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Add notes for 2020-05-31
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@ -175,4 +175,54 @@ $ ./add-orcid-identifiers-csv.py -i 2020-05-25-add-orcids.csv -db dspace -u dspa
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- Atmire got back to me about the [Solr CUA issue in the DSpace 6 upgrade](https://tracker.atmire.com/tickets-cgiar-ilri/view-ticket?id=706) and they cannot reproduce the error
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- The next step is for me to migrate DSpace Test (linode26) to DSpace 6 and try to reproduce the error there
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## 2020-05-31
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- Start preparing to migrate DSpace Test (linode26) to the `6_x-dev-atmire-modules` branch
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- Run all system updates and reboot
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- For now I will disable all yearly Solr statistics cores except the current `statistics` one
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- Prepare PostgreSQL with a clean snapshot of CGSpace's DSpace 5.8 database:
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```
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$ sudo su - postgres
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$ dropdb dspacetest
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$ createdb -O dspacetest --encoding=UNICODE dspacetest
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$ psql dspacetest -c 'alter user dspacetest superuser;'
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$ pg_restore -d dspacetest -O --role=dspacetest /tmp/cgspace_2020-05-31.backup
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$ psql dspacetest -c 'alter user dspacetest nosuperuser;'
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# run DSpace 5 version of update-sequences.sql!!!
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$ psql -f /home/dspace/src/git/DSpace/dspace/etc/postgres/update-sequences.sql dspacetest
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$ psql dspacetest -c "DELETE FROM schema_version WHERE version IN ('5.8.2015.12.03.3');"
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$ psql dspacetest -c 'CREATE EXTENSION pgcrypto;'
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$ exit
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```
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- Now switch to the DSpace 6.x branch and start a build:
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```
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$ chrt -i 0 ionice -c2 -n7 nice -n19 mvn -U -Dmirage2.on=true -Dmirage2.deps.included=false package
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...
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[ERROR] Failed to execute goal on project additions: Could not resolve dependencies for project org.dspace.modules:additions:jar:6.3: Failed to collect dependencies at com.atmire:atmire-listings-and-reports-api:jar:6.x-2.10.8-0-SNAPSHOT: Failed to read artifact descriptor for com.atmire:atmire-listings-and-reports-api:jar:6.x-2.10.8-0-SNAPSHOT: Could not transfer artifact com.atmire:atmire-listings-and-reports-api:pom:6.x-2.10.8-0-SNAPSHOT from/to atmire.com-snapshots (https://atmire.com/artifactory/atmire.com-snapshots): Not authorized , ReasonPhrase:Unauthorized. -> [Help 1]
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```
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- Great! I will have to send Atmire a note about this... but for now I can sync over my local `~/.m2` directory and the build completes
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- After the Maven build completed successfully I installed the updated code with Ant (make sure to delete the old spring directory):
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```
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$ cd dspace/target/dspace-installer
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$ rm -rf /blah/dspacetest/config/spring
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$ ant update
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```
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- Database migrations take 10:18.287s during the first startup...
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- perhaps when we do the production CGSpace migration I can do this in advance and tell users not to make any submissions?
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- I had a mistake in my Solr internal URL parameter so DSpace couldn't find it, but once I fixed that DSpace starts up OK!
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- Once the initial Discovery reindexing is completed I started the Solr statistics UUID migration:
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```
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$ export JAVA_OPTS="-Xmx1024m -Dfile.encoding=UTF-8"
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```
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- Experiment a bit with the Python [country-converter](https://pypi.org/project/country-converter/) library as it can convert between different formats (like ISO 3166 and UN m49)
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- We need to eventually find a format we can use for all CGIAR DSpaces...
