat --force /var/log/nginx/rest.log.*.gz | grep -E &quot;[0-9]{1,2}/Oct/2019&quot; | grep -c -E &quot;/rest/bitstreams&quot;
106781
</code></pre>
<a href='https://alanorth.github.io/cgspace-notes/2019-11/'>Read more →</a>
</article>
<nav class="blog-pagination"> <nav class="blog-pagination">
@ -424,6 +419,8 @@
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-09/">September, 2020</a></li>
<li><a href="/cgspace-notes/2020-08/">August, 2020</a></li> <li><a href="/cgspace-notes/2020-08/">August, 2020</a></li>
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li> <li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
@ -432,8 +429,6 @@
<li><a href="/cgspace-notes/2020-05/">May, 2020</a></li> <li><a href="/cgspace-notes/2020-05/">May, 2020</a></li>
<li><a href="/cgspace-notes/2020-04/">April, 2020</a></li>
</ol> </ol>
</section> </section>

26
docs/index.xml
View File

@ -6,11 +6,35 @@
<description>Recent content on CGSpace Notes</description> <description>Recent content on CGSpace Notes</description>
<generator>Hugo -- gohugo.io</generator> <generator>Hugo -- gohugo.io</generator>
<language>en-us</language> <language>en-us</language>
<lastBuildDate>Sun, 02 Aug 2020 15:35:54 +0300</lastBuildDate> <lastBuildDate>Wed, 02 Sep 2020 15:35:54 +0300</lastBuildDate>
<atom:link href="https://alanorth.github.io/cgspace-notes/index.xml" rel="self" type="application/rss+xml" /> <atom:link href="https://alanorth.github.io/cgspace-notes/index.xml" rel="self" type="application/rss+xml" />
<item>
<title>September, 2020</title>
<link>https://alanorth.github.io/cgspace-notes/2020-09/</link>
<pubDate>Wed, 02 Sep 2020 15:35:54 +0300</pubDate>
<guid>https://alanorth.github.io/cgspace-notes/2020-09/</guid>
<description>&lt;h2 id=&#34;2020-09-02&#34;&gt;2020-09-02&lt;/h2&gt;
&lt;ul&gt;
&lt;li&gt;Replace Marissa van Epp for Rhys Bucknall in the CCAFS groups on CGSpace because Marissa no longer works at CCAFS&lt;/li&gt;
&lt;li&gt;The AReS Explorer hasn&amp;rsquo;t updated its index since 2020-08-22 when I last forced it
&lt;ul&gt;
&lt;li&gt;I restarted it again now and told Moayad that the automatic indexing isn&amp;rsquo;t working&lt;/li&gt;
&lt;/ul&gt;
&lt;/li&gt;
&lt;li&gt;Add &lt;code&gt;Alliance of Bioversity International and CIAT&lt;/code&gt; to affiliations on CGSpace&lt;/li&gt;
&lt;li&gt;Abenet told me that the general search text on AReS doesn&amp;rsquo;t get reset when you use the &amp;ldquo;Reset Filters&amp;rdquo; button
&lt;ul&gt;
&lt;li&gt;I filed a bug on OpenRXV: &lt;a href=&#34;https://github.com/ilri/OpenRXV/issues/39&#34;&gt;https://github.com/ilri/OpenRXV/issues/39&lt;/a&gt;&lt;/li&gt;
&lt;/ul&gt;
&lt;/li&gt;
&lt;li&gt;I filed an issue on OpenRXV to make some minor edits to the admin UI: &lt;a href=&#34;https://github.com/ilri/OpenRXV/issues/40&#34;&gt;https://github.com/ilri/OpenRXV/issues/40&lt;/a&gt;&lt;/li&gt;
&lt;/ul&gt;</description>
</item>
<item> <item>
<title>August, 2020</title> <title>August, 2020</title>
<link>https://alanorth.github.io/cgspace-notes/2020-08/</link> <link>https://alanorth.github.io/cgspace-notes/2020-08/</link>

91
docs/page/2/index.html
View File

@ -9,7 +9,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." /> <meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" /> <meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" /> <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />
<meta property="og:updated_time" content="2020-08-22T13:29:08+03:00" /> <meta property="og:updated_time" content="2020-09-02T13:39:11+03:00" />
<meta name="twitter:card" content="summary"/> <meta name="twitter:card" content="summary"/>
<meta name="twitter:title" content="CGSpace Notes"/> <meta name="twitter:title" content="CGSpace Notes"/>
@ -28,7 +28,7 @@
"@type": "Person", "@type": "Person",
"name": "Alan Orth" "name": "Alan Orth"
}, },
"dateModified": "2020-08-02T15:35:54+03:00", "dateModified": "2020-09-02T15:35:54+03:00",
"keywords": "notes,""migration,""notes,", "keywords": "notes,""migration,""notes,",
"description":"Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." "description":"Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
} }
@ -95,6 +95,44 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2019-11/">November, 2019</a></h2>
<p class="blog-post-meta"><time datetime="2019-11-04T12:20:30+02:00">Mon Nov 04, 2019</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2019-11-04">2019-11-04</h2>
<ul>
<li>Peter noticed that there were 5.2 million hits on CGSpace in 2019-10 according to the Atmire usage statistics
<ul>
<li>I looked in the nginx logs and see 4.6 million in the access logs, and 1.2 million in the API logs:</li>
</ul>
</li>
</ul>
<pre><code># zcat --force /var/log/nginx/*access.log.*.gz | grep -cE &quot;[0-9]{1,2}/Oct/2019&quot;
4671942
# zcat --force /var/log/nginx/{rest,oai,statistics}.log.*.gz | grep -cE &quot;[0-9]{1,2}/Oct/2019&quot;
1277694
</code></pre><ul>
<li>So 4.6 million from XMLUI and another 1.2 million from API requests</li>
<li>Let&rsquo;s see how many of the REST API requests were for bitstreams (because they are counted in Solr stats):</li>
</ul>
<pre><code># zcat --force /var/log/nginx/rest.log.*.gz | grep -c -E &quot;[0-9]{1,2}/Oct/2019&quot;
1183456
# zcat --force /var/log/nginx/rest.log.*.gz | grep -E &quot;[0-9]{1,2}/Oct/2019&quot; | grep -c -E &quot;/rest/bitstreams&quot;
106781
</code></pre>
<a href='https://alanorth.github.io/cgspace-notes/2019-11/'>Read more →</a>
</article>
<article class="blog-post"> <article class="blog-post">
<header> <header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></h2> <h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></h2>
@ -370,51 +408,6 @@ $ ./delete-metadata-values.py -i /tmp/2019-02-21-delete-1-region.csv -db dspace
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2019-02/">February, 2019</a></h2>
<p class="blog-post-meta"><time datetime="2019-02-01T21:37:30+02:00">Fri Feb 01, 2019</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2019-02-01">2019-02-01</h2>
<ul>
<li>Linode has alerted a few times since last night that the CPU usage on CGSpace (linode18) was high despite me increasing the alert threshold last week from 250% to 275%—I might need to increase it again!</li>
<li>The top IPs before, during, and after this latest alert tonight were:</li>
</ul>
<pre><code># zcat --force /var/log/nginx/*.log /var/log/nginx/*.log.1 | grep -E &quot;01/Feb/2019:(17|18|19|20|21)&quot; | awk '{print $1}' | sort | uniq -c | sort -n | tail -n 10
245 207.46.13.5
332 54.70.40.11
385 5.143.231.38
405 207.46.13.173
405 207.46.13.75
1117 66.249.66.219
1121 35.237.175.180
1546 5.9.6.51
2474 45.5.186.2
5490 85.25.237.71
</code></pre><ul>
<li><code>85.25.237.71</code> is the &ldquo;Linguee Bot&rdquo; that I first saw last month</li>
<li>The Solr statistics the past few months have been very high and I was wondering if the web server logs also showed an increase</li>
<li>There were just over 3 million accesses in the nginx logs last month:</li>
</ul>
<pre><code># time zcat --force /var/log/nginx/* | grep -cE &quot;[0-9]{1,2}/Jan/2019&quot;
3018243
real 0m19.873s
user 0m22.203s
sys 0m1.979s
</code></pre>
<a href='https://alanorth.github.io/cgspace-notes/2019-02/'>Read more →</a>
</article>
<nav class="blog-pagination"> <nav class="blog-pagination">
<a class="btn btn-outline-primary" href="/cgspace-notes/" rel="prev" role="button">Previous page</a> <a class="btn btn-outline-primary" href="/cgspace-notes/" rel="prev" role="button">Previous page</a>
@ -439,6 +432,8 @@ sys 0m1.979s
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-09/">September, 2020</a></li>
<li><a href="/cgspace-notes/2020-08/">August, 2020</a></li> <li><a href="/cgspace-notes/2020-08/">August, 2020</a></li>
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li> <li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
@ -447,8 +442,6 @@ sys 0m1.979s
<li><a href="/cgspace-notes/2020-05/">May, 2020</a></li> <li><a href="/cgspace-notes/2020-05/">May, 2020</a></li>
<li><a href="/cgspace-notes/2020-04/">April, 2020</a></li>
</ol> </ol>
</section> </section>

