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content/2016-09.md
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content/2016-09.md
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+++
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date = "2016-09-01T15:53:00+03:00"
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author = "Alan Orth"
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title = "September, 2016"
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tags = ["notes"]
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image = "../images/bg.jpg"
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+++
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## 2016-09-01
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- Discuss helping CCAFS with some batch tagging of ORCID IDs for their authors
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- Discuss how the migration of CGIAR's Active Directory to a flat structure will break our LDAP groups in DSpace
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- We had been using `DC=ILRI` to determine whether a user was ILRI or not
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- It looks like we might be able to use OUs now, instead of DCs:
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```
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$ ldapsearch -x -H ldaps://svcgroot2.cgiarad.org:3269/ -b "dc=cgiarad,dc=org" -D "admigration1@cgiarad.org" -W "(sAMAccountName=admigration1)"
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```
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- User who has been migrated to the root vs user still in the hierarchical structure:
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```
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distinguishedName: CN=Last\, First (ILRI),OU=ILRI Kenya Employees,OU=ILRI Kenya,OU=ILRIHUB,DC=CGIARAD,DC=ORG
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distinguishedName: CN=Last\, First (ILRI),OU=ILRI Ethiopia Employees,OU=ILRI Ethiopia,DC=ILRI,DC=CGIARAD,DC=ORG
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```
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- Notes for local PostgreSQL database recreation from production snapshot:
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```
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$ dropdb dspacetest
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$ createdb -O dspacetest --encoding=UNICODE dspacetest
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$ psql dspacetest -c 'alter user dspacetest createuser;'
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$ pg_restore -O -U dspacetest -d dspacetest ~/Downloads/cgspace_2016-09-01.backup
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$ psql dspacetest -c 'alter user dspacetest nocreateuser;'
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$ psql -U dspacetest -f ~/src/git/DSpace/dspace/etc/postgres/update-sequences.sql dspacetest -h localhost
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$ vacuumdb dspacetest
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```
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@ -424,7 +424,7 @@ $ JAVA_OPTS="-Dfile.encoding=UTF-8 -Xmx512m" /home/cgspace.cgiar.org/b
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<li class="previous"><a href="https://alanorth.github.io/cgspace-notes/2016-07/"><span aria-hidden="true">←</span> Older</a></li>
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<li class="next disabled"><a href="#">Newer <span aria-hidden="true">→</span></a></li>
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<li class="next"><a href="https://alanorth.github.io/cgspace-notes/2016-09/">Newer <span aria-hidden="true">→</span></a></li>
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</footer>
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public/2016-09/index.html
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public/2016-09/index.html
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<!DOCTYPE html>
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<html lang="en-us">
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<head prefix="og: http://ogp.me/ns#">
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<meta charset="utf-8" />
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<meta name="viewport" content="width=device-width, initial-scale=1.0, maximum-scale=1" />
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<meta property="og:title" content=" September, 2016 · CGSpace Notes" />
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<meta property="og:site_name" content="CGSpace Notes" />
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<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/2016-09/" />
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<meta property="og:type" content="article" />
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<meta property="og:article:published_time" content="2016-09-01T15:53:00+03:00" />
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<meta property="og:article:tag" content="notes" />
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<title>
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September, 2016 · CGSpace Notes
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</title>
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<link rel="stylesheet" href="https://alanorth.github.io/cgspace-notes/css/bootstrap.min.css" />
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<link rel="stylesheet" href="https://alanorth.github.io/cgspace-notes/css/main.css" />
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<link rel="stylesheet" href="https://alanorth.github.io/cgspace-notes/css/font-awesome.min.css" />
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<link rel="stylesheet" href="https://alanorth.github.io/cgspace-notes/css/github.css" />
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<link rel="stylesheet" href="//fonts.googleapis.com/css?family=Source+Sans+Pro:200,300,400" type="text/css">
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<link rel="shortcut icon" href="https://alanorth.github.io/cgspace-notes/images/favicon.ico" />
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<link rel="apple-touch-icon" href="https://alanorth.github.io/cgspace-notes/images/apple-touch-icon.png" />