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<!-- vim: set sw=2 ts=2: -->
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@ -18,7 +18,7 @@ I see that CGSpace (linode18) is still using PostgreSQL JDBC driver version 42.2
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<meta property="og:type" content="article" />
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<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/2020-05/" />
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<meta property="article:published_time" content="2020-05-02T09:52:04+03:00" />
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<meta property="article:modified_time" content="2020-05-29T10:25:41+03:00" />
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<meta property="article:modified_time" content="2020-05-30T18:38:16+03:00" />
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<meta name="twitter:card" content="summary"/>
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<meta name="twitter:title" content="May, 2020"/>
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@ -41,9 +41,9 @@ I see that CGSpace (linode18) is still using PostgreSQL JDBC driver version 42.2
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"@type": "BlogPosting",
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"headline": "May, 2020",
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"url": "https://alanorth.github.io/cgspace-notes/2020-05/",
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"wordCount": "1515",
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"wordCount": "1861",
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"datePublished": "2020-05-02T09:52:04+03:00",
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"dateModified": "2020-05-29T10:25:41+03:00",
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"dateModified": "2020-05-30T18:38:16+03:00",
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"author": {
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"@type": "Person",
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"name": "Alan Orth"
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@ -345,6 +345,57 @@ $ ./add-orcid-identifiers-csv.py -i 2020-05-25-add-orcids.csv -db dspace -u dspa
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</ul>
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</li>
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</ul>
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<h2 id="2020-05-31">2020-05-31</h2>
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<ul>
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<li>Start preparing to migrate DSpace Test (linode26) to the <code>6_x-dev-atmire-modules</code> branch
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<ul>
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<li>Run all system updates and reboot</li>
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<li>For now I will disable all yearly Solr statistics cores except the current <code>statistics</code> one</li>
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<li>Prepare PostgreSQL with a clean snapshot of CGSpace’s DSpace 5.8 database:</li>
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</ul>
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</li>
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</ul>
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<pre><code>$ sudo su - postgres
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$ dropdb dspacetest
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$ createdb -O dspacetest --encoding=UNICODE dspacetest
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$ psql dspacetest -c 'alter user dspacetest superuser;'
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$ pg_restore -d dspacetest -O --role=dspacetest /tmp/cgspace_2020-05-31.backup
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$ psql dspacetest -c 'alter user dspacetest nosuperuser;'
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# run DSpace 5 version of update-sequences.sql!!!
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$ psql -f /home/dspace/src/git/DSpace/dspace/etc/postgres/update-sequences.sql dspacetest
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$ psql dspacetest -c "DELETE FROM schema_version WHERE version IN ('5.8.2015.12.03.3');"
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$ psql dspacetest -c 'CREATE EXTENSION pgcrypto;'
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$ exit
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</code></pre><ul>
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<li>Now switch to the DSpace 6.x branch and start a build:</li>
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</ul>
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<pre><code>$ chrt -i 0 ionice -c2 -n7 nice -n19 mvn -U -Dmirage2.on=true -Dmirage2.deps.included=false package
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...
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[ERROR] Failed to execute goal on project additions: Could not resolve dependencies for project org.dspace.modules:additions:jar:6.3: Failed to collect dependencies at com.atmire:atmire-listings-and-reports-api:jar:6.x-2.10.8-0-SNAPSHOT: Failed to read artifact descriptor for com.atmire:atmire-listings-and-reports-api:jar:6.x-2.10.8-0-SNAPSHOT: Could not transfer artifact com.atmire:atmire-listings-and-reports-api:pom:6.x-2.10.8-0-SNAPSHOT from/to atmire.com-snapshots (https://atmire.com/artifactory/atmire.com-snapshots): Not authorized , ReasonPhrase:Unauthorized. -> [Help 1]
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</code></pre><ul>
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<li>Great! I will have to send Atmire a note about this… but for now I can sync over my local <code>~/.m2</code> directory and the build completes</li>
|
||||
<li>After the Maven build completed successfully I installed the updated code with Ant (make sure to delete the old spring directory):</li>
|
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</ul>
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<pre><code>$ cd dspace/target/dspace-installer
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$ rm -rf /blah/dspacetest/config/spring
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$ ant update
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</code></pre><ul>
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<li>Database migrations take 10:18.287s during the first startup…
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<ul>
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<li>perhaps when we do the production CGSpace migration I can do this in advance and tell users not to make any submissions?</li>
|
||||
</ul>
|
||||
</li>
|
||||
<li>I had a mistake in my Solr internal URL parameter so DSpace couldn’t find it, but once I fixed that DSpace starts up OK!</li>
|
||||
<li>Once the initial Discovery reindexing is completed I started the Solr statistics UUID migration:</li>
|
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</ul>
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<pre><code>$ export JAVA_OPTS="-Xmx1024m -Dfile.encoding=UTF-8"
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</code></pre><ul>
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<li>Experiment a bit with the Python <a href="https://pypi.org/project/country-converter/">country-converter</a> library as it can convert between different formats (like ISO 3166 and UN m49)
|
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<ul>
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<li>We need to eventually find a format we can use for all CGIAR DSpaces…</li>
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</ul>
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</li>
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</ul>
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<!-- raw HTML omitted -->
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@ -9,7 +9,7 @@
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<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
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<meta property="og:type" content="website" />
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<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/" />
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<meta property="og:updated_time" content="2020-05-29T10:25:41+03:00" />