75
docs/page/3/index.html
View File

@ -9,7 +9,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." /> <meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" /> <meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" /> <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />
<meta property="og:updated_time" content="2020-08-22T13:29:08+03:00" /> <meta property="og:updated_time" content="2020-09-02T13:39:11+03:00" />
<meta name="twitter:card" content="summary"/> <meta name="twitter:card" content="summary"/>
<meta name="twitter:title" content="CGSpace Notes"/> <meta name="twitter:title" content="CGSpace Notes"/>
@ -28,7 +28,7 @@
"@type": "Person", "@type": "Person",
"name": "Alan Orth" "name": "Alan Orth"
}, },
"dateModified": "2020-08-02T15:35:54+03:00", "dateModified": "2020-09-02T15:35:54+03:00",
"keywords": "notes,""migration,""notes,", "keywords": "notes,""migration,""notes,",
"description":"Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." "description":"Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
} }
@ -95,6 +95,51 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2019-02/">February, 2019</a></h2>
<p class="blog-post-meta"><time datetime="2019-02-01T21:37:30+02:00">Fri Feb 01, 2019</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2019-02-01">2019-02-01</h2>
<ul>
<li>Linode has alerted a few times since last night that the CPU usage on CGSpace (linode18) was high despite me increasing the alert threshold last week from 250% to 275%—I might need to increase it again!</li>
<li>The top IPs before, during, and after this latest alert tonight were:</li>
</ul>
<pre><code># zcat --force /var/log/nginx/*.log /var/log/nginx/*.log.1 | grep -E &quot;01/Feb/2019:(17|18|19|20|21)&quot; | awk '{print $1}' | sort | uniq -c | sort -n | tail -n 10
245 207.46.13.5
332 54.70.40.11
385 5.143.231.38
405 207.46.13.173
405 207.46.13.75
1117 66.249.66.219
1121 35.237.175.180
1546 5.9.6.51
2474 45.5.186.2
5490 85.25.237.71
</code></pre><ul>
<li><code>85.25.237.71</code> is the &ldquo;Linguee Bot&rdquo; that I first saw last month</li>
<li>The Solr statistics the past few months have been very high and I was wondering if the web server logs also showed an increase</li>
<li>There were just over 3 million accesses in the nginx logs last month:</li>
</ul>
<pre><code># time zcat --force /var/log/nginx/* | grep -cE &quot;[0-9]{1,2}/Jan/2019&quot;
3018243
real 0m19.873s
user 0m22.203s
sys 0m1.979s
</code></pre>
<a href='https://alanorth.github.io/cgspace-notes/2019-02/'>Read more →</a>
</article>
<article class="blog-post"> <article class="blog-post">
<header> <header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2019-01/">January, 2019</a></h2> <h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2019-01/">January, 2019</a></h2>
@ -353,28 +398,6 @@ sys 2m7.289s
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2018-04/">April, 2018</a></h2>
<p class="blog-post-meta"><time datetime="2018-04-01T16:13:54+02:00">Sun Apr 01, 2018</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2018-04-01">2018-04-01</h2>
<ul>
<li>I tried to test something on DSpace Test but noticed that it&rsquo;s down since god knows when</li>
<li>Catalina logs at least show some memory errors yesterday:</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2018-04/'>Read more →</a>
</article>
<nav class="blog-pagination"> <nav class="blog-pagination">
<a class="btn btn-outline-primary" href="/cgspace-notes/page/2/" rel="prev" role="button">Previous page</a> <a class="btn btn-outline-primary" href="/cgspace-notes/page/2/" rel="prev" role="button">Previous page</a>
@ -399,6 +422,8 @@ sys 2m7.289s
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-09/">September, 2020</a></li>
<li><a href="/cgspace-notes/2020-08/">August, 2020</a></li> <li><a href="/cgspace-notes/2020-08/">August, 2020</a></li>
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li> <li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
@ -407,8 +432,6 @@ sys 2m7.289s
<li><a href="/cgspace-notes/2020-05/">May, 2020</a></li> <li><a href="/cgspace-notes/2020-05/">May, 2020</a></li>
<li><a href="/cgspace-notes/2020-04/">April, 2020</a></li>
</ol> </ol>
</section> </section>

57
docs/page/4/index.html
View File

@ -9,7 +9,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." /> <meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" /> <meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" /> <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />
<meta property="og:updated_time" content="2020-08-22T13:29:08+03:00" /> <meta property="og:updated_time" content="2020-09-02T13:39:11+03:00" />
<meta name="twitter:card" content="summary"/> <meta name="twitter:card" content="summary"/>
<meta name="twitter:title" content="CGSpace Notes"/> <meta name="twitter:title" content="CGSpace Notes"/>
@ -28,7 +28,7 @@
"@type": "Person", "@type": "Person",
"name": "Alan Orth" "name": "Alan Orth"
}, },
"dateModified": "2020-08-02T15:35:54+03:00", "dateModified": "2020-09-02T15:35:54+03:00",
"keywords": "notes,""migration,""notes,", "keywords": "notes,""migration,""notes,",
"description":"Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." "description":"Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
} }
@ -95,6 +95,28 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2018-04/">April, 2018</a></h2>
<p class="blog-post-meta"><time datetime="2018-04-01T16:13:54+02:00">Sun Apr 01, 2018</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2018-04-01">2018-04-01</h2>
<ul>
<li>I tried to test something on DSpace Test but noticed that it&rsquo;s down since god knows when</li>
<li>Catalina logs at least show some memory errors yesterday:</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2018-04/'>Read more →</a>
</article>
<article class="blog-post"> <article class="blog-post">
<header> <header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2018-03/">March, 2018</a></h2> <h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2018-03/">March, 2018</a></h2>
@ -390,33 +412,6 @@ COPY 54701
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2017-07/">July, 2017</a></h2>
<p class="blog-post-meta"><time datetime="2017-07-01T18:03:52+03:00">Sat Jul 01, 2017</time> by Alan Orth in
<span class="fas fa-tag" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/tags/notes/" rel="tag">Notes</a>
</p>
</header>
<h2 id="2017-07-01">2017-07-01</h2>
<ul>
<li>Run system updates and reboot DSpace Test</li>
</ul>
<h2 id="2017-07-04">2017-07-04</h2>
<ul>
<li>Merge changes for WLE Phase II theme rename (<a href="https://github.com/ilri/DSpace/pull/329">#329</a>)</li>
<li>Looking at extracting the metadata registries from ICARDA&rsquo;s MEL DSpace database so we can compare fields with CGSpace</li>
<li>We can use PostgreSQL&rsquo;s extended output format (<code>-x</code>) plus <code>sed</code> to format the output into quasi XML:</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2017-07/'>Read more →</a>
</article>
<nav class="blog-pagination"> <nav class="blog-pagination">
<a class="btn btn-outline-primary" href="/cgspace-notes/page/3/" rel="prev" role="button">Previous page</a> <a class="btn btn-outline-primary" href="/cgspace-notes/page/3/" rel="prev" role="button">Previous page</a>
@ -441,6 +436,8 @@ COPY 54701
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-09/">September, 2020</a></li>
<li><a href="/cgspace-notes/2020-08/">August, 2020</a></li> <li><a href="/cgspace-notes/2020-08/">August, 2020</a></li>
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li> <li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
@ -449,8 +446,6 @@ COPY 54701
<li><a href="/cgspace-notes/2020-05/">May, 2020</a></li> <li><a href="/cgspace-notes/2020-05/">May, 2020</a></li>
<li><a href="/cgspace-notes/2020-04/">April, 2020</a></li>
</ol> </ol>
</section> </section>

