mirror of
https://github.com/alanorth/cgspace-notes.git
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Add 2021-11 and regenerate docs
This commit is contained in:
@ -10,7 +10,7 @@
|
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<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
|
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<meta property="og:type" content="website" />
|
||||
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />
|
||||
<meta property="og:updated_time" content="2021-10-28T18:08:13+03:00" />
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<meta property="og:updated_time" content="2021-11-01T10:48:13+02:00" />
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|
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|
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|
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@ -31,7 +31,7 @@
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"@type": "Person",
|
||||
"name": "Alan Orth"
|
||||
},
|
||||
"dateModified": "2021-09-01T09:14:07+03:00",
|
||||
"dateModified": "2021-11-01T11:14:07+03:00",
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"keywords": "notes, migration, notes",
|
||||
"description":"Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
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||||
}
|
||||
@ -96,6 +96,79 @@
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<article class="blog-post">
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<header>
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<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2021-02/">February, 2021</a></h2>
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<p class="blog-post-meta"><time datetime="2021-02-01T10:13:54+02:00">Mon Feb 01, 2021</time> by Alan Orth in
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<span class="fas fa-folder" aria-hidden="true"></span> <a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
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</p>
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</header>
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<h2 id="2021-02-01">2021-02-01</h2>
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<ul>
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||||
<li>Abenet said that CIP found more duplicate records in their export from AReS
|
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<ul>
|
||||
<li>I re-opened <a href="https://github.com/ilri/OpenRXV/issues/67">the issue</a> on OpenRXV where we had previously noticed this</li>
|
||||
<li>The shared link where the duplicates are is here: <a href="https://cgspace.cgiar.org/explorer/shared/heEOz3YBnXdK69bR2ra6">https://cgspace.cgiar.org/explorer/shared/heEOz3YBnXdK69bR2ra6</a></li>
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</ul>
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</li>
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<li>I had a call with CodeObia to discuss the work on OpenRXV</li>
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<li>Check the results of the AReS harvesting from last night:</li>
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</ul>
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<pre tabindex="0"><code class="language-console" data-lang="console">$ curl -s 'http://localhost:9200/openrxv-items-temp/_count?q=*&pretty'
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{
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"count" : 100875,
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"_shards" : {
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"total" : 1,
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"successful" : 1,
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"skipped" : 0,
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"failed" : 0
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}
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}
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</code></pre>
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<a href='https://alanorth.github.io/cgspace-notes/2021-02/'>Read more →</a>
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</article>
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<article class="blog-post">
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<header>
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<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2021-01/">January, 2021</a></h2>
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<p class="blog-post-meta"><time datetime="2021-01-03T10:13:54+02:00">Sun Jan 03, 2021</time> by Alan Orth in
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<span class="fas fa-folder" aria-hidden="true"></span> <a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
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</p>
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</header>
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<h2 id="2021-01-03">2021-01-03</h2>
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<ul>
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<li>Peter notified me that some filters on AReS were broken again
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<ul>
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<li>It’s the same issue with the field names getting <code>.keyword</code> appended to the end that I already <a href="https://github.com/ilri/OpenRXV/issues/66">filed an issue on OpenRXV about last month</a></li>
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<li>I fixed the broken filters (careful to not edit any others, lest they break too!)</li>
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</ul>
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</li>
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<li>Fix an issue with start page number for the DSpace REST API and statistics API in OpenRXV
|
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<ul>
|
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<li>The start page had been “1” in the UI, but in the backend they were doing some gymnastics to adjust to the zero-based offset/limit/page of the DSpace REST API and the statistics API</li>
|
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<li>I adjusted it to default to 0 and added a note to the admin screen</li>