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</head>
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<body>
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<header class="global-header" style="background-image:url(../images/bg.jpg )">
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<section class="header-text">
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<h1><a href="https://alanorth.github.io/cgspace-notes/">CGSpace Notes</a></h1>
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<div class="sns-links hidden-print">
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</div>
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<a href="https://alanorth.github.io/cgspace-notes/" class="btn-header btn-back hidden-xs">
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<i class="fa fa-angle-left" aria-hidden="true"></i>
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Home
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</a>
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</section>
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</header>
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<main class="container">
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<article>
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<header>
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<h1 class="text-primary">September, 2016</h1>
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<div class="post-meta clearfix">
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<div class="post-date pull-left">
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Posted on
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<time datetime="2016-09-01T15:53:00+03:00">
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Sep 1, 2016
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</time>
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</div>
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<div class="pull-right">
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<span class="post-tag small"><a href="https://alanorth.github.io/cgspace-notes//tags/notes">#notes</a></span>
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</div>
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</div>
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</header>
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<section>
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<h2 id="2016-09-01">2016-09-01</h2>
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<ul>
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<li>Discuss helping CCAFS with some batch tagging of ORCID IDs for their authors</li>
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<li>Discuss how the migration of CGIAR’s Active Directory to a flat structure will break our LDAP groups in DSpace</li>
|
||||
<li>We had been using <code>DC=ILRI</code> to determine whether a user was ILRI or not</li>
|
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<li>It looks like we might be able to use OUs now, instead of DCs:</li>
|
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</ul>
|
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<pre><code>$ ldapsearch -x -H ldaps://svcgroot2.cgiarad.org:3269/ -b "dc=cgiarad,dc=org" -D "admigration1@cgiarad.org" -W "(sAMAccountName=admigration1)"
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</code></pre>
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<ul>
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<li>User who has been migrated to the root vs user still in the hierarchical structure:</li>
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</ul>
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<pre><code>distinguishedName: CN=Last\, First (ILRI),OU=ILRI Kenya Employees,OU=ILRI Kenya,OU=ILRIHUB,DC=CGIARAD,DC=ORG
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distinguishedName: CN=Last\, First (ILRI),OU=ILRI Ethiopia Employees,OU=ILRI Ethiopia,DC=ILRI,DC=CGIARAD,DC=ORG
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</code></pre>
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<ul>
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<li>Notes for local PostgreSQL database recreation from production snapshot:</li>
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</ul>
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<pre><code>$ dropdb dspacetest
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$ createdb -O dspacetest --encoding=UNICODE dspacetest
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$ psql dspacetest -c 'alter user dspacetest createuser;'
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$ pg_restore -O -U dspacetest -d dspacetest ~/Downloads/cgspace_2016-09-01.backup
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$ psql dspacetest -c 'alter user dspacetest nocreateuser;'
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$ psql -U dspacetest -f ~/src/git/DSpace/dspace/etc/postgres/update-sequences.sql dspacetest -h localhost
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$ vacuumdb dspacetest
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</code></pre>
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</section>
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<footer>
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<section class="author-info row">
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<div class="author-avatar col-md-2">
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</div>
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<div class="author-meta col-md-6">
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<h1 class="author-name text-primary">Alan Orth</h1>
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</div>
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</section>
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<ul class="pager">
|
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<li class="previous"><a href="https://alanorth.github.io/cgspace-notes/2016-08/"><span aria-hidden="true">←</span> Older</a></li>
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|
||||
<li class="next disabled"><a href="#">Newer <span aria-hidden="true">→</span></a></li>
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|
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</ul>