61
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View File

@ -9,7 +9,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." /> <meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" /> <meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" /> <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />
<meta property="og:updated_time" content="2020-08-22T13:29:08+03:00" /> <meta property="og:updated_time" content="2020-09-02T13:39:11+03:00" />
<meta name="twitter:card" content="summary"/> <meta name="twitter:card" content="summary"/>
<meta name="twitter:title" content="CGSpace Notes"/> <meta name="twitter:title" content="CGSpace Notes"/>
@ -28,7 +28,7 @@
"@type": "Person", "@type": "Person",
"name": "Alan Orth" "name": "Alan Orth"
}, },
"dateModified": "2020-08-02T15:35:54+03:00", "dateModified": "2020-09-02T15:35:54+03:00",
"keywords": "notes,""migration,""notes,", "keywords": "notes,""migration,""notes,",
"description":"Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." "description":"Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
} }
@ -95,6 +95,33 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2017-07/">July, 2017</a></h2>
<p class="blog-post-meta"><time datetime="2017-07-01T18:03:52+03:00">Sat Jul 01, 2017</time> by Alan Orth in
<span class="fas fa-tag" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/tags/notes/" rel="tag">Notes</a>
</p>
</header>
<h2 id="2017-07-01">2017-07-01</h2>
<ul>
<li>Run system updates and reboot DSpace Test</li>
</ul>
<h2 id="2017-07-04">2017-07-04</h2>
<ul>
<li>Merge changes for WLE Phase II theme rename (<a href="https://github.com/ilri/DSpace/pull/329">#329</a>)</li>
<li>Looking at extracting the metadata registries from ICARDA&rsquo;s MEL DSpace database so we can compare fields with CGSpace</li>
<li>We can use PostgreSQL&rsquo;s extended output format (<code>-x</code>) plus <code>sed</code> to format the output into quasi XML:</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2017-07/'>Read more →</a>
</article>
<article class="blog-post"> <article class="blog-post">
<header> <header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2017-06/">June, 2017</a></h2> <h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2017-06/">June, 2017</a></h2>
@ -336,32 +363,6 @@ DELETE 1
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2016-09/">September, 2016</a></h2>
<p class="blog-post-meta"><time datetime="2016-09-01T15:53:00+03:00">Thu Sep 01, 2016</time> by Alan Orth in
<span class="fas fa-tag" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/tags/notes/" rel="tag">Notes</a>
</p>
</header>
<h2 id="2016-09-01">2016-09-01</h2>
<ul>
<li>Discuss helping CCAFS with some batch tagging of ORCID IDs for their authors</li>
<li>Discuss how the migration of CGIAR&rsquo;s Active Directory to a flat structure will break our LDAP groups in DSpace</li>
<li>We had been using <code>DC=ILRI</code> to determine whether a user was ILRI or not</li>
<li>It looks like we might be able to use OUs now, instead of DCs:</li>
</ul>
<pre><code>$ ldapsearch -x -H ldaps://svcgroot2.cgiarad.org:3269/ -b &quot;dc=cgiarad,dc=org&quot; -D &quot;admigration1@cgiarad.org&quot; -W &quot;(sAMAccountName=admigration1)&quot;
</code></pre>
<a href='https://alanorth.github.io/cgspace-notes/2016-09/'>Read more →</a>
</article>
<nav class="blog-pagination"> <nav class="blog-pagination">
<a class="btn btn-outline-primary" href="/cgspace-notes/page/4/" rel="prev" role="button">Previous page</a> <a class="btn btn-outline-primary" href="/cgspace-notes/page/4/" rel="prev" role="button">Previous page</a>
@ -386,6 +387,8 @@ DELETE 1
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-09/">September, 2020</a></li>
<li><a href="/cgspace-notes/2020-08/">August, 2020</a></li> <li><a href="/cgspace-notes/2020-08/">August, 2020</a></li>
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li> <li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
@ -394,8 +397,6 @@ DELETE 1
<li><a href="/cgspace-notes/2020-05/">May, 2020</a></li> <li><a href="/cgspace-notes/2020-05/">May, 2020</a></li>
<li><a href="/cgspace-notes/2020-04/">April, 2020</a></li>
</ol> </ol>
</section> </section>

64
docs/page/6/index.html
View File

@ -9,7 +9,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." /> <meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" /> <meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" /> <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />
<meta property="og:updated_time" content="2020-08-22T13:29:08+03:00" /> <meta property="og:updated_time" content="2020-09-02T13:39:11+03:00" />
<meta name="twitter:card" content="summary"/> <meta name="twitter:card" content="summary"/>
<meta name="twitter:title" content="CGSpace Notes"/> <meta name="twitter:title" content="CGSpace Notes"/>
@ -28,7 +28,7 @@
"@type": "Person", "@type": "Person",
"name": "Alan Orth" "name": "Alan Orth"
}, },
"dateModified": "2020-08-02T15:35:54+03:00", "dateModified": "2020-09-02T15:35:54+03:00",
"keywords": "notes,""migration,""notes,", "keywords": "notes,""migration,""notes,",
"description":"Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." "description":"Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
} }
@ -95,6 +95,32 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2016-09/">September, 2016</a></h2>
<p class="blog-post-meta"><time datetime="2016-09-01T15:53:00+03:00">Thu Sep 01, 2016</time> by Alan Orth in
<span class="fas fa-tag" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/tags/notes/" rel="tag">Notes</a>
</p>
</header>
<h2 id="2016-09-01">2016-09-01</h2>
<ul>
<li>Discuss helping CCAFS with some batch tagging of ORCID IDs for their authors</li>
<li>Discuss how the migration of CGIAR&rsquo;s Active Directory to a flat structure will break our LDAP groups in DSpace</li>
<li>We had been using <code>DC=ILRI</code> to determine whether a user was ILRI or not</li>
<li>It looks like we might be able to use OUs now, instead of DCs:</li>
</ul>
<pre><code>$ ldapsearch -x -H ldaps://svcgroot2.cgiarad.org:3269/ -b &quot;dc=cgiarad,dc=org&quot; -D &quot;admigration1@cgiarad.org&quot; -W &quot;(sAMAccountName=admigration1)&quot;
</code></pre>
<a href='https://alanorth.github.io/cgspace-notes/2016-09/'>Read more →</a>
</article>
<article class="blog-post"> <article class="blog-post">
<header> <header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2016-08/">August, 2016</a></h2> <h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2016-08/">August, 2016</a></h2>
@ -333,37 +359,11 @@ dspacetest=# select text_value from metadatavalue where metadata_field_id=3 and
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2015-11/">November, 2015</a></h2>
<p class="blog-post-meta"><time datetime="2015-11-23T17:00:57+03:00">Mon Nov 23, 2015</time> by Alan Orth in
<span class="fas fa-tag" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/tags/notes/" rel="tag">Notes</a>
</p>
</header>
<h2 id="2015-11-22">2015-11-22</h2>
<ul>
<li>CGSpace went down</li>
<li>Looks like DSpace exhausted its PostgreSQL connection pool</li>
<li>Last week I had increased the limit from 30 to 60, which seemed to help, but now there are many more idle connections:</li>
</ul>
<pre><code>$ psql -c 'SELECT * from pg_stat_activity;' | grep idle | grep -c cgspace
78
</code></pre>
<a href='https://alanorth.github.io/cgspace-notes/2015-11/'>Read more →</a>
</article>
<nav class="blog-pagination"> <nav class="blog-pagination">
<a class="btn btn-outline-primary" href="/cgspace-notes/page/5/" rel="prev" role="button">Previous page</a> <a class="btn btn-outline-primary" href="/cgspace-notes/page/5/" rel="prev" role="button">Previous page</a>
<a class="btn btn-outline-primary disabled" href="#" role="button" aria-disabled="true">Next page</a> <a class="btn btn-outline-primary" href="/cgspace-notes/page/7/" rel="next" role="button">Next page</a>
</nav> </nav>
@ -383,6 +383,8 @@ dspacetest=# select text_value from metadatavalue where metadata_field_id=3 and
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-09/">September, 2020</a></li>
<li><a href="/cgspace-notes/2020-08/">August, 2020</a></li> <li><a href="/cgspace-notes/2020-08/">August, 2020</a></li>
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li> <li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
@ -391,8 +393,6 @@ dspacetest=# select text_value from metadatavalue where metadata_field_id=3 and
<li><a href="/cgspace-notes/2020-05/">May, 2020</a></li> <li><a href="/cgspace-notes/2020-05/">May, 2020</a></li>
<li><a href="/cgspace-notes/2020-04/">April, 2020</a></li>
</ol> </ol>
</section> </section>