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<li>I realized that this issue was actually causing the first page of 100 statistics to be missing…</li>
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<li>For example, <a href="https://cgspace.cgiar.org/handle/10568/66839">this item</a> has 51 views on CGSpace, but 0 on AReS</li>
|
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</ul>
|
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</li>
|
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</ul>
|
||||
<a href='https://alanorth.github.io/cgspace-notes/2021-01/'>Read more →</a>
|
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</article>
|
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|
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<article class="blog-post">
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<header>
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<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2020-12/">December, 2020</a></h2>
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@ -313,65 +386,6 @@
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<article class="blog-post">
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<header>
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<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2020-05/">May, 2020</a></h2>
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<p class="blog-post-meta"><time datetime="2020-05-02T09:52:04+03:00">Sat May 02, 2020</time> by Alan Orth in
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<span class="fas fa-folder" aria-hidden="true"></span> <a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
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</p>
|
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</header>
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<h2 id="2020-05-02">2020-05-02</h2>
|
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<ul>
|
||||
<li>Peter said that CTA is having problems submitting an item to CGSpace
|
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<ul>
|
||||
<li>Looking at the PostgreSQL stats it seems to be the same issue that Tezira was having last week, as I see the number of connections in ‘idle in transaction’ and ‘waiting for lock’ state are increasing again</li>
|
||||
<li>I see that CGSpace (linode18) is still using PostgreSQL JDBC driver version 42.2.11, and there were some bugs related to transactions fixed in 42.2.12 (which I had updated in the Ansible playbooks, but not deployed yet)</li>
|
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</ul>
|
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</li>
|
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</ul>
|
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<a href='https://alanorth.github.io/cgspace-notes/2020-05/'>Read more →</a>
|
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</article>
|
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|
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<article class="blog-post">
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<header>
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<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2020-04/">April, 2020</a></h2>
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<p class="blog-post-meta"><time datetime="2020-04-02T10:53:24+03:00">Thu Apr 02, 2020</time> by Alan Orth in
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<span class="fas fa-folder" aria-hidden="true"></span> <a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
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</p>
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</header>
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<h2 id="2020-04-02">2020-04-02</h2>
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<ul>
|
||||
<li>Maria asked me to update Charles Staver’s ORCID iD in the submission template and on CGSpace, as his name was lower case before, and now he has corrected it
|
||||
<ul>
|
||||
<li>I updated the fifty-eight existing items on CGSpace</li>
|
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</ul>
|
||||
</li>
|
||||
<li>Looking into the items Udana had asked about last week that were missing Altmetric donuts:
|
||||
<ul>
|
||||
<li><a href="https://hdl.handle.net/10568/103225">The first</a> is still missing its DOI, so I added it and <a href="https://twitter.com/mralanorth/status/1245632619661766657">tweeted its handle</a> (after a few hours there was a donut with score 222)</li>
|
||||
<li><a href="https://hdl.handle.net/10568/106899">The second item</a> now has a donut with score 2 since I <a href="https://twitter.com/mralanorth/status/1243158045540134913">tweeted its handle</a> last week</li>
|
||||
<li><a href="https://hdl.handle.net/10568/107258">The third item</a> now has a donut with score 1 since I <a href="https://twitter.com/mralanorth/status/1243158786392625153">tweeted it</a> last week</li>
|
||||
</ul>
|
||||
</li>
|
||||
<li>On the same note, the <a href="https://hdl.handle.net/10568/106573">one item</a> Abenet pointed out last week now has a donut with score of 104 after I <a href="https://twitter.com/mralanorth/status/1243163710241345536">tweeted it</a> last week</li>
|
||||
</ul>
|
||||
<a href='https://alanorth.github.io/cgspace-notes/2020-04/'>Read more →</a>
|
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</article>
|
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<nav class="blog-pagination">
|
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<a class="btn btn-outline-primary" href="/cgspace-notes/" rel="prev" role="button">Previous page</a>
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@ -396,16 +410,16 @@
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<ol class="list-unstyled">
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<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
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<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
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<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
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<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
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<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