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</footer>
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</article>
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</main>
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<footer class="container global-footer">
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<div class="copyright-note pull-left">
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</div>
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<div class="sns-links hidden-print">
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</div>
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</footer>
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<script src="https://alanorth.github.io/cgspace-notes/js/highlight.pack.js"></script>
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<script>
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hljs.initHighlightingOnLoad();
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</script>
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</body>
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</html>
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@ -58,6 +58,34 @@
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<div class="article-list">
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<article>
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<header>
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<h2><a href="https://alanorth.github.io/cgspace-notes/2016-09/">September, 2016</a></h2>
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<div class="post-meta clearfix">
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<div class="post-date pull-left">
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Posted on
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<time datetime="2016-09-01T15:53:00+03:00">
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Sep 1, 2016
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</time>
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</div>
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</div>
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</header>
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<div>
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2016-09-01 Discuss helping CCAFS with some batch tagging of ORCID IDs for their authors Discuss how the migration of CGIAR’s Active Directory to a flat structure will break our LDAP groups in DSpace We had been using DC=ILRI to determine whether a user was ILRI or not It looks like we might be able to use OUs now, instead of DCs: $ ldapsearch -x -H ldaps://svcgroot2.cgiarad.org:3269/ -b "dc=cgiarad,dc=org" -D "admigration1@cgiarad.org"
|
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</div>
|
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|
||||
<footer>
|
||||
<ul class="pager">
|
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<li class="next"><a href="https://alanorth.github.io/cgspace-notes/2016-09/">Read more <span aria-hidden="true">»</span></a></li>
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</ul>
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</footer>
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</article>
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<hr/>
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<article>
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<header>
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<h2><a href="https://alanorth.github.io/cgspace-notes/2016-08/">August, 2016</a></h2>
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@ -307,39 +335,15 @@
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</article>
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<hr/>
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<article>
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<header>
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<h2><a href="https://alanorth.github.io/cgspace-notes/2015-11/">November, 2015</a></h2>
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<div class="post-meta clearfix">
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<div class="post-date pull-left">
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Posted on
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<time datetime="2015-11-23T17:00:57+03:00">
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Nov 23, 2015
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</time>
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</div>
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</div>
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</header>
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<div>
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2015-11-22 CGSpace went down Looks like DSpace exhausted its PostgreSQL connection pool Last week I had increased the limit from 30 to 60, which seemed to help, but now there are many more idle connections: $ psql -c 'SELECT * from pg_stat_activity;' | grep idle | grep -c cgspace 78 For now I have increased the limit from 60 to 90, run updates, and rebooted the server 2015-11-24 CGSpace went down again Getting emails from uptimeRobot and uptimeButler that it’s down, and Google Webmaster Tools is sending emails that there is an increase in crawl errors Looks like there are still a bunch of idle PostgreSQL connections: $ psql -c 'SELECT * from pg_stat_activity;' | grep idle | grep -c cgspace 96 For some reason the number of idle connections is very high since we upgraded to DSpace 5 2015-11-25 Troubleshoot the DSpace 5 OAI breakage caused by nginx routing config The OAI application requests stylesheets and javascript files with the path /oai/static/css, which gets matched here: # static assets we can load from the file system directly with nginx location ~ /(themes|static|aspects/ReportingSuite) { try_files $uri @tomcat; ...
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</div>
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<footer>
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<ul class="pager">
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<li class="next"><a href="https://alanorth.github.io/cgspace-notes/2015-11/">Read more <span aria-hidden="true">»</span></a></li>
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</ul>