198
docs/page/7/index.html Normal file
View File

@ -0,0 +1,198 @@
<!DOCTYPE html>
<html lang="en" >
<head>
<meta charset="utf-8">
<meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no">
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<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
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<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />
<meta property="og:updated_time" content="2020-09-02T13:39:11+03:00" />
<meta name="twitter:card" content="summary"/>
<meta name="twitter:title" content="CGSpace Notes"/>
<meta name="twitter:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."/>
<meta name="generator" content="Hugo 0.74.3" />
<script type="application/ld+json">
{
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"url" : "https://alanorth.github.io/cgspace-notes/",
"author": {
"@type": "Person",
"name": "Alan Orth"
},
"dateModified": "2020-09-02T15:35:54+03:00",
"keywords": "notes,""migration,""notes,",
"description":"Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
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<body>
<div class="blog-masthead">
<div class="container">
<nav class="nav blog-nav">
<a class="nav-link active" href="https://alanorth.github.io/cgspace-notes/">Home</a>
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</div>
<header class="blog-header">
<div class="container">
<h1 class="blog-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/" rel="home">CGSpace Notes</a></h1>
<p class="lead blog-description" dir="auto">Documenting day-to-day work on the <a href="https://cgspace.cgiar.org">CGSpace</a> repository.</p>
</div>
</header>
<div class="container">
<div class="row">
<div class="col-sm-8 blog-main">
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2015-11/">November, 2015</a></h2>
<p class="blog-post-meta"><time datetime="2015-11-23T17:00:57+03:00">Mon Nov 23, 2015</time> by Alan Orth in
<span class="fas fa-tag" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/tags/notes/" rel="tag">Notes</a>
</p>
</header>
<h2 id="2015-11-22">2015-11-22</h2>
<ul>
<li>CGSpace went down</li>
<li>Looks like DSpace exhausted its PostgreSQL connection pool</li>
<li>Last week I had increased the limit from 30 to 60, which seemed to help, but now there are many more idle connections:</li>
</ul>
<pre><code>$ psql -c 'SELECT * from pg_stat_activity;' | grep idle | grep -c cgspace
78
</code></pre>
<a href='https://alanorth.github.io/cgspace-notes/2015-11/'>Read more →</a>
</article>
<nav class="blog-pagination">
<a class="btn btn-outline-primary" href="/cgspace-notes/page/6/" rel="prev" role="button">Previous page</a>
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</div> <!-- /.blog-main -->
<aside class="col-sm-3 ml-auto blog-sidebar">
<section class="sidebar-module">
<h4>Recent Posts</h4>
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-09/">September, 2020</a></li>
<li><a href="/cgspace-notes/2020-08/">August, 2020</a></li>
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
<li><a href="/cgspace-notes/2020-06/">June, 2020</a></li>
<li><a href="/cgspace-notes/2020-05/">May, 2020</a></li>
</ol>
</section>
<section class="sidebar-module">
<h4>Links</h4>
<ol class="list-unstyled">
<li><a href="https://cgspace.cgiar.org">CGSpace</a></li>
<li><a href="https://dspacetest.cgiar.org">DSpace Test</a></li>
<li><a href="https://github.com/ilri/DSpace">CGSpace @ GitHub</a></li>
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79
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@ -9,7 +9,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." /> <meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" /> <meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" /> <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" />
<meta property="og:updated_time" content="2020-08-22T13:29:08+03:00" /> <meta property="og:updated_time" content="2020-09-02T13:39:11+03:00" />
<meta name="twitter:card" content="summary"/> <meta name="twitter:card" content="summary"/>
<meta name="twitter:title" content="Posts"/> <meta name="twitter:title" content="Posts"/>
@ -28,7 +28,7 @@
"@type": "Person", "@type": "Person",
"name": "Alan Orth" "name": "Alan Orth"
}, },
"dateModified": "2020-08-02T15:35:54+03:00", "dateModified": "2020-09-02T15:35:54+03:00",
"keywords": "notes,""migration,""notes,", "keywords": "notes,""migration,""notes,",
"description":"Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." "description":"Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
} }
@ -95,6 +95,39 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2020-09/">September, 2020</a></h2>
<p class="blog-post-meta"><time datetime="2020-09-02T15:35:54+03:00">Wed Sep 02, 2020</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2020-09-02">2020-09-02</h2>
<ul>
<li>Replace Marissa van Epp for Rhys Bucknall in the CCAFS groups on CGSpace because Marissa no longer works at CCAFS</li>
<li>The AReS Explorer hasn&rsquo;t updated its index since 2020-08-22 when I last forced it
<ul>
<li>I restarted it again now and told Moayad that the automatic indexing isn&rsquo;t working</li>
</ul>
</li>
<li>Add <code>Alliance of Bioversity International and CIAT</code> to affiliations on CGSpace</li>
<li>Abenet told me that the general search text on AReS doesn&rsquo;t get reset when you use the &ldquo;Reset Filters&rdquo; button
<ul>
<li>I filed a bug on OpenRXV: <a href="https://github.com/ilri/OpenRXV/issues/39">https://github.com/ilri/OpenRXV/issues/39</a></li>
</ul>
</li>
<li>I filed an issue on OpenRXV to make some minor edits to the admin UI: <a href="https://github.com/ilri/OpenRXV/issues/40">https://github.com/ilri/OpenRXV/issues/40</a></li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2020-09/'>Read more →</a>
</article>
<article class="blog-post"> <article class="blog-post">
<header> <header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2020-08/">August, 2020</a></h2> <h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2020-08/">August, 2020</a></h2>
@ -362,44 +395,6 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2019-11/">November, 2019</a></h2>
<p class="blog-post-meta"><time datetime="2019-11-04T12:20:30+02:00">Mon Nov 04, 2019</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2019-11-04">2019-11-04</h2>
<ul>
<li>Peter noticed that there were 5.2 million hits on CGSpace in 2019-10 according to the Atmire usage statistics
<ul>
<li>I looked in the nginx logs and see 4.6 million in the access logs, and 1.2 million in the API logs:</li>
</ul>
</li>
</ul>
<pre><code># zcat --force /var/log/nginx/*access.log.*.gz | grep -cE &quot;[0-9]{1,2}/Oct/2019&quot;
4671942
# zcat --force /var/log/nginx/{rest,oai,statistics}.log.*.gz | grep -cE &quot;[0-9]{1,2}/Oct/2019&quot;
1277694
</code></pre><ul>
<li>So 4.6 million from XMLUI and another 1.2 million from API requests</li>
<li>Let&rsquo;s see how many of the REST API requests were for bitstreams (because they are counted in Solr stats):</li>
</ul>
<pre><code># zcat --force /var/log/nginx/rest.log.*.gz | grep -c -E &quot;[0-9]{1,2}/Oct/2019&quot;
1183456
# zcat --force /var/log/nginx/rest.log.*.gz | grep -E &quot;[0-9]{1,2}/Oct/2019&quot; | grep -c -E &quot;/rest/bitstreams&quot;
106781
</code></pre>
<a href='https://alanorth.github.io/cgspace-notes/2019-11/'>Read more →</a>
</article>
<nav class="blog-pagination"> <nav class="blog-pagination">
@ -424,6 +419,8 @@
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-09/">September, 2020</a></li>
<li><a href="/cgspace-notes/2020-08/">August, 2020</a></li> <li><a href="/cgspace-notes/2020-08/">August, 2020</a></li>
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li> <li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
@ -432,8 +429,6 @@
<li><a href="/cgspace-notes/2020-05/">May, 2020</a></li> <li><a href="/cgspace-notes/2020-05/">May, 2020</a></li>
<li><a href="/cgspace-notes/2020-04/">April, 2020</a></li>
</ol> </ol>
</section> </section>