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<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
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<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
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</ol>
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</section>
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@ -10,7 +10,7 @@
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<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
|
||||
<meta property="og:type" content="website" />
|
||||
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />
|
||||
<meta property="og:updated_time" content="2021-10-28T18:08:13+03:00" />
|
||||
<meta property="og:updated_time" content="2021-11-01T10:48:13+02:00" />
|
||||
|
||||
|
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@ -31,7 +31,7 @@
|
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"@type": "Person",
|
||||
"name": "Alan Orth"
|
||||
},
|
||||
"dateModified": "2021-09-01T09:14:07+03:00",
|
||||
"dateModified": "2021-11-01T11:14:07+03:00",
|
||||
"keywords": "notes, migration, notes",
|
||||
"description":"Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
|
||||
}
|
||||
@ -96,6 +96,65 @@
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|
||||
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||||
|
||||
<article class="blog-post">
|
||||
<header>
|
||||
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2020-05/">May, 2020</a></h2>
|
||||
<p class="blog-post-meta"><time datetime="2020-05-02T09:52:04+03:00">Sat May 02, 2020</time> by Alan Orth in
|
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<span class="fas fa-folder" aria-hidden="true"></span> <a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
|
||||
|
||||
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||||
</p>
|
||||
</header>
|
||||
<h2 id="2020-05-02">2020-05-02</h2>
|
||||
<ul>
|
||||
<li>Peter said that CTA is having problems submitting an item to CGSpace
|
||||
<ul>
|
||||
<li>Looking at the PostgreSQL stats it seems to be the same issue that Tezira was having last week, as I see the number of connections in ‘idle in transaction’ and ‘waiting for lock’ state are increasing again</li>
|
||||
<li>I see that CGSpace (linode18) is still using PostgreSQL JDBC driver version 42.2.11, and there were some bugs related to transactions fixed in 42.2.12 (which I had updated in the Ansible playbooks, but not deployed yet)</li>
|
||||
</ul>
|
||||
</li>
|
||||
</ul>
|
||||
<a href='https://alanorth.github.io/cgspace-notes/2020-05/'>Read more →</a>
|
||||
</article>
|
||||
|
||||
|
||||
|
||||
|
||||
|
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|
||||
<article class="blog-post">
|
||||
<header>
|
||||
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2020-04/">April, 2020</a></h2>
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<p class="blog-post-meta"><time datetime="2020-04-02T10:53:24+03:00">Thu Apr 02, 2020</time> by Alan Orth in
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<span class="fas fa-folder" aria-hidden="true"></span> <a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
|
||||
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||||
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</p>
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</header>
|
||||
<h2 id="2020-04-02">2020-04-02</h2>
|
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<ul>
|
||||
<li>Maria asked me to update Charles Staver’s ORCID iD in the submission template and on CGSpace, as his name was lower case before, and now he has corrected it
|
||||
<ul>
|
||||
<li>I updated the fifty-eight existing items on CGSpace</li>
|
||||
</ul>
|
||||
</li>
|
||||
<li>Looking into the items Udana had asked about last week that were missing Altmetric donuts:
|
||||
<ul>
|
||||
<li><a href="https://hdl.handle.net/10568/103225">The first</a> is still missing its DOI, so I added it and <a href="https://twitter.com/mralanorth/status/1245632619661766657">tweeted its handle</a> (after a few hours there was a donut with score 222)</li>
|
||||
<li><a href="https://hdl.handle.net/10568/106899">The second item</a> now has a donut with score 2 since I <a href="https://twitter.com/mralanorth/status/1243158045540134913">tweeted its handle</a> last week</li>
|
||||
<li><a href="https://hdl.handle.net/10568/107258">The third item</a> now has a donut with score 1 since I <a href="https://twitter.com/mralanorth/status/1243158786392625153">tweeted it</a> last week</li>
|
||||
</ul>
|
||||
</li>
|
||||
<li>On the same note, the <a href="https://hdl.handle.net/10568/106573">one item</a> Abenet pointed out last week now has a donut with score of 104 after I <a href="https://twitter.com/mralanorth/status/1243163710241345536">tweeted it</a> last week</li>
|
||||
</ul>
|
||||
<a href='https://alanorth.github.io/cgspace-notes/2020-04/'>Read more →</a>
|
||||
</article>
|
||||
|
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|
||||
|
||||
|
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<article class="blog-post">
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<header>
|
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<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2020-03/">March, 2020</a></h2>
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@ -355,60 +414,6 @@
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<article class="blog-post">
|
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<header>
|
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<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2019-07/">July, 2019</a></h2>
|
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<p class="blog-post-meta"><time datetime="2019-07-01T12:13:51+03:00">Mon Jul 01, 2019</time> by Alan Orth in
|
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<span class="fas fa-folder" aria-hidden="true"></span> <a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
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</p>
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</header>
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<h2 id="2019-07-01">2019-07-01</h2>
|
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<ul>
|
||||
<li>Create an “AfricaRice books and book chapters” collection on CGSpace for AfricaRice</li>