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</footer>
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</article>
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</div>
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<nav class="pagination" role="navigation">
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<hr />
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<span class="page-number">Page 1 of 1</span>
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<span class="page-number">Page 1 of 2</span>
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<a class="older-posts" href="/page/2/">Older Posts <span aria-hidden="true">»</span></a>
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@ -6,9 +6,52 @@
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<description>Recent content on CGSpace Notes</description>
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<generator>Hugo -- gohugo.io</generator>
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<language>en-us</language>
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<lastBuildDate>Mon, 01 Aug 2016 15:53:00 +0300</lastBuildDate>
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<lastBuildDate>Thu, 01 Sep 2016 15:53:00 +0300</lastBuildDate>
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<atom:link href="https://alanorth.github.io/cgspace-notes/index.xml" rel="self" type="application/rss+xml" />
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<item>
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||||
<title>September, 2016</title>
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<link>https://alanorth.github.io/cgspace-notes/2016-09/</link>
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<pubDate>Thu, 01 Sep 2016 15:53:00 +0300</pubDate>
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<guid>https://alanorth.github.io/cgspace-notes/2016-09/</guid>
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<description>
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||||
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<h2 id="2016-09-01">2016-09-01</h2>
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<ul>
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<li>Discuss helping CCAFS with some batch tagging of ORCID IDs for their authors</li>
|
||||
<li>Discuss how the migration of CGIAR&rsquo;s Active Directory to a flat structure will break our LDAP groups in DSpace</li>
|
||||
<li>We had been using <code>DC=ILRI</code> to determine whether a user was ILRI or not</li>
|
||||
<li>It looks like we might be able to use OUs now, instead of DCs:</li>
|
||||
</ul>
|
||||
|
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<pre><code>$ ldapsearch -x -H ldaps://svcgroot2.cgiarad.org:3269/ -b &quot;dc=cgiarad,dc=org&quot; -D &quot;admigration1@cgiarad.org&quot; -W &quot;(sAMAccountName=admigration1)&quot;
|
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</code></pre>
|
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<ul>
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<li>User who has been migrated to the root vs user still in the hierarchical structure:</li>
|
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</ul>
|
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|
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<pre><code>distinguishedName: CN=Last\, First (ILRI),OU=ILRI Kenya Employees,OU=ILRI Kenya,OU=ILRIHUB,DC=CGIARAD,DC=ORG
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distinguishedName: CN=Last\, First (ILRI),OU=ILRI Ethiopia Employees,OU=ILRI Ethiopia,DC=ILRI,DC=CGIARAD,DC=ORG
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</code></pre>
|
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<ul>
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<li>Notes for local PostgreSQL database recreation from production snapshot:</li>
|
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</ul>
|
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|
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<pre><code>$ dropdb dspacetest
|
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$ createdb -O dspacetest --encoding=UNICODE dspacetest
|
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$ psql dspacetest -c 'alter user dspacetest createuser;'
|
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$ pg_restore -O -U dspacetest -d dspacetest ~/Downloads/cgspace_2016-09-01.backup
|
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$ psql dspacetest -c 'alter user dspacetest nocreateuser;'
|
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$ psql -U dspacetest -f ~/src/git/DSpace/dspace/etc/postgres/update-sequences.sql dspacetest -h localhost
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$ vacuumdb dspacetest
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</code></pre>
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</description>
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</item>
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<item>
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<title>August, 2016</title>
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<link>https://alanorth.github.io/cgspace-notes/2016-08/</link>
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126
public/page/2/index.html
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126
public/page/2/index.html
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<meta property="og:site_name" content="CGSpace Notes" />
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<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />
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|
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<h1><a href="https://alanorth.github.io/cgspace-notes/">CGSpace Notes</a></h1>
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<h2><a href="https://alanorth.github.io/cgspace-notes/2015-11/">November, 2015</a></h2>
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<div class="post-date pull-left">
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Posted on
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<time datetime="2015-11-23T17:00:57+03:00">
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Nov 23, 2015
