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https://github.com/alanorth/cgspace-notes.git
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Add 2021-11 and regenerate docs
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<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
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<meta property="og:type" content="website" />
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<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" />
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<meta property="og:updated_time" content="2021-10-28T18:08:13+03:00" />
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<meta property="og:updated_time" content="2021-11-01T10:48:13+02:00" />
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@ -31,7 +31,7 @@
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"@type": "Person",
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"name": "Alan Orth"
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},
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"dateModified": "2021-09-01T09:14:07+03:00",
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"dateModified": "2021-11-01T11:14:07+03:00",
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"keywords": "notes, migration, notes",
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"description":"Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
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}
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@ -96,6 +96,62 @@
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<article class="blog-post">
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<header>
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<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2018-09/">September, 2018</a></h2>
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<p class="blog-post-meta"><time datetime="2018-09-02T09:55:54+03:00">Sun Sep 02, 2018</time> by Alan Orth in
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<span class="fas fa-folder" aria-hidden="true"></span> <a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
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</p>
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</header>
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<h2 id="2018-09-02">2018-09-02</h2>
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<ul>
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<li>New <a href="https://jdbc.postgresql.org/documentation/changelog.html#version_42.2.5">PostgreSQL JDBC driver version 42.2.5</a></li>
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<li>I’ll update the DSpace role in our <a href="https://github.com/ilri/rmg-ansible-public">Ansible infrastructure playbooks</a> and run the updated playbooks on CGSpace and DSpace Test</li>
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<li>Also, I’ll re-run the <code>postgresql</code> tasks because the custom PostgreSQL variables are dynamic according to the system’s RAM, and we never re-ran them after migrating to larger Linodes last month</li>
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<li>I’m testing the new DSpace 5.8 branch in my Ubuntu 18.04 environment and I’m getting those autowire errors in Tomcat 8.5.30 again:</li>
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</ul>
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<a href='https://alanorth.github.io/cgspace-notes/2018-09/'>Read more →</a>
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</article>
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<article class="blog-post">
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<header>
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<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2018-08/">August, 2018</a></h2>
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<p class="blog-post-meta"><time datetime="2018-08-01T11:52:54+03:00">Wed Aug 01, 2018</time> by Alan Orth in
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<span class="fas fa-folder" aria-hidden="true"></span> <a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
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</p>
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</header>
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<h2 id="2018-08-01">2018-08-01</h2>
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<ul>
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<li>DSpace Test had crashed at some point yesterday morning and I see the following in <code>dmesg</code>:</li>
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</ul>
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<pre tabindex="0"><code>[Tue Jul 31 00:00:41 2018] Out of memory: Kill process 1394 (java) score 668 or sacrifice child
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[Tue Jul 31 00:00:41 2018] Killed process 1394 (java) total-vm:15601860kB, anon-rss:5355528kB, file-rss:0kB, shmem-rss:0kB
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[Tue Jul 31 00:00:41 2018] oom_reaper: reaped process 1394 (java), now anon-rss:0kB, file-rss:0kB, shmem-rss:0kB
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</code></pre><ul>
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<li>Judging from the time of the crash it was probably related to the Discovery indexing that starts at midnight</li>
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<li>From the DSpace log I see that eventually Solr stopped responding, so I guess the <code>java</code> process that was OOM killed above was Tomcat’s</li>
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<li>I’m not sure why Tomcat didn’t crash with an OutOfMemoryError…</li>
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<li>Anyways, perhaps I should increase the JVM heap from 5120m to 6144m like we did a few months ago when we tried to run the whole CGSpace Solr core</li>
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<li>The server only has 8GB of RAM so we’ll eventually need to upgrade to a larger one because we’ll start starving the OS, PostgreSQL, and command line batch processes</li>
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<li>I ran all system updates on DSpace Test and rebooted it</li>
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</ul>
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<a href='https://alanorth.github.io/cgspace-notes/2018-08/'>Read more →</a>
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</article>
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<article class="blog-post">
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<header>
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<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2018-07/">July, 2018</a></h2>
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@ -363,65 +419,6 @@ dspace.log.2018-01-02:34
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<article class="blog-post">
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<header>
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<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2017-11/">November, 2017</a></h2>
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<p class="blog-post-meta"><time datetime="2017-11-02T09:37:54+02:00">Thu Nov 02, 2017</time> by Alan Orth in
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<span class="fas fa-folder" aria-hidden="true"></span> <a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
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</p>
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</header>
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<h2 id="2017-11-01">2017-11-01</h2>
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<ul>
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<li>The CORE developers responded to say they are looking into their bot not respecting our robots.txt</li>
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</ul>
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<h2 id="2017-11-02">2017-11-02</h2>
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<ul>
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<li>Today there have been no hits by CORE and no alerts from Linode (coincidence?)</li>
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</ul>
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<pre tabindex="0"><code># grep -c "CORE" /var/log/nginx/access.log
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0
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</code></pre><ul>
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<li>Generate list of authors on CGSpace for Peter to go through and correct:</li>
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</ul>
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<pre tabindex="0"><code>dspace=# \copy (select distinct text_value, count(*) as count from metadatavalue where metadata_field_id = (select metadata_field_id from metadatafieldregistry where element = 'contributor' and qualifier = 'author') AND resource_type_id = 2 group by text_value order by count desc) to /tmp/authors.csv with csv;
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COPY 54701
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</code></pre>
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<a href='https://alanorth.github.io/cgspace-notes/2017-11/'>Read more →</a>
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</article>
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<article class="blog-post">
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<header>
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<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2017-10/">October, 2017</a></h2>
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<p class="blog-post-meta"><time datetime="2017-10-01T08:07:54+03:00">Sun Oct 01, 2017</time> by Alan Orth in
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<span class="fas fa-folder" aria-hidden="true"></span> <a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
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</p>
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</header>
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<h2 id="2017-10-01">2017-10-01</h2>
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<ul>
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<li>Peter emailed to point out that many items in the <a href="https://cgspace.cgiar.org/handle/10568/2703">ILRI archive collection</a> have multiple handles:</li>
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</ul>
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<pre tabindex="0"><code>http://hdl.handle.net/10568/78495||http://hdl.handle.net/10568/79336
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</code></pre><ul>
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<li>There appears to be a pattern but I’ll have to look a bit closer and try to clean them up automatically, either in SQL or in OpenRefine</li>
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<li>Add Katherine Lutz to the groups for content submission and edit steps of the CGIAR System collections</li>
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</ul>
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<a href='https://alanorth.github.io/cgspace-notes/2017-10/'>Read more →</a>
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</article>
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<nav class="blog-pagination">
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<a class="btn btn-outline-primary" href="/cgspace-notes/posts/page/4/" rel="prev" role="button">Previous page</a>
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@ -446,16 +443,16 @@ COPY 54701
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<ol class="list-unstyled">
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<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
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<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
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<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
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<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
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<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
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<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
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<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
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</ol>
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</section>
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