|
||||
<li>Last month Sisay asked why the following “most popular” statistics link for a range of months in 2018 works for the CIAT community on DSpace Test, but not on CGSpace:
|
||||
<ul>
|
||||
<li><a href="https://dspacetest.cgiar.org/handle/10568/35697/most-popular/item#simplefilter=custom&time_filter_end_date=01%2F12%2F2018">DSpace Test</a></li>
|
||||
<li><a href="https://cgspace.cgiar.org/handle/10568/35697/most-popular/item#simplefilter=custom&time_filter_end_date=01%2F12%2F2018">CGSpace</a></li>
|
||||
</ul>
|
||||
</li>
|
||||
<li>Abenet had another similar issue a few days ago when trying to find the stats for 2018 in the RTB community</li>
|
||||
</ul>
|
||||
<a href='https://alanorth.github.io/cgspace-notes/2019-07/'>Read more →</a>
|
||||
</article>
|
||||
|
||||
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||||
|
||||
|
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|
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<article class="blog-post">
|
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<header>
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<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2019-06/">June, 2019</a></h2>
|
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<p class="blog-post-meta"><time datetime="2019-06-02T10:57:51+03:00">Sun Jun 02, 2019</time> by Alan Orth in
|
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<span class="fas fa-folder" aria-hidden="true"></span> <a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
|
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</p>
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</header>
|
||||
<h2 id="2019-06-02">2019-06-02</h2>
|
||||
<ul>
|
||||
<li>Merge the <a href="https://github.com/ilri/DSpace/pull/425">Solr filterCache</a> and <a href="https://github.com/ilri/DSpace/pull/426">XMLUI ISI journal</a> changes to the <code>5_x-prod</code> branch and deploy on CGSpace</li>
|
||||
<li>Run system updates on CGSpace (linode18) and reboot it</li>
|
||||
</ul>
|
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<h2 id="2019-06-03">2019-06-03</h2>
|
||||
<ul>
|
||||
<li>Skype with Marie-Angélique and Abenet about <a href="https://agriculturalsemantics.github.io/cg-core/cgcore.html">CG Core v2</a></li>
|
||||
</ul>
|
||||
<a href='https://alanorth.github.io/cgspace-notes/2019-06/'>Read more →</a>
|
||||
</article>
|
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|
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|
||||
|
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<nav class="blog-pagination">
|
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||||
<a class="btn btn-outline-primary" href="/cgspace-notes/page/2/" rel="prev" role="button">Previous page</a>
|
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@ -433,16 +438,16 @@
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<ol class="list-unstyled">
|
||||
|
||||
|
||||
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
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<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
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|
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<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
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|
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<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
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<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
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<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
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<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
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</ol>
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</section>
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@ -10,7 +10,7 @@
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||||
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
|
||||
<meta property="og:type" content="website" />
|
||||
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />
|
||||
<meta property="og:updated_time" content="2021-10-28T18:08:13+03:00" />
|
||||
<meta property="og:updated_time" content="2021-11-01T10:48:13+02:00" />
|
||||
|
||||
|
||||
|
||||
@ -31,7 +31,7 @@
|
||||
"@type": "Person",
|
||||
"name": "Alan Orth"
|
||||
},
|
||||
"dateModified": "2021-09-01T09:14:07+03:00",
|
||||
"dateModified": "2021-11-01T11:14:07+03:00",
|
||||
"keywords": "notes, migration, notes",
|
||||
"description":"Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
|
||||
}
|
||||
@ -96,6 +96,60 @@
|
||||
|
||||
|
||||
|
||||
<article class="blog-post">
|
||||
<header>
|
||||
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2019-07/">July, 2019</a></h2>
|
||||
<p class="blog-post-meta"><time datetime="2019-07-01T12:13:51+03:00">Mon Jul 01, 2019</time> by Alan Orth in
|
||||
<span class="fas fa-folder" aria-hidden="true"></span> <a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
|
||||
|
||||
|
||||
</p>
|
||||
</header>
|
||||
<h2 id="2019-07-01">2019-07-01</h2>
|
||||
<ul>
|
||||
<li>Create an “AfricaRice books and book chapters” collection on CGSpace for AfricaRice</li>
|
||||
<li>Last month Sisay asked why the following “most popular” statistics link for a range of months in 2018 works for the CIAT community on DSpace Test, but not on CGSpace:
|
||||
<ul>
|
||||
<li><a href="https://dspacetest.cgiar.org/handle/10568/35697/most-popular/item#simplefilter=custom&time_filter_end_date=01%2F12%2F2018">DSpace Test</a></li>
|
||||
<li><a href="https://cgspace.cgiar.org/handle/10568/35697/most-popular/item#simplefilter=custom&time_filter_end_date=01%2F12%2F2018">CGSpace</a></li>
|
||||
</ul>
|
||||
</li>
|
||||
<li>Abenet had another similar issue a few days ago when trying to find the stats for 2018 in the RTB community</li>
|
||||
</ul>
|
||||
<a href='https://alanorth.github.io/cgspace-notes/2019-07/'>Read more →</a>
|
||||
</article>
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
<article class="blog-post">
|
||||
<header>
|
||||
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2019-06/">June, 2019</a></h2>
|
||||
<p class="blog-post-meta"><time datetime="2019-06-02T10:57:51+03:00">Sun Jun 02, 2019</time> by Alan Orth in
|
||||