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<meta property="og:updated_time" content="2020-05-30T18:38:16+03:00" />
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<meta name="twitter:card" content="summary"/>
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<meta name="twitter:title" content="Categories"/>
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@ -9,7 +9,7 @@
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<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
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<meta property="og:type" content="website" />
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<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/notes/" />
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<meta property="og:updated_time" content="2020-05-29T10:25:41+03:00" />
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<meta property="og:updated_time" content="2020-05-30T18:38:16+03:00" />
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<meta name="twitter:card" content="summary"/>
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<meta name="twitter:title" content="Notes"/>
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@ -9,7 +9,7 @@
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<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
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<meta property="og:type" content="website" />
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<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/notes/" />
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<meta property="og:updated_time" content="2020-05-29T10:25:41+03:00" />
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<meta property="og:updated_time" content="2020-05-30T18:38:16+03:00" />
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<meta name="twitter:card" content="summary"/>
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<meta name="twitter:title" content="Notes"/>
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@ -9,7 +9,7 @@
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<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
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<meta property="og:type" content="website" />
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<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/notes/" />
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<meta property="og:updated_time" content="2020-05-29T10:25:41+03:00" />
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<meta property="og:updated_time" content="2020-05-30T18:38:16+03:00" />
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<meta name="twitter:card" content="summary"/>
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<meta name="twitter:title" content="Notes"/>
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@ -9,7 +9,7 @@
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<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
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<meta property="og:type" content="website" />
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<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/notes/" />
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<meta property="og:updated_time" content="2020-05-29T10:25:41+03:00" />
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<meta property="og:updated_time" content="2020-05-30T18:38:16+03:00" />
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<meta name="twitter:card" content="summary"/>
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<meta name="twitter:title" content="Notes"/>
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@ -9,7 +9,7 @@
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<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
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<meta property="og:type" content="website" />
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<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/" />
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<meta property="og:updated_time" content="2020-05-29T10:25:41+03:00" />
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<meta property="og:updated_time" content="2020-05-30T18:38:16+03:00" />
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||||
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||||
<meta name="twitter:card" content="summary"/>
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||||
<meta name="twitter:title" content="Categories"/>
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@ -9,7 +9,7 @@
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<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
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<meta property="og:type" content="website" />
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<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/" />
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<meta property="og:updated_time" content="2020-05-29T10:25:41+03:00" />
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<meta property="og:updated_time" content="2020-05-30T18:38:16+03:00" />
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<meta name="twitter:card" content="summary"/>
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<meta name="twitter:title" content="Categories"/>
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@ -9,7 +9,7 @@
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<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
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<meta property="og:type" content="website" />
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<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/" />
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<meta property="og:updated_time" content="2020-05-29T10:25:41+03:00" />
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<meta property="og:updated_time" content="2020-05-30T18:38:16+03:00" />
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<meta name="twitter:card" content="summary"/>
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<meta name="twitter:title" content="Categories"/>
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<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
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<meta property="og:type" content="website" />
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<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/" />
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<meta property="og:updated_time" content="2020-05-29T10:25:41+03:00" />
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<meta property="og:updated_time" content="2020-05-30T18:38:16+03:00" />
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<meta name="twitter:card" content="summary"/>
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||||
<meta name="twitter:title" content="Categories"/>
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<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
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<meta property="og:type" content="website" />
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<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/" />
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<meta property="og:updated_time" content="2020-05-29T10:25:41+03:00" />
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<meta property="og:updated_time" content="2020-05-30T18:38:16+03:00" />
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<meta name="twitter:card" content="summary"/>
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<meta name="twitter:title" content="Categories"/>
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<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
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<meta property="og:type" content="website" />
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<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />
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<meta property="og:updated_time" content="2020-05-29T10:25:41+03:00" />
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<meta property="og:updated_time" content="2020-05-30T18:38:16+03:00" />
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<meta name="twitter:card" content="summary"/>