26
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@ -6,11 +6,35 @@
<description>Recent content in Posts on CGSpace Notes</description> <description>Recent content in Posts on CGSpace Notes</description>
<generator>Hugo -- gohugo.io</generator> <generator>Hugo -- gohugo.io</generator>
<language>en-us</language> <language>en-us</language>
<lastBuildDate>Sun, 02 Aug 2020 15:35:54 +0300</lastBuildDate> <lastBuildDate>Wed, 02 Sep 2020 15:35:54 +0300</lastBuildDate>
<atom:link href="https://alanorth.github.io/cgspace-notes/posts/index.xml" rel="self" type="application/rss+xml" /> <atom:link href="https://alanorth.github.io/cgspace-notes/posts/index.xml" rel="self" type="application/rss+xml" />
<item>
<title>September, 2020</title>
<link>https://alanorth.github.io/cgspace-notes/2020-09/</link>
<pubDate>Wed, 02 Sep 2020 15:35:54 +0300</pubDate>
<guid>https://alanorth.github.io/cgspace-notes/2020-09/</guid>
<description>&lt;h2 id=&#34;2020-09-02&#34;&gt;2020-09-02&lt;/h2&gt;
&lt;ul&gt;
&lt;li&gt;Replace Marissa van Epp for Rhys Bucknall in the CCAFS groups on CGSpace because Marissa no longer works at CCAFS&lt;/li&gt;
&lt;li&gt;The AReS Explorer hasn&amp;rsquo;t updated its index since 2020-08-22 when I last forced it
&lt;ul&gt;
&lt;li&gt;I restarted it again now and told Moayad that the automatic indexing isn&amp;rsquo;t working&lt;/li&gt;
&lt;/ul&gt;
&lt;/li&gt;
&lt;li&gt;Add &lt;code&gt;Alliance of Bioversity International and CIAT&lt;/code&gt; to affiliations on CGSpace&lt;/li&gt;
&lt;li&gt;Abenet told me that the general search text on AReS doesn&amp;rsquo;t get reset when you use the &amp;ldquo;Reset Filters&amp;rdquo; button
&lt;ul&gt;
&lt;li&gt;I filed a bug on OpenRXV: &lt;a href=&#34;https://github.com/ilri/OpenRXV/issues/39&#34;&gt;https://github.com/ilri/OpenRXV/issues/39&lt;/a&gt;&lt;/li&gt;
&lt;/ul&gt;
&lt;/li&gt;
&lt;li&gt;I filed an issue on OpenRXV to make some minor edits to the admin UI: &lt;a href=&#34;https://github.com/ilri/OpenRXV/issues/40&#34;&gt;https://github.com/ilri/OpenRXV/issues/40&lt;/a&gt;&lt;/li&gt;
&lt;/ul&gt;</description>
</item>
<item> <item>
<title>August, 2020</title> <title>August, 2020</title>
<link>https://alanorth.github.io/cgspace-notes/2020-08/</link> <link>https://alanorth.github.io/cgspace-notes/2020-08/</link>

91
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@ -9,7 +9,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." /> <meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" /> <meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" /> <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" />
<meta property="og:updated_time" content="2020-08-22T13:29:08+03:00" /> <meta property="og:updated_time" content="2020-09-02T13:39:11+03:00" />
<meta name="twitter:card" content="summary"/> <meta name="twitter:card" content="summary"/>
<meta name="twitter:title" content="Posts"/> <meta name="twitter:title" content="Posts"/>
@ -28,7 +28,7 @@
"@type": "Person", "@type": "Person",
"name": "Alan Orth" "name": "Alan Orth"
}, },
"dateModified": "2020-08-02T15:35:54+03:00", "dateModified": "2020-09-02T15:35:54+03:00",
"keywords": "notes,""migration,""notes,", "keywords": "notes,""migration,""notes,",
"description":"Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." "description":"Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
} }
@ -95,6 +95,44 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2019-11/">November, 2019</a></h2>
<p class="blog-post-meta"><time datetime="2019-11-04T12:20:30+02:00">Mon Nov 04, 2019</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2019-11-04">2019-11-04</h2>
<ul>
<li>Peter noticed that there were 5.2 million hits on CGSpace in 2019-10 according to the Atmire usage statistics
<ul>
<li>I looked in the nginx logs and see 4.6 million in the access logs, and 1.2 million in the API logs:</li>
</ul>
</li>
</ul>
<pre><code># zcat --force /var/log/nginx/*access.log.*.gz | grep -cE &quot;[0-9]{1,2}/Oct/2019&quot;
4671942
# zcat --force /var/log/nginx/{rest,oai,statistics}.log.*.gz | grep -cE &quot;[0-9]{1,2}/Oct/2019&quot;
1277694
</code></pre><ul>
<li>So 4.6 million from XMLUI and another 1.2 million from API requests</li>
<li>Let&rsquo;s see how many of the REST API requests were for bitstreams (because they are counted in Solr stats):</li>
</ul>
<pre><code># zcat --force /var/log/nginx/rest.log.*.gz | grep -c -E &quot;[0-9]{1,2}/Oct/2019&quot;
1183456
# zcat --force /var/log/nginx/rest.log.*.gz | grep -E &quot;[0-9]{1,2}/Oct/2019&quot; | grep -c -E &quot;/rest/bitstreams&quot;
106781
</code></pre>
<a href='https://alanorth.github.io/cgspace-notes/2019-11/'>Read more →</a>
</article>
<article class="blog-post"> <article class="blog-post">
<header> <header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></h2> <h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/cgspace-cgcorev2-migration/">CGSpace CG Core v2 Migration</a></h2>
@ -370,51 +408,6 @@ $ ./delete-metadata-values.py -i /tmp/2019-02-21-delete-1-region.csv -db dspace
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2019-02/">February, 2019</a></h2>
<p class="blog-post-meta"><time datetime="2019-02-01T21:37:30+02:00">Fri Feb 01, 2019</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2019-02-01">2019-02-01</h2>
<ul>
<li>Linode has alerted a few times since last night that the CPU usage on CGSpace (linode18) was high despite me increasing the alert threshold last week from 250% to 275%—I might need to increase it again!</li>
<li>The top IPs before, during, and after this latest alert tonight were:</li>
</ul>
<pre><code># zcat --force /var/log/nginx/*.log /var/log/nginx/*.log.1 | grep -E &quot;01/Feb/2019:(17|18|19|20|21)&quot; | awk '{print $1}' | sort | uniq -c | sort -n | tail -n 10
245 207.46.13.5
332 54.70.40.11
385 5.143.231.38
405 207.46.13.173
405 207.46.13.75
1117 66.249.66.219
1121 35.237.175.180
1546 5.9.6.51
2474 45.5.186.2
5490 85.25.237.71
</code></pre><ul>
<li><code>85.25.237.71</code> is the &ldquo;Linguee Bot&rdquo; that I first saw last month</li>
<li>The Solr statistics the past few months have been very high and I was wondering if the web server logs also showed an increase</li>
<li>There were just over 3 million accesses in the nginx logs last month:</li>
</ul>
<pre><code># time zcat --force /var/log/nginx/* | grep -cE &quot;[0-9]{1,2}/Jan/2019&quot;
3018243
real 0m19.873s
user 0m22.203s
sys 0m1.979s
</code></pre>
<a href='https://alanorth.github.io/cgspace-notes/2019-02/'>Read more →</a>
</article>
<nav class="blog-pagination"> <nav class="blog-pagination">
<a class="btn btn-outline-primary" href="/cgspace-notes/posts/" rel="prev" role="button">Previous page</a> <a class="btn btn-outline-primary" href="/cgspace-notes/posts/" rel="prev" role="button">Previous page</a>
@ -439,6 +432,8 @@ sys 0m1.979s
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-09/">September, 2020</a></li>
<li><a href="/cgspace-notes/2020-08/">August, 2020</a></li> <li><a href="/cgspace-notes/2020-08/">August, 2020</a></li>
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li> <li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
@ -447,8 +442,6 @@ sys 0m1.979s
<li><a href="/cgspace-notes/2020-05/">May, 2020</a></li> <li><a href="/cgspace-notes/2020-05/">May, 2020</a></li>
<li><a href="/cgspace-notes/2020-04/">April, 2020</a></li>
</ol> </ol>
</section> </section>