<span class="fas fa-folder" aria-hidden="true"></span> <a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
|
||||
|
||||
|
||||
</p>
|
||||
</header>
|
||||
<h2 id="2019-06-02">2019-06-02</h2>
|
||||
<ul>
|
||||
<li>Merge the <a href="https://github.com/ilri/DSpace/pull/425">Solr filterCache</a> and <a href="https://github.com/ilri/DSpace/pull/426">XMLUI ISI journal</a> changes to the <code>5_x-prod</code> branch and deploy on CGSpace</li>
|
||||
<li>Run system updates on CGSpace (linode18) and reboot it</li>
|
||||
</ul>
|
||||
<h2 id="2019-06-03">2019-06-03</h2>
|
||||
<ul>
|
||||
<li>Skype with Marie-Angélique and Abenet about <a href="https://agriculturalsemantics.github.io/cg-core/cgcore.html">CG Core v2</a></li>
|
||||
</ul>
|
||||
<a href='https://alanorth.github.io/cgspace-notes/2019-06/'>Read more →</a>
|
||||
</article>
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
<article class="blog-post">
|
||||
<header>
|
||||
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2019-05/">May, 2019</a></h2>
|
||||
@ -356,62 +410,6 @@ sys 0m1.979s
|
||||
|
||||
|
||||
|
||||
|
||||
<article class="blog-post">
|
||||
<header>
|
||||
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2018-09/">September, 2018</a></h2>
|
||||
<p class="blog-post-meta"><time datetime="2018-09-02T09:55:54+03:00">Sun Sep 02, 2018</time> by Alan Orth in
|
||||
<span class="fas fa-folder" aria-hidden="true"></span> <a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
|
||||
|
||||
|
||||
</p>
|
||||
</header>
|
||||
<h2 id="2018-09-02">2018-09-02</h2>
|
||||
<ul>
|
||||
<li>New <a href="https://jdbc.postgresql.org/documentation/changelog.html#version_42.2.5">PostgreSQL JDBC driver version 42.2.5</a></li>
|
||||
<li>I’ll update the DSpace role in our <a href="https://github.com/ilri/rmg-ansible-public">Ansible infrastructure playbooks</a> and run the updated playbooks on CGSpace and DSpace Test</li>
|
||||
<li>Also, I’ll re-run the <code>postgresql</code> tasks because the custom PostgreSQL variables are dynamic according to the system’s RAM, and we never re-ran them after migrating to larger Linodes last month</li>
|
||||
<li>I’m testing the new DSpace 5.8 branch in my Ubuntu 18.04 environment and I’m getting those autowire errors in Tomcat 8.5.30 again:</li>
|
||||
</ul>
|
||||
<a href='https://alanorth.github.io/cgspace-notes/2018-09/'>Read more →</a>
|
||||
</article>
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
<article class="blog-post">
|
||||
<header>
|
||||
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2018-08/">August, 2018</a></h2>
|
||||
<p class="blog-post-meta"><time datetime="2018-08-01T11:52:54+03:00">Wed Aug 01, 2018</time> by Alan Orth in
|
||||
<span class="fas fa-folder" aria-hidden="true"></span> <a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
|
||||
|
||||
|
||||
</p>
|
||||
</header>
|
||||
<h2 id="2018-08-01">2018-08-01</h2>
|
||||
<ul>
|
||||
<li>DSpace Test had crashed at some point yesterday morning and I see the following in <code>dmesg</code>:</li>
|
||||
</ul>
|
||||
<pre tabindex="0"><code>[Tue Jul 31 00:00:41 2018] Out of memory: Kill process 1394 (java) score 668 or sacrifice child
|
||||
[Tue Jul 31 00:00:41 2018] Killed process 1394 (java) total-vm:15601860kB, anon-rss:5355528kB, file-rss:0kB, shmem-rss:0kB
|
||||
[Tue Jul 31 00:00:41 2018] oom_reaper: reaped process 1394 (java), now anon-rss:0kB, file-rss:0kB, shmem-rss:0kB
|
||||
</code></pre><ul>
|
||||
<li>Judging from the time of the crash it was probably related to the Discovery indexing that starts at midnight</li>
|
||||
<li>From the DSpace log I see that eventually Solr stopped responding, so I guess the <code>java</code> process that was OOM killed above was Tomcat’s</li>
|
||||
<li>I’m not sure why Tomcat didn’t crash with an OutOfMemoryError…</li>
|
||||
<li>Anyways, perhaps I should increase the JVM heap from 5120m to 6144m like we did a few months ago when we tried to run the whole CGSpace Solr core</li>
|
||||
<li>The server only has 8GB of RAM so we’ll eventually need to upgrade to a larger one because we’ll start starving the OS, PostgreSQL, and command line batch processes</li>
|
||||
<li>I ran all system updates on DSpace Test and rebooted it</li>
|
||||
</ul>
|
||||
<a href='https://alanorth.github.io/cgspace-notes/2018-08/'>Read more →</a>
|
||||
</article>
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
<nav class="blog-pagination">
|
||||
|
||||
<a class="btn btn-outline-primary" href="/cgspace-notes/page/3/" rel="prev" role="button">Previous page</a>
|
||||
@ -436,16 +434,16 @@ sys 0m1.979s
|
||||
<ol class="list-unstyled">
|
||||
|
||||
|
||||
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
|
||||
|
||||
</ol>
|
||||
</section>
|
||||
|
||||
|
||||
@ -10,7 +10,7 @@
|
||||
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
|
||||
<meta property="og:type" content="website" />
|
||||
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />
|
||||
<meta property="og:updated_time" content="2021-10-28T18:08:13+03:00" />
|
||||
<meta property="og:updated_time" content="2021-11-01T10:48:13+02:00" />
|
||||
|
||||
|
||||
|
||||
@ -31,7 +31,7 @@
|
||||
"@type": "Person",
|
||||
"name": "Alan Orth"
|
||||
},
|
||||
"dateModified": "2021-09-01T09:14:07+03:00",
|
||||
"dateModified": "2021-11-01T11:14:07+03:00",
|
||||
"keywords": "notes, migration, notes",
|
||||
"description":"Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
|
||||
}
|
||||
@ -96,6 +96,62 @@
|
||||
|
||||
|
||||
|
||||
<article class="blog-post">
|
||||
<header>
|
||||
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2018-09/">September, 2018</a></h2>
|
||||
<p class="blog-post-meta"><time datetime="2018-09-02T09:55:54+03:00">Sun Sep 02, 2018</time> by Alan Orth in
|
||||
<span class="fas fa-folder" aria-hidden="true"></span> <a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
|
||||
|
||||
|
||||
</p>
|
||||
</header>
|
||||
<h2 id="2018-09-02">2018-09-02</h2>
|
||||
<ul>
|
||||
<li>New <a href="https://jdbc.postgresql.org/documentation/changelog.html#version_42.2.5">PostgreSQL JDBC driver version 42.2.5</a></li>
|
||||
<li>I’ll update the DSpace role in our <a href="https://github.com/ilri/rmg-ansible-public">Ansible infrastructure playbooks</a> and run the updated playbooks on CGSpace and DSpace Test</li>
|
||||