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<meta name="twitter:title" content="CGSpace Notes"/>
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<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
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<meta property="og:type" content="website" />
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<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />
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<meta property="og:updated_time" content="2020-05-29T10:25:41+03:00" />
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<meta property="og:updated_time" content="2020-05-30T18:38:16+03:00" />
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<meta name="twitter:card" content="summary"/>
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<meta name="twitter:title" content="CGSpace Notes"/>
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<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
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<meta property="og:type" content="website" />
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<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />
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<meta property="og:updated_time" content="2020-05-29T10:25:41+03:00" />
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<meta property="og:updated_time" content="2020-05-30T18:38:16+03:00" />
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<meta name="twitter:card" content="summary"/>
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<meta name="twitter:title" content="CGSpace Notes"/>
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<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
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<meta property="og:type" content="website" />
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<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />
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<meta property="og:updated_time" content="2020-05-29T10:25:41+03:00" />
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<meta property="og:updated_time" content="2020-05-30T18:38:16+03:00" />
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<meta name="twitter:card" content="summary"/>
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<meta name="twitter:title" content="CGSpace Notes"/>
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<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
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<meta property="og:type" content="website" />
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<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />
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<meta property="og:updated_time" content="2020-05-29T10:25:41+03:00" />
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<meta property="og:updated_time" content="2020-05-30T18:38:16+03:00" />
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<meta name="twitter:card" content="summary"/>
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<meta name="twitter:title" content="CGSpace Notes"/>
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<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
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<meta property="og:type" content="website" />
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<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />
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<meta property="og:updated_time" content="2020-05-29T10:25:41+03:00" />
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<meta property="og:updated_time" content="2020-05-30T18:38:16+03:00" />
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<meta name="twitter:card" content="summary"/>
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<meta name="twitter:title" content="CGSpace Notes"/>
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<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
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<meta property="og:type" content="website" />
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<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" />
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<meta property="og:updated_time" content="2020-05-29T10:25:41+03:00" />
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<meta property="og:updated_time" content="2020-05-30T18:38:16+03:00" />
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||||
<meta name="twitter:card" content="summary"/>
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||||
<meta name="twitter:title" content="Posts"/>
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@ -9,7 +9,7 @@
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||||
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
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<meta property="og:type" content="website" />
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||||
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" />
|
||||
<meta property="og:updated_time" content="2020-05-29T10:25:41+03:00" />
|
||||
<meta property="og:updated_time" content="2020-05-30T18:38:16+03:00" />
|
||||
|
||||
<meta name="twitter:card" content="summary"/>
|
||||
<meta name="twitter:title" content="Posts"/>
|
||||
|
||||
@ -9,7 +9,7 @@
|
||||
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
|
||||
<meta property="og:type" content="website" />
|
||||
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" />
|
||||
<meta property="og:updated_time" content="2020-05-29T10:25:41+03:00" />
|
||||
<meta property="og:updated_time" content="2020-05-30T18:38:16+03:00" />
|
||||
|
||||
<meta name="twitter:card" content="summary"/>
|
||||
<meta name="twitter:title" content="Posts"/>
|
||||
|
||||
@ -9,7 +9,7 @@
|
||||
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
|
||||
<meta property="og:type" content="website" />
|
||||
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" />
|
||||
<meta property="og:updated_time" content="2020-05-29T10:25:41+03:00" />
|
||||
<meta property="og:updated_time" content="2020-05-30T18:38:16+03:00" />
|
||||
|
||||
<meta name="twitter:card" content="summary"/>
|
||||
<meta name="twitter:title" content="Posts"/>
|
||||
|
||||
@ -9,7 +9,7 @@
|
||||
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
|
||||
<meta property="og:type" content="website" />
|
||||
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" />
|
||||
<meta property="og:updated_time" content="2020-05-29T10:25:41+03:00" />
|
||||
<meta property="og:updated_time" content="2020-05-30T18:38:16+03:00" />
|
||||
|
||||
<meta name="twitter:card" content="summary"/>
|
||||
<meta name="twitter:title" content="Posts"/>
|
||||
|
||||
@ -9,7 +9,7 @@
|
||||
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
|
||||
<meta property="og:type" content="website" />
|
||||
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" />
|
||||
<meta property="og:updated_time" content="2020-05-29T10:25:41+03:00" />
|
||||
<meta property="og:updated_time" content="2020-05-30T18:38:16+03:00" />
|
||||
|
||||
<meta name="twitter:card" content="summary"/>
|
||||
<meta name="twitter:title" content="Posts"/>
|
||||
|
||||
@ -4,27 +4,27 @@
|
||||
|
||||
<url>
|
||||
<loc>https://alanorth.github.io/cgspace-notes/categories/</loc>
|
||||
<lastmod>2020-05-29T10:25:41+03:00</lastmod>
|
||||
<lastmod>2020-05-30T18:38:16+03:00</lastmod>
|
||||
</url>
|
||||
|
||||
<url>
|
||||
<loc>https://alanorth.github.io/cgspace-notes/</loc>
|
||||
<lastmod>2020-05-29T10:25:41+03:00</lastmod>
|
||||
<lastmod>2020-05-30T18:38:16+03:00</lastmod>
|
||||
</url>
|
||||
|
||||
<url>
|
||||
<loc>https://alanorth.github.io/cgspace-notes/2020-05/</loc>
|
||||
<lastmod>2020-05-29T10:25:41+03:00</lastmod>
|
||||
<lastmod>2020-05-30T18:38:16+03:00</lastmod>
|
||||
</url>
|
||||
|
||||
<url>
|
||||
<loc>https://alanorth.github.io/cgspace-notes/categories/notes/</loc>
|
||||
<lastmod>2020-05-29T10:25:41+03:00</lastmod>
|
||||
<lastmod>2020-05-30T18:38:16+03:00</lastmod>
|
||||
</url>
|
||||
|
||||
<url>
|
||||
<loc>https://alanorth.github.io/cgspace-notes/posts/</loc>
|
||||
<lastmod>2020-05-29T10:25:41+03:00</lastmod>
|
||||
<lastmod>2020-05-30T18:38:16+03:00</lastmod>
|
||||
</url>
|
||||
|
||||
<url>
|
||||
|
||||
Loading…
Reference in New Issue
Block a user