75
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@ -9,7 +9,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." /> <meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" /> <meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" /> <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" />
<meta property="og:updated_time" content="2020-08-22T13:29:08+03:00" /> <meta property="og:updated_time" content="2020-09-02T13:39:11+03:00" />
<meta name="twitter:card" content="summary"/> <meta name="twitter:card" content="summary"/>
<meta name="twitter:title" content="Posts"/> <meta name="twitter:title" content="Posts"/>
@ -28,7 +28,7 @@
"@type": "Person", "@type": "Person",
"name": "Alan Orth" "name": "Alan Orth"
}, },
"dateModified": "2020-08-02T15:35:54+03:00", "dateModified": "2020-09-02T15:35:54+03:00",
"keywords": "notes,""migration,""notes,", "keywords": "notes,""migration,""notes,",
"description":"Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." "description":"Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
} }
@ -95,6 +95,51 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2019-02/">February, 2019</a></h2>
<p class="blog-post-meta"><time datetime="2019-02-01T21:37:30+02:00">Fri Feb 01, 2019</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2019-02-01">2019-02-01</h2>
<ul>
<li>Linode has alerted a few times since last night that the CPU usage on CGSpace (linode18) was high despite me increasing the alert threshold last week from 250% to 275%—I might need to increase it again!</li>
<li>The top IPs before, during, and after this latest alert tonight were:</li>
</ul>
<pre><code># zcat --force /var/log/nginx/*.log /var/log/nginx/*.log.1 | grep -E &quot;01/Feb/2019:(17|18|19|20|21)&quot; | awk '{print $1}' | sort | uniq -c | sort -n | tail -n 10
245 207.46.13.5
332 54.70.40.11
385 5.143.231.38
405 207.46.13.173
405 207.46.13.75
1117 66.249.66.219
1121 35.237.175.180
1546 5.9.6.51
2474 45.5.186.2
5490 85.25.237.71
</code></pre><ul>
<li><code>85.25.237.71</code> is the &ldquo;Linguee Bot&rdquo; that I first saw last month</li>
<li>The Solr statistics the past few months have been very high and I was wondering if the web server logs also showed an increase</li>
<li>There were just over 3 million accesses in the nginx logs last month:</li>
</ul>
<pre><code># time zcat --force /var/log/nginx/* | grep -cE &quot;[0-9]{1,2}/Jan/2019&quot;
3018243
real 0m19.873s
user 0m22.203s
sys 0m1.979s
</code></pre>
<a href='https://alanorth.github.io/cgspace-notes/2019-02/'>Read more →</a>
</article>
<article class="blog-post"> <article class="blog-post">
<header> <header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2019-01/">January, 2019</a></h2> <h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2019-01/">January, 2019</a></h2>
@ -353,28 +398,6 @@ sys 2m7.289s
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2018-04/">April, 2018</a></h2>
<p class="blog-post-meta"><time datetime="2018-04-01T16:13:54+02:00">Sun Apr 01, 2018</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2018-04-01">2018-04-01</h2>
<ul>
<li>I tried to test something on DSpace Test but noticed that it&rsquo;s down since god knows when</li>
<li>Catalina logs at least show some memory errors yesterday:</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2018-04/'>Read more →</a>
</article>
<nav class="blog-pagination"> <nav class="blog-pagination">
<a class="btn btn-outline-primary" href="/cgspace-notes/posts/page/2/" rel="prev" role="button">Previous page</a> <a class="btn btn-outline-primary" href="/cgspace-notes/posts/page/2/" rel="prev" role="button">Previous page</a>
@ -399,6 +422,8 @@ sys 2m7.289s
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-09/">September, 2020</a></li>
<li><a href="/cgspace-notes/2020-08/">August, 2020</a></li> <li><a href="/cgspace-notes/2020-08/">August, 2020</a></li>
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li> <li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
@ -407,8 +432,6 @@ sys 2m7.289s
<li><a href="/cgspace-notes/2020-05/">May, 2020</a></li> <li><a href="/cgspace-notes/2020-05/">May, 2020</a></li>
<li><a href="/cgspace-notes/2020-04/">April, 2020</a></li>
</ol> </ol>
</section> </section>

57
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View File

@ -9,7 +9,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." /> <meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" /> <meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" /> <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" />
<meta property="og:updated_time" content="2020-08-22T13:29:08+03:00" /> <meta property="og:updated_time" content="2020-09-02T13:39:11+03:00" />
<meta name="twitter:card" content="summary"/> <meta name="twitter:card" content="summary"/>
<meta name="twitter:title" content="Posts"/> <meta name="twitter:title" content="Posts"/>
@ -28,7 +28,7 @@
"@type": "Person", "@type": "Person",
"name": "Alan Orth" "name": "Alan Orth"
}, },
"dateModified": "2020-08-02T15:35:54+03:00", "dateModified": "2020-09-02T15:35:54+03:00",
"keywords": "notes,""migration,""notes,", "keywords": "notes,""migration,""notes,",
"description":"Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." "description":"Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
} }
@ -95,6 +95,28 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2018-04/">April, 2018</a></h2>
<p class="blog-post-meta"><time datetime="2018-04-01T16:13:54+02:00">Sun Apr 01, 2018</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2018-04-01">2018-04-01</h2>
<ul>
<li>I tried to test something on DSpace Test but noticed that it&rsquo;s down since god knows when</li>
<li>Catalina logs at least show some memory errors yesterday:</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2018-04/'>Read more →</a>
</article>
<article class="blog-post"> <article class="blog-post">
<header> <header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2018-03/">March, 2018</a></h2> <h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2018-03/">March, 2018</a></h2>
@ -390,33 +412,6 @@ COPY 54701
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2017-07/">July, 2017</a></h2>
<p class="blog-post-meta"><time datetime="2017-07-01T18:03:52+03:00">Sat Jul 01, 2017</time> by Alan Orth in
<span class="fas fa-tag" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/tags/notes/" rel="tag">Notes</a>
</p>
</header>
<h2 id="2017-07-01">2017-07-01</h2>
<ul>
<li>Run system updates and reboot DSpace Test</li>
</ul>
<h2 id="2017-07-04">2017-07-04</h2>
<ul>
<li>Merge changes for WLE Phase II theme rename (<a href="https://github.com/ilri/DSpace/pull/329">#329</a>)</li>
<li>Looking at extracting the metadata registries from ICARDA&rsquo;s MEL DSpace database so we can compare fields with CGSpace</li>
<li>We can use PostgreSQL&rsquo;s extended output format (<code>-x</code>) plus <code>sed</code> to format the output into quasi XML:</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2017-07/'>Read more →</a>
</article>
<nav class="blog-pagination"> <nav class="blog-pagination">
<a class="btn btn-outline-primary" href="/cgspace-notes/posts/page/3/" rel="prev" role="button">Previous page</a> <a class="btn btn-outline-primary" href="/cgspace-notes/posts/page/3/" rel="prev" role="button">Previous page</a>
@ -441,6 +436,8 @@ COPY 54701
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-09/">September, 2020</a></li>
<li><a href="/cgspace-notes/2020-08/">August, 2020</a></li> <li><a href="/cgspace-notes/2020-08/">August, 2020</a></li>
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li> <li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
@ -449,8 +446,6 @@ COPY 54701
<li><a href="/cgspace-notes/2020-05/">May, 2020</a></li> <li><a href="/cgspace-notes/2020-05/">May, 2020</a></li>
<li><a href="/cgspace-notes/2020-04/">April, 2020</a></li>
</ol> </ol>
</section> </section>

61
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View File

@ -9,7 +9,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." /> <meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" /> <meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" /> <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" />
<meta property="og:updated_time" content="2020-08-22T13:29:08+03:00" /> <meta property="og:updated_time" content="2020-09-02T13:39:11+03:00" />
<meta name="twitter:card" content="summary"/> <meta name="twitter:card" content="summary"/>
<meta name="twitter:title" content="Posts"/> <meta name="twitter:title" content="Posts"/>
@ -28,7 +28,7 @@
"@type": "Person", "@type": "Person",
"name": "Alan Orth" "name": "Alan Orth"
}, },
"dateModified": "2020-08-02T15:35:54+03:00", "dateModified": "2020-09-02T15:35:54+03:00",
"keywords": "notes,""migration,""notes,", "keywords": "notes,""migration,""notes,",
"description":"Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." "description":"Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
} }
@ -95,6 +95,33 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2017-07/">July, 2017</a></h2>
<p class="blog-post-meta"><time datetime="2017-07-01T18:03:52+03:00">Sat Jul 01, 2017</time> by Alan Orth in
<span class="fas fa-tag" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/tags/notes/" rel="tag">Notes</a>
</p>
</header>
<h2 id="2017-07-01">2017-07-01</h2>
<ul>
<li>Run system updates and reboot DSpace Test</li>
</ul>
<h2 id="2017-07-04">2017-07-04</h2>
<ul>
<li>Merge changes for WLE Phase II theme rename (<a href="https://github.com/ilri/DSpace/pull/329">#329</a>)</li>
<li>Looking at extracting the metadata registries from ICARDA&rsquo;s MEL DSpace database so we can compare fields with CGSpace</li>
<li>We can use PostgreSQL&rsquo;s extended output format (<code>-x</code>) plus <code>sed</code> to format the output into quasi XML:</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2017-07/'>Read more →</a>
</article>
<article class="blog-post"> <article class="blog-post">
<header> <header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2017-06/">June, 2017</a></h2> <h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2017-06/">June, 2017</a></h2>
@ -336,32 +363,6 @@ DELETE 1
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2016-09/">September, 2016</a></h2>
<p class="blog-post-meta"><time datetime="2016-09-01T15:53:00+03:00">Thu Sep 01, 2016</time> by Alan Orth in
<span class="fas fa-tag" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/tags/notes/" rel="tag">Notes</a>
</p>
</header>
<h2 id="2016-09-01">2016-09-01</h2>
<ul>
<li>Discuss helping CCAFS with some batch tagging of ORCID IDs for their authors</li>
<li>Discuss how the migration of CGIAR&rsquo;s Active Directory to a flat structure will break our LDAP groups in DSpace</li>
<li>We had been using <code>DC=ILRI</code> to determine whether a user was ILRI or not</li>
<li>It looks like we might be able to use OUs now, instead of DCs:</li>
</ul>
<pre><code>$ ldapsearch -x -H ldaps://svcgroot2.cgiarad.org:3269/ -b &quot;dc=cgiarad,dc=org&quot; -D &quot;admigration1@cgiarad.org&quot; -W &quot;(sAMAccountName=admigration1)&quot;
</code></pre>
<a href='https://alanorth.github.io/cgspace-notes/2016-09/'>Read more →</a>
</article>
<nav class="blog-pagination"> <nav class="blog-pagination">
<a class="btn btn-outline-primary" href="/cgspace-notes/posts/page/4/" rel="prev" role="button">Previous page</a> <a class="btn btn-outline-primary" href="/cgspace-notes/posts/page/4/" rel="prev" role="button">Previous page</a>
@ -386,6 +387,8 @@ DELETE 1
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-09/">September, 2020</a></li>
<li><a href="/cgspace-notes/2020-08/">August, 2020</a></li> <li><a href="/cgspace-notes/2020-08/">August, 2020</a></li>
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li> <li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
@ -394,8 +397,6 @@ DELETE 1
<li><a href="/cgspace-notes/2020-05/">May, 2020</a></li> <li><a href="/cgspace-notes/2020-05/">May, 2020</a></li>
<li><a href="/cgspace-notes/2020-04/">April, 2020</a></li>
</ol> </ol>
</section> </section>