<li>Also, I’ll re-run the <code>postgresql</code> tasks because the custom PostgreSQL variables are dynamic according to the system’s RAM, and we never re-ran them after migrating to larger Linodes last month</li>
|
||||
<li>I’m testing the new DSpace 5.8 branch in my Ubuntu 18.04 environment and I’m getting those autowire errors in Tomcat 8.5.30 again:</li>
|
||||
</ul>
|
||||
<a href='https://alanorth.github.io/cgspace-notes/2018-09/'>Read more →</a>
|
||||
</article>
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
<article class="blog-post">
|
||||
<header>
|
||||
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2018-08/">August, 2018</a></h2>
|
||||
<p class="blog-post-meta"><time datetime="2018-08-01T11:52:54+03:00">Wed Aug 01, 2018</time> by Alan Orth in
|
||||
<span class="fas fa-folder" aria-hidden="true"></span> <a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
|
||||
|
||||
|
||||
</p>
|
||||
</header>
|
||||
<h2 id="2018-08-01">2018-08-01</h2>
|
||||
<ul>
|
||||
<li>DSpace Test had crashed at some point yesterday morning and I see the following in <code>dmesg</code>:</li>
|
||||
</ul>
|
||||
<pre tabindex="0"><code>[Tue Jul 31 00:00:41 2018] Out of memory: Kill process 1394 (java) score 668 or sacrifice child
|
||||
[Tue Jul 31 00:00:41 2018] Killed process 1394 (java) total-vm:15601860kB, anon-rss:5355528kB, file-rss:0kB, shmem-rss:0kB
|
||||
[Tue Jul 31 00:00:41 2018] oom_reaper: reaped process 1394 (java), now anon-rss:0kB, file-rss:0kB, shmem-rss:0kB
|
||||
</code></pre><ul>
|
||||
<li>Judging from the time of the crash it was probably related to the Discovery indexing that starts at midnight</li>
|
||||
<li>From the DSpace log I see that eventually Solr stopped responding, so I guess the <code>java</code> process that was OOM killed above was Tomcat’s</li>
|
||||
<li>I’m not sure why Tomcat didn’t crash with an OutOfMemoryError…</li>
|
||||
<li>Anyways, perhaps I should increase the JVM heap from 5120m to 6144m like we did a few months ago when we tried to run the whole CGSpace Solr core</li>
|
||||
<li>The server only has 8GB of RAM so we’ll eventually need to upgrade to a larger one because we’ll start starving the OS, PostgreSQL, and command line batch processes</li>
|
||||
<li>I ran all system updates on DSpace Test and rebooted it</li>
|
||||
</ul>
|
||||
<a href='https://alanorth.github.io/cgspace-notes/2018-08/'>Read more →</a>
|
||||
</article>
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
<article class="blog-post">
|
||||
<header>
|
||||
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2018-07/">July, 2018</a></h2>
|
||||
@ -363,65 +419,6 @@ dspace.log.2018-01-02:34
|
||||
|
||||
|
||||
|
||||
|
||||
<article class="blog-post">
|
||||
<header>
|
||||
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2017-11/">November, 2017</a></h2>
|
||||
<p class="blog-post-meta"><time datetime="2017-11-02T09:37:54+02:00">Thu Nov 02, 2017</time> by Alan Orth in
|
||||
<span class="fas fa-folder" aria-hidden="true"></span> <a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
|
||||
|
||||
|
||||
</p>
|
||||
</header>
|
||||
<h2 id="2017-11-01">2017-11-01</h2>
|
||||
<ul>
|
||||
<li>The CORE developers responded to say they are looking into their bot not respecting our robots.txt</li>
|
||||
</ul>
|
||||
<h2 id="2017-11-02">2017-11-02</h2>
|
||||
<ul>
|
||||
<li>Today there have been no hits by CORE and no alerts from Linode (coincidence?)</li>
|
||||
</ul>
|
||||
<pre tabindex="0"><code># grep -c "CORE" /var/log/nginx/access.log
|
||||
0
|
||||
</code></pre><ul>
|
||||
<li>Generate list of authors on CGSpace for Peter to go through and correct:</li>
|
||||
</ul>
|
||||
<pre tabindex="0"><code>dspace=# \copy (select distinct text_value, count(*) as count from metadatavalue where metadata_field_id = (select metadata_field_id from metadatafieldregistry where element = 'contributor' and qualifier = 'author') AND resource_type_id = 2 group by text_value order by count desc) to /tmp/authors.csv with csv;
|
||||
COPY 54701
|
||||
</code></pre>
|
||||
<a href='https://alanorth.github.io/cgspace-notes/2017-11/'>Read more →</a>
|
||||
</article>
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
<article class="blog-post">
|
||||
<header>
|
||||
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2017-10/">October, 2017</a></h2>
|
||||
<p class="blog-post-meta"><time datetime="2017-10-01T08:07:54+03:00">Sun Oct 01, 2017</time> by Alan Orth in
|
||||
<span class="fas fa-folder" aria-hidden="true"></span> <a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
|
||||
|
||||
|
||||
</p>
|
||||
</header>
|
||||
<h2 id="2017-10-01">2017-10-01</h2>
|
||||
<ul>
|
||||
<li>Peter emailed to point out that many items in the <a href="https://cgspace.cgiar.org/handle/10568/2703">ILRI archive collection</a> have multiple handles:</li>
|
||||
</ul>
|
||||
<pre tabindex="0"><code>http://hdl.handle.net/10568/78495||http://hdl.handle.net/10568/79336
|
||||
</code></pre><ul>
|
||||
<li>There appears to be a pattern but I’ll have to look a bit closer and try to clean them up automatically, either in SQL or in OpenRefine</li>
|
||||
<li>Add Katherine Lutz to the groups for content submission and edit steps of the CGIAR System collections</li>
|
||||
</ul>
|
||||
<a href='https://alanorth.github.io/cgspace-notes/2017-10/'>Read more →</a>
|
||||
</article>
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
<nav class="blog-pagination">
|
||||
|
||||
<a class="btn btn-outline-primary" href="/cgspace-notes/page/4/" rel="prev" role="button">Previous page</a>
|
||||
@ -446,16 +443,16 @@ COPY 54701
|
||||
<ol class="list-unstyled">
|
||||
|
||||
|
||||
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
|
||||
|
||||
</ol>
|
||||
</section>
|
||||
|
||||
|
||||
@ -10,7 +10,7 @@
|
||||
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
|
||||
<meta property="og:type" content="website" />
|
||||
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />
|
||||
<meta property="og:updated_time" content="2021-10-28T18:08:13+03:00" />
|
||||
<meta property="og:updated_time" content="2021-11-01T10:48:13+02:00" />
|
||||
|
||||
|
||||
|
||||
@ -31,7 +31,7 @@
|
||||
"@type": "Person",
|
||||
"name": "Alan Orth"
|
||||
},
|
||||
"dateModified": "2021-09-01T09:14:07+03:00",
|
||||
"dateModified": "2021-11-01T11:14:07+03:00",
|
||||
"keywords": "notes, migration, notes",
|
||||
"description":"Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