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2015-11-22 CGSpace went down Looks like DSpace exhausted its PostgreSQL connection pool Last week I had increased the limit from 30 to 60, which seemed to help, but now there are many more idle connections: $ psql -c 'SELECT * from pg_stat_activity;' | grep idle | grep -c cgspace 78 For now I have increased the limit from 60 to 90, run updates, and rebooted the server 2015-11-24 CGSpace went down again Getting emails from uptimeRobot and uptimeButler that it’s down, and Google Webmaster Tools is sending emails that there is an increase in crawl errors Looks like there are still a bunch of idle PostgreSQL connections: $ psql -c 'SELECT * from pg_stat_activity;' | grep idle | grep -c cgspace 96 For some reason the number of idle connections is very high since we upgraded to DSpace 5 2015-11-25 Troubleshoot the DSpace 5 OAI breakage caused by nginx routing config The OAI application requests stylesheets and javascript files with the path /oai/static/css, which gets matched here: # static assets we can load from the file system directly with nginx location ~ /(themes|static|aspects/ReportingSuite) { try_files $uri @tomcat; ...
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@ -3,7 +3,12 @@
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<url>
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||||
<loc>https://alanorth.github.io/cgspace-notes/</loc>
|
||||
<lastmod>2016-08-01T15:53:00+03:00</lastmod>
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<lastmod>2016-09-01T15:53:00+03:00</lastmod>
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</url>
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<url>
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||||
<loc>https://alanorth.github.io/cgspace-notes/2016-09/</loc>
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<lastmod>2016-09-01T15:53:00+03:00</lastmod>
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</url>
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<url>
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||||
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||||
@ -64,7 +64,7 @@
|
||||
<ul>
|
||||
|
||||
|
||||
<li><a href="https://alanorth.github.io/cgspace-notes//tags/notes">notes</a> 10</li>
|
||||
<li><a href="https://alanorth.github.io/cgspace-notes//tags/notes">notes</a> 11</li>
|
||||
|
||||
</ul>
|
||||
</section>
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|
||||
@ -61,6 +61,32 @@
|
||||
<section class="article-list">
|
||||
<h1>Notes</h1>
|
||||
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||||
<hr/>
|
||||
<article>
|
||||
<header>
|
||||
<h2><a href="https://alanorth.github.io/cgspace-notes/2016-09/">September, 2016</a></h2>
|
||||
<div class="post-meta clearfix">
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<div class="post-date pull-left">
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Posted on
|
||||
<time datetime="2016-09-01T15:53:00+03:00">
|
||||
Sep 1, 2016
|
||||
</time>
|
||||
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|
||||
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|
||||
</header>
|
||||
<div>
|
||||
2016-09-01 Discuss helping CCAFS with some batch tagging of ORCID IDs for their authors Discuss how the migration of CGIAR’s Active Directory to a flat structure will break our LDAP groups in DSpace We had been using DC=ILRI to determine whether a user was ILRI or not It looks like we might be able to use OUs now, instead of DCs: $ ldapsearch -x -H ldaps://svcgroot2.cgiarad.org:3269/ -b "dc=cgiarad,dc=org" -D "admigration1@cgiarad.org"
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<hr/>
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||||
<article>
|
||||
<header>
|
||||
|
||||
@ -6,9 +6,52 @@
|
||||
<description>Recent content in Notes on CGSpace Notes</description>
|
||||
<generator>Hugo -- gohugo.io</generator>
|
||||
<language>en-us</language>
|
||||
<lastBuildDate>Mon, 01 Aug 2016 15:53:00 +0300</lastBuildDate>
|
||||
<lastBuildDate>Thu, 01 Sep 2016 15:53:00 +0300</lastBuildDate>
|
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<atom:link href="https://alanorth.github.io/cgspace-notes/tags/notes/index.xml" rel="self" type="application/rss+xml" />
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<item>
|
||||
<title>September, 2016</title>
|
||||
<link>https://alanorth.github.io/cgspace-notes/2016-09/</link>
|
||||
<pubDate>Thu, 01 Sep 2016 15:53:00 +0300</pubDate>
|
||||
|
||||
<guid>https://alanorth.github.io/cgspace-notes/2016-09/</guid>
|
||||
<description>
|
||||
|
||||
<h2 id="2016-09-01">2016-09-01</h2>
|
||||
|
||||
<ul>
|
||||
<li>Discuss helping CCAFS with some batch tagging of ORCID IDs for their authors</li>
|
||||
<li>Discuss how the migration of CGIAR&rsquo;s Active Directory to a flat structure will break our LDAP groups in DSpace</li>
|
||||
<li>We had been using <code>DC=ILRI</code> to determine whether a user was ILRI or not</li>
|
||||
<li>It looks like we might be able to use OUs now, instead of DCs:</li>
|
||||
</ul>
|
||||
|
||||
<pre><code>$ ldapsearch -x -H ldaps://svcgroot2.cgiarad.org:3269/ -b &quot;dc=cgiarad,dc=org&quot; -D &quot;admigration1@cgiarad.org&quot; -W &quot;(sAMAccountName=admigration1)&quot;
|
||||
</code></pre>
|
||||
|
||||
<ul>
|
||||
<li>User who has been migrated to the root vs user still in the hierarchical structure:</li>
|
||||
</ul>
|
||||
|
||||
<pre><code>distinguishedName: CN=Last\, First (ILRI),OU=ILRI Kenya Employees,OU=ILRI Kenya,OU=ILRIHUB,DC=CGIARAD,DC=ORG
|
||||
distinguishedName: CN=Last\, First (ILRI),OU=ILRI Ethiopia Employees,OU=ILRI Ethiopia,DC=ILRI,DC=CGIARAD,DC=ORG
|
||||
</code></pre>
|
||||
|
||||
<ul>
|
||||
<li>Notes for local PostgreSQL database recreation from production snapshot:</li>
|
||||
</ul>
|
||||
|
||||
<pre><code>$ dropdb dspacetest
|
||||
$ createdb -O dspacetest --encoding=UNICODE dspacetest
|
||||
$ psql dspacetest -c 'alter user dspacetest createuser;'
|
||||
$ pg_restore -O -U dspacetest -d dspacetest ~/Downloads/cgspace_2016-09-01.backup
|
||||
$ psql dspacetest -c 'alter user dspacetest nocreateuser;'
|
||||
$ psql -U dspacetest -f ~/src/git/DSpace/dspace/etc/postgres/update-sequences.sql dspacetest -h localhost
|
||||
$ vacuumdb dspacetest
|
||||
</code></pre>
|
||||
</description>
|
||||
</item>
|
||||
|
||||
<item>
|
||||
<title>August, 2016</title>
|
||||
<link>https://alanorth.github.io/cgspace-notes/2016-08/</link>
|
||||
|
||||
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