64
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@ -9,7 +9,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." /> <meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" /> <meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" /> <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" />
<meta property="og:updated_time" content="2020-08-22T13:29:08+03:00" /> <meta property="og:updated_time" content="2020-09-02T13:39:11+03:00" />
<meta name="twitter:card" content="summary"/> <meta name="twitter:card" content="summary"/>
<meta name="twitter:title" content="Posts"/> <meta name="twitter:title" content="Posts"/>
@ -28,7 +28,7 @@
"@type": "Person", "@type": "Person",
"name": "Alan Orth" "name": "Alan Orth"
}, },
"dateModified": "2020-08-02T15:35:54+03:00", "dateModified": "2020-09-02T15:35:54+03:00",
"keywords": "notes,""migration,""notes,", "keywords": "notes,""migration,""notes,",
"description":"Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." "description":"Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
} }
@ -95,6 +95,32 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2016-09/">September, 2016</a></h2>
<p class="blog-post-meta"><time datetime="2016-09-01T15:53:00+03:00">Thu Sep 01, 2016</time> by Alan Orth in
<span class="fas fa-tag" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/tags/notes/" rel="tag">Notes</a>
</p>
</header>
<h2 id="2016-09-01">2016-09-01</h2>
<ul>
<li>Discuss helping CCAFS with some batch tagging of ORCID IDs for their authors</li>
<li>Discuss how the migration of CGIAR&rsquo;s Active Directory to a flat structure will break our LDAP groups in DSpace</li>
<li>We had been using <code>DC=ILRI</code> to determine whether a user was ILRI or not</li>
<li>It looks like we might be able to use OUs now, instead of DCs:</li>
</ul>
<pre><code>$ ldapsearch -x -H ldaps://svcgroot2.cgiarad.org:3269/ -b &quot;dc=cgiarad,dc=org&quot; -D &quot;admigration1@cgiarad.org&quot; -W &quot;(sAMAccountName=admigration1)&quot;
</code></pre>
<a href='https://alanorth.github.io/cgspace-notes/2016-09/'>Read more →</a>
</article>
<article class="blog-post"> <article class="blog-post">
<header> <header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2016-08/">August, 2016</a></h2> <h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2016-08/">August, 2016</a></h2>
@ -333,37 +359,11 @@ dspacetest=# select text_value from metadatavalue where metadata_field_id=3 and
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2015-11/">November, 2015</a></h2>
<p class="blog-post-meta"><time datetime="2015-11-23T17:00:57+03:00">Mon Nov 23, 2015</time> by Alan Orth in
<span class="fas fa-tag" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/tags/notes/" rel="tag">Notes</a>
</p>
</header>
<h2 id="2015-11-22">2015-11-22</h2>
<ul>
<li>CGSpace went down</li>
<li>Looks like DSpace exhausted its PostgreSQL connection pool</li>
<li>Last week I had increased the limit from 30 to 60, which seemed to help, but now there are many more idle connections:</li>
</ul>
<pre><code>$ psql -c 'SELECT * from pg_stat_activity;' | grep idle | grep -c cgspace
78
</code></pre>
<a href='https://alanorth.github.io/cgspace-notes/2015-11/'>Read more →</a>
</article>
<nav class="blog-pagination"> <nav class="blog-pagination">
<a class="btn btn-outline-primary" href="/cgspace-notes/posts/page/5/" rel="prev" role="button">Previous page</a> <a class="btn btn-outline-primary" href="/cgspace-notes/posts/page/5/" rel="prev" role="button">Previous page</a>
<a class="btn btn-outline-primary disabled" href="#" role="button" aria-disabled="true">Next page</a> <a class="btn btn-outline-primary" href="/cgspace-notes/posts/page/7/" rel="next" role="button">Next page</a>
</nav> </nav>
@ -383,6 +383,8 @@ dspacetest=# select text_value from metadatavalue where metadata_field_id=3 and
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-09/">September, 2020</a></li>
<li><a href="/cgspace-notes/2020-08/">August, 2020</a></li> <li><a href="/cgspace-notes/2020-08/">August, 2020</a></li>
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li> <li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
@ -391,8 +393,6 @@ dspacetest=# select text_value from metadatavalue where metadata_field_id=3 and
<li><a href="/cgspace-notes/2020-05/">May, 2020</a></li> <li><a href="/cgspace-notes/2020-05/">May, 2020</a></li>
<li><a href="/cgspace-notes/2020-04/">April, 2020</a></li>
</ol> </ol>
</section> </section>