|
||||
}
|
||||
@ -96,6 +96,65 @@
|
||||
|
||||
|
||||
|
||||
<article class="blog-post">
|
||||
<header>
|
||||
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2017-11/">November, 2017</a></h2>
|
||||
<p class="blog-post-meta"><time datetime="2017-11-02T09:37:54+02:00">Thu Nov 02, 2017</time> by Alan Orth in
|
||||
<span class="fas fa-folder" aria-hidden="true"></span> <a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
|
||||
|
||||
|
||||
</p>
|
||||
</header>
|
||||
<h2 id="2017-11-01">2017-11-01</h2>
|
||||
<ul>
|
||||
<li>The CORE developers responded to say they are looking into their bot not respecting our robots.txt</li>
|
||||
</ul>
|
||||
<h2 id="2017-11-02">2017-11-02</h2>
|
||||
<ul>
|
||||
<li>Today there have been no hits by CORE and no alerts from Linode (coincidence?)</li>
|
||||
</ul>
|
||||
<pre tabindex="0"><code># grep -c "CORE" /var/log/nginx/access.log
|
||||
0
|
||||
</code></pre><ul>
|
||||
<li>Generate list of authors on CGSpace for Peter to go through and correct:</li>
|
||||
</ul>
|
||||
<pre tabindex="0"><code>dspace=# \copy (select distinct text_value, count(*) as count from metadatavalue where metadata_field_id = (select metadata_field_id from metadatafieldregistry where element = 'contributor' and qualifier = 'author') AND resource_type_id = 2 group by text_value order by count desc) to /tmp/authors.csv with csv;
|
||||
COPY 54701
|
||||
</code></pre>
|
||||
<a href='https://alanorth.github.io/cgspace-notes/2017-11/'>Read more →</a>
|
||||
</article>
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
<article class="blog-post">
|
||||
<header>
|
||||
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2017-10/">October, 2017</a></h2>
|
||||
<p class="blog-post-meta"><time datetime="2017-10-01T08:07:54+03:00">Sun Oct 01, 2017</time> by Alan Orth in
|
||||
<span class="fas fa-folder" aria-hidden="true"></span> <a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
|
||||
|
||||
|
||||
</p>
|
||||
</header>
|
||||
<h2 id="2017-10-01">2017-10-01</h2>
|
||||
<ul>
|
||||
<li>Peter emailed to point out that many items in the <a href="https://cgspace.cgiar.org/handle/10568/2703">ILRI archive collection</a> have multiple handles:</li>
|
||||
</ul>
|
||||
<pre tabindex="0"><code>http://hdl.handle.net/10568/78495||http://hdl.handle.net/10568/79336
|
||||
</code></pre><ul>
|
||||
<li>There appears to be a pattern but I’ll have to look a bit closer and try to clean them up automatically, either in SQL or in OpenRefine</li>
|
||||
<li>Add Katherine Lutz to the groups for content submission and edit steps of the CGIAR System collections</li>
|
||||
</ul>
|
||||
<a href='https://alanorth.github.io/cgspace-notes/2017-10/'>Read more →</a>
|
||||
</article>
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
<article class="blog-post">
|
||||
<header>
|
||||
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/cgiar-library-migration/">CGIAR Library Migration</a></h2>
|
||||
@ -307,63 +366,6 @@
|
||||
|
||||
|
||||
|
||||
|
||||
<article class="blog-post">
|
||||
<header>
|
||||
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2017-02/">February, 2017</a></h2>
|
||||
<p class="blog-post-meta"><time datetime="2017-02-07T07:04:52-08:00">Tue Feb 07, 2017</time> by Alan Orth in
|
||||
|
||||
<span class="fas fa-tag" aria-hidden="true"></span> <a href="/cgspace-notes/tags/notes/" rel="tag">Notes</a>
|
||||
|
||||
</p>
|
||||
</header>
|
||||
<h2 id="2017-02-07">2017-02-07</h2>
|
||||
<ul>
|
||||
<li>An item was mapped twice erroneously again, so I had to remove one of the mappings manually:</li>
|
||||
</ul>
|
||||
<pre tabindex="0"><code>dspace=# select * from collection2item where item_id = '80278';
|
||||
id | collection_id | item_id
|
||||
-------+---------------+---------
|
||||
92551 | 313 | 80278
|
||||
92550 | 313 | 80278
|
||||
90774 | 1051 | 80278
|
||||
(3 rows)
|
||||
dspace=# delete from collection2item where id = 92551 and item_id = 80278;
|
||||
DELETE 1
|
||||
</code></pre><ul>
|
||||
<li>Create issue on GitHub to track the addition of CCAFS Phase II project tags (<a href="https://github.com/ilri/DSpace/issues/301">#301</a>)</li>
|
||||
<li>Looks like we’ll be using <code>cg.identifier.ccafsprojectpii</code> as the field name</li>
|
||||
</ul>
|
||||
<a href='https://alanorth.github.io/cgspace-notes/2017-02/'>Read more →</a>
|
||||
</article>
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
<article class="blog-post">
|
||||
<header>
|
||||
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2017-01/">January, 2017</a></h2>
|
||||
<p class="blog-post-meta"><time datetime="2017-01-02T10:43:00+03:00">Mon Jan 02, 2017</time> by Alan Orth in
|
||||
|
||||
<span class="fas fa-tag" aria-hidden="true"></span> <a href="/cgspace-notes/tags/notes/" rel="tag">Notes</a>
|
||||
|
||||
</p>
|
||||
</header>
|
||||
<h2 id="2017-01-02">2017-01-02</h2>
|
||||
<ul>
|
||||
<li>I checked to see if the Solr sharding task that is supposed to run on January 1st had run and saw there was an error</li>
|
||||
<li>I tested on DSpace Test as well and it doesn’t work there either</li>
|
||||
<li>I asked on the dspace-tech mailing list because it seems to be broken, and actually now I’m not sure if we’ve ever had the sharding task run successfully over all these years</li>
|
||||
</ul>
|
||||
<a href='https://alanorth.github.io/cgspace-notes/2017-01/'>Read more →</a>
|
||||
</article>
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
<nav class="blog-pagination">
|
||||
|
||||
<a class="btn btn-outline-primary" href="/cgspace-notes/page/5/" rel="prev" role="button">Previous page</a>
|
||||
@ -388,16 +390,16 @@ DELETE 1
|
||||
<ol class="list-unstyled">
|
||||
|
||||
|
||||
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
|
||||
|
||||
</ol>
|
||||
</section>
|
||||
|
||||
|
||||
@ -10,7 +10,7 @@
|
||||
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
|
||||
<meta property="og:type" content="website" />
|
||||
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />
|
||||
<meta property="og:updated_time" content="2021-10-28T18:08:13+03:00" />
|
||||
<meta property="og:updated_time" content="2021-11-01T10:48:13+02:00" />
|
||||
|
||||
|
||||
|
||||
@ -31,7 +31,7 @@
|
||||
"@type": "Person",
|
||||
"name": "Alan Orth"
|
||||
},
|
||||
"dateModified": "2021-09-01T09:14:07+03:00",
|
||||