198
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@ -0,0 +1,198 @@
<!DOCTYPE html>
<html lang="en" >
<head>
<meta charset="utf-8">
<meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no">
<meta property="og:title" content="Posts" />
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" />
<meta property="og:updated_time" content="2020-09-02T13:39:11+03:00" />
<meta name="twitter:card" content="summary"/>
<meta name="twitter:title" content="Posts"/>
<meta name="twitter:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."/>
<meta name="generator" content="Hugo 0.74.3" />
<script type="application/ld+json">
{
"@context": "http://schema.org",
"@type": "Blog",
"headline": "CGSpace Notes",
"url" : "https://alanorth.github.io/cgspace-notes/posts/",
"author": {
"@type": "Person",
"name": "Alan Orth"
},
"dateModified": "2020-09-02T15:35:54+03:00",
"keywords": "notes,""migration,""notes,",
"description":"Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
}
</script>
<link rel="canonical" href="https://alanorth.github.io/cgspace-notes/posts/">
<title>CGSpace Notes</title>
<!-- combined, minified CSS -->
<link href="https://alanorth.github.io/cgspace-notes/css/style.6da5c906cc7a8fbb93f31cd2316c5dbe3f19ac4aa6bfb066f1243045b8f6061e.css" rel="stylesheet" integrity="sha256-baXJBsx6j7uT8xzSMWxdvj8ZrEqmv7Bm8SQwRbj2Bh4=" crossorigin="anonymous">
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<script defer src="https://alanorth.github.io/cgspace-notes/js/fontawesome.min.f3d2a1f5980bab30ddd0d8cadbd496475309fc48e2b1d052c5c09e6facffcb0f.js" integrity="sha256-89Kh9ZgLqzDd0NjK29SWR1MJ/EjisdBSxcCeb6z/yw8=" crossorigin="anonymous"></script>
<!-- RSS 2.0 feed -->
<link rel="alternate" type="application/rss+xml" href="https://alanorth.github.io/cgspace-notes/posts/index.xml" title="CGSpace Notes" />
</head>
<body>
<div class="blog-masthead">
<div class="container">
<nav class="nav blog-nav">
<a class="nav-link " href="https://alanorth.github.io/cgspace-notes/">Home</a>
</nav>
</div>
</div>
<header class="blog-header">
<div class="container">
<h1 class="blog-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/" rel="home">CGSpace Notes</a></h1>
<p class="lead blog-description" dir="auto">Documenting day-to-day work on the <a href="https://cgspace.cgiar.org">CGSpace</a> repository.</p>
</div>
</header>
<div class="container">
<div class="row">
<div class="col-sm-8 blog-main">
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2015-11/">November, 2015</a></h2>
<p class="blog-post-meta"><time datetime="2015-11-23T17:00:57+03:00">Mon Nov 23, 2015</time> by Alan Orth in
<span class="fas fa-tag" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/tags/notes/" rel="tag">Notes</a>
</p>
</header>
<h2 id="2015-11-22">2015-11-22</h2>
<ul>
<li>CGSpace went down</li>
<li>Looks like DSpace exhausted its PostgreSQL connection pool</li>
<li>Last week I had increased the limit from 30 to 60, which seemed to help, but now there are many more idle connections:</li>
</ul>
<pre><code>$ psql -c 'SELECT * from pg_stat_activity;' | grep idle | grep -c cgspace
78
</code></pre>
<a href='https://alanorth.github.io/cgspace-notes/2015-11/'>Read more →</a>
</article>
<nav class="blog-pagination">
<a class="btn btn-outline-primary" href="/cgspace-notes/posts/page/6/" rel="prev" role="button">Previous page</a>
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</nav>
</div> <!-- /.blog-main -->
<aside class="col-sm-3 ml-auto blog-sidebar">
<section class="sidebar-module">
<h4>Recent Posts</h4>
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-09/">September, 2020</a></li>
<li><a href="/cgspace-notes/2020-08/">August, 2020</a></li>
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
<li><a href="/cgspace-notes/2020-06/">June, 2020</a></li>
<li><a href="/cgspace-notes/2020-05/">May, 2020</a></li>
</ol>
</section>
<section class="sidebar-module">
<h4>Links</h4>
<ol class="list-unstyled">
<li><a href="https://cgspace.cgiar.org">CGSpace</a></li>
<li><a href="https://dspacetest.cgiar.org">DSpace Test</a></li>
<li><a href="https://github.com/ilri/DSpace">CGSpace @ GitHub</a></li>
</ol>
</section>
</aside>
</div> <!-- /.row -->
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<footer class="blog-footer">
<p dir="auto">
Blog template created by <a href="https://twitter.com/mdo">@mdo</a>, ported to Hugo by <a href='https://twitter.com/mralanorth'>@mralanorth</a>.
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3
docs/robots.txt
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@ -1,11 +1,12 @@
User-agent: * User-agent: *
Disallow: /cgspace-notes/2020-08/
Disallow: /cgspace-notes/categories/ Disallow: /cgspace-notes/categories/
Disallow: /cgspace-notes/ Disallow: /cgspace-notes/
Disallow: /cgspace-notes/categories/notes/ Disallow: /cgspace-notes/categories/notes/
Disallow: /cgspace-notes/posts/ Disallow: /cgspace-notes/posts/
Disallow: /cgspace-notes/2020-09/
Disallow: /cgspace-notes/2020-08/
Disallow: /cgspace-notes/2020-07/ Disallow: /cgspace-notes/2020-07/
Disallow: /cgspace-notes/2020-06/ Disallow: /cgspace-notes/2020-06/
Disallow: /cgspace-notes/2020-05/ Disallow: /cgspace-notes/2020-05/

23
docs/sitemap.xml
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@ -2,29 +2,34 @@
<urlset xmlns="http://www.sitemaps.org/schemas/sitemap/0.9" <urlset xmlns="http://www.sitemaps.org/schemas/sitemap/0.9"
xmlns:xhtml="http://www.w3.org/1999/xhtml"> xmlns:xhtml="http://www.w3.org/1999/xhtml">
<url>
<loc>https://alanorth.github.io/cgspace-notes/2020-08/</loc>
<lastmod>2020-08-22T13:29:08+03:00</lastmod>
</url>
<url> <url>
<loc>https://alanorth.github.io/cgspace-notes/categories/</loc> <loc>https://alanorth.github.io/cgspace-notes/categories/</loc>
<lastmod>2020-08-22T13:29:08+03:00</lastmod> <lastmod>2020-09-02T13:39:11+03:00</lastmod>
</url> </url>
<url> <url>
<loc>https://alanorth.github.io/cgspace-notes/</loc> <loc>https://alanorth.github.io/cgspace-notes/</loc>
<lastmod>2020-08-22T13:29:08+03:00</lastmod> <lastmod>2020-09-02T13:39:11+03:00</lastmod>
</url> </url>
<url> <url>
<loc>https://alanorth.github.io/cgspace-notes/categories/notes/</loc> <loc>https://alanorth.github.io/cgspace-notes/categories/notes/</loc>
<lastmod>2020-08-22T13:29:08+03:00</lastmod> <lastmod>2020-09-02T13:39:11+03:00</lastmod>
</url> </url>
<url> <url>
<loc>https://alanorth.github.io/cgspace-notes/posts/</loc> <loc>https://alanorth.github.io/cgspace-notes/posts/</loc>
<lastmod>2020-08-22T13:29:08+03:00</lastmod> <lastmod>2020-09-02T13:39:11+03:00</lastmod>
</url>
<url>
<loc>https://alanorth.github.io/cgspace-notes/2020-09/</loc>
<lastmod>2020-09-02T13:39:11+03:00</lastmod>
</url>
<url>
<loc>https://alanorth.github.io/cgspace-notes/2020-08/</loc>
<lastmod>2020-09-02T13:39:11+03:00</lastmod>
</url> </url>
<url> <url>

4
docs/tags/index.html
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@ -121,6 +121,8 @@
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-09/">September, 2020</a></li>
<li><a href="/cgspace-notes/2020-08/">August, 2020</a></li> <li><a href="/cgspace-notes/2020-08/">August, 2020</a></li>
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li> <li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
@ -129,8 +131,6 @@
<li><a href="/cgspace-notes/2020-05/">May, 2020</a></li> <li><a href="/cgspace-notes/2020-05/">May, 2020</a></li>
<li><a href="/cgspace-notes/2020-04/">April, 2020</a></li>
</ol> </ol>
</section> </section>

4
docs/tags/migration/index.html
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@ -134,6 +134,8 @@
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-09/">September, 2020</a></li>
<li><a href="/cgspace-notes/2020-08/">August, 2020</a></li> <li><a href="/cgspace-notes/2020-08/">August, 2020</a></li>
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li> <li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
@ -142,8 +144,6 @@
<li><a href="/cgspace-notes/2020-05/">May, 2020</a></li> <li><a href="/cgspace-notes/2020-05/">May, 2020</a></li>
<li><a href="/cgspace-notes/2020-04/">April, 2020</a></li>
</ol> </ol>
</section> </section>

4
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@ -384,6 +384,8 @@ DELETE 1
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-09/">September, 2020</a></li>
<li><a href="/cgspace-notes/2020-08/">August, 2020</a></li> <li><a href="/cgspace-notes/2020-08/">August, 2020</a></li>
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li> <li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
@ -392,8 +394,6 @@ DELETE 1
<li><a href="/cgspace-notes/2020-05/">May, 2020</a></li> <li><a href="/cgspace-notes/2020-05/">May, 2020</a></li>
<li><a href="/cgspace-notes/2020-04/">April, 2020</a></li>
</ol> </ol>
</section> </section>

4
docs/tags/notes/page/2/index.html
View File

@ -370,6 +370,8 @@ dspacetest=# select text_value from metadatavalue where metadata_field_id=3 and
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-09/">September, 2020</a></li>
<li><a href="/cgspace-notes/2020-08/">August, 2020</a></li> <li><a href="/cgspace-notes/2020-08/">August, 2020</a></li>
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li> <li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
@ -378,8 +380,6 @@ dspacetest=# select text_value from metadatavalue where metadata_field_id=3 and
<li><a href="/cgspace-notes/2020-05/">May, 2020</a></li> <li><a href="/cgspace-notes/2020-05/">May, 2020</a></li>
<li><a href="/cgspace-notes/2020-04/">April, 2020</a></li>
</ol> </ol>
</section> </section>

4
docs/tags/notes/page/3/index.html
View File

@ -179,6 +179,8 @@
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2020-09/">September, 2020</a></li>
<li><a href="/cgspace-notes/2020-08/">August, 2020</a></li> <li><a href="/cgspace-notes/2020-08/">August, 2020</a></li>
<li><a href="/cgspace-notes/2020-07/">July, 2020</a></li> <li><a href="/cgspace-notes/2020-07/">July, 2020</a></li>
@ -187,8 +189,6 @@
<li><a href="/cgspace-notes/2020-05/">May, 2020</a></li> <li><a href="/cgspace-notes/2020-05/">May, 2020</a></li>
<li><a href="/cgspace-notes/2020-04/">April, 2020</a></li>
</ol> </ol>
</section> </section>