"dateModified": "2021-11-01T11:14:07+03:00",
|
||||
"keywords": "notes, migration, notes",
|
||||
"description":"Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
|
||||
}
|
||||
@ -96,6 +96,63 @@
|
||||
|
||||
|
||||
|
||||
<article class="blog-post">
|
||||
<header>
|
||||
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2017-02/">February, 2017</a></h2>
|
||||
<p class="blog-post-meta"><time datetime="2017-02-07T07:04:52-08:00">Tue Feb 07, 2017</time> by Alan Orth in
|
||||
|
||||
<span class="fas fa-tag" aria-hidden="true"></span> <a href="/cgspace-notes/tags/notes/" rel="tag">Notes</a>
|
||||
|
||||
</p>
|
||||
</header>
|
||||
<h2 id="2017-02-07">2017-02-07</h2>
|
||||
<ul>
|
||||
<li>An item was mapped twice erroneously again, so I had to remove one of the mappings manually:</li>
|
||||
</ul>
|
||||
<pre tabindex="0"><code>dspace=# select * from collection2item where item_id = '80278';
|
||||
id | collection_id | item_id
|
||||
-------+---------------+---------
|
||||
92551 | 313 | 80278
|
||||
92550 | 313 | 80278
|
||||
90774 | 1051 | 80278
|
||||
(3 rows)
|
||||
dspace=# delete from collection2item where id = 92551 and item_id = 80278;
|
||||
DELETE 1
|
||||
</code></pre><ul>
|
||||
<li>Create issue on GitHub to track the addition of CCAFS Phase II project tags (<a href="https://github.com/ilri/DSpace/issues/301">#301</a>)</li>
|
||||
<li>Looks like we’ll be using <code>cg.identifier.ccafsprojectpii</code> as the field name</li>
|
||||
</ul>
|
||||
<a href='https://alanorth.github.io/cgspace-notes/2017-02/'>Read more →</a>
|
||||
</article>
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
<article class="blog-post">
|
||||
<header>
|
||||
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2017-01/">January, 2017</a></h2>
|
||||
<p class="blog-post-meta"><time datetime="2017-01-02T10:43:00+03:00">Mon Jan 02, 2017</time> by Alan Orth in
|
||||
|
||||
<span class="fas fa-tag" aria-hidden="true"></span> <a href="/cgspace-notes/tags/notes/" rel="tag">Notes</a>
|
||||
|
||||
</p>
|
||||
</header>
|
||||
<h2 id="2017-01-02">2017-01-02</h2>
|
||||
<ul>
|
||||
<li>I checked to see if the Solr sharding task that is supposed to run on January 1st had run and saw there was an error</li>
|
||||
<li>I tested on DSpace Test as well and it doesn’t work there either</li>
|
||||
<li>I asked on the dspace-tech mailing list because it seems to be broken, and actually now I’m not sure if we’ve ever had the sharding task run successfully over all these years</li>
|
||||
</ul>
|
||||
<a href='https://alanorth.github.io/cgspace-notes/2017-01/'>Read more →</a>
|
||||
</article>
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
<article class="blog-post">
|
||||
<header>
|
||||
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2016-12/">December, 2016</a></h2>
|
||||
@ -318,54 +375,6 @@ dspacetest=# select text_value from metadatavalue where metadata_field_id=3 and
|
||||
|
||||
|
||||
|
||||
|
||||
<article class="blog-post">
|
||||
<header>
|
||||
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2016-04/">April, 2016</a></h2>
|
||||
<p class="blog-post-meta"><time datetime="2016-04-04T11:06:00+03:00">Mon Apr 04, 2016</time> by Alan Orth in
|
||||
|
||||
<span class="fas fa-tag" aria-hidden="true"></span> <a href="/cgspace-notes/tags/notes/" rel="tag">Notes</a>
|
||||
|
||||
</p>
|
||||
</header>
|
||||
<h2 id="2016-04-04">2016-04-04</h2>
|
||||
<ul>
|
||||
<li>Looking at log file use on CGSpace and notice that we need to work on our cron setup a bit</li>
|
||||
<li>We are backing up all logs in the log folder, including useless stuff like solr, cocoon, handle-plugin, etc</li>
|
||||
<li>After running DSpace for over five years I’ve never needed to look in any other log file than dspace.log, leave alone one from last year!</li>
|
||||
<li>This will save us a few gigs of backup space we’re paying for on S3</li>
|
||||
<li>Also, I noticed the <code>checker</code> log has some errors we should pay attention to:</li>
|
||||
</ul>
|
||||
<a href='https://alanorth.github.io/cgspace-notes/2016-04/'>Read more →</a>
|
||||
</article>
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
<article class="blog-post">
|
||||
<header>
|
||||
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2016-03/">March, 2016</a></h2>
|
||||
<p class="blog-post-meta"><time datetime="2016-03-02T16:50:00+03:00">Wed Mar 02, 2016</time> by Alan Orth in
|
||||
|
||||
<span class="fas fa-tag" aria-hidden="true"></span> <a href="/cgspace-notes/tags/notes/" rel="tag">Notes</a>
|
||||
|
||||
</p>
|
||||
</header>
|
||||
<h2 id="2016-03-02">2016-03-02</h2>
|
||||
<ul>
|
||||
<li>Looking at issues with author authorities on CGSpace</li>
|
||||
<li>For some reason we still have the <code>index-lucene-update</code> cron job active on CGSpace, but I’m pretty sure we don’t need it as of the latest few versions of Atmire’s Listings and Reports module</li>
|
||||
<li>Reinstall my local (Mac OS X) DSpace stack with Tomcat 7, PostgreSQL 9.3, and Java JDK 1.7 to match environment on CGSpace server</li>
|
||||
</ul>
|
||||
<a href='https://alanorth.github.io/cgspace-notes/2016-03/'>Read more →</a>
|
||||
</article>
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
<nav class="blog-pagination">
|
||||
|
||||
<a class="btn btn-outline-primary" href="/cgspace-notes/page/6/" rel="prev" role="button">Previous page</a>
|
||||
@ -390,16 +399,16 @@ dspacetest=# select text_value from metadatavalue where metadata_field_id=3 and
|
||||
<ol class="list-unstyled">
|
||||
|
||||
|
||||
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
|
||||
|
||||
</ol>
|
||||
</section>
|
||||
|
||||
|
||||
@ -10,7 +10,7 @@
|
||||
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
|
||||
<meta property="og:type" content="website" />
|
||||
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />
|
||||
<meta property="og:updated_time" content="2021-10-28T18:08:13+03:00" />
|
||||
<meta property="og:updated_time" content="2021-11-01T10:48:13+02:00" />
|
||||
|
||||
|
||||
|
||||
@ -31,7 +31,7 @@
|
||||
"@type": "Person",
|
||||
"name": "Alan Orth"
|
||||
},
|
||||
"dateModified": "2021-09-01T09:14:07+03:00",
|
||||
"dateModified": "2021-11-01T11:14:07+03:00",
|
||||
"keywords": "notes, migration, notes",
|
||||
"description":"Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
|
||||
}
|
||||
@ -96,6 +96,54 @@
|
||||
|
||||
|
||||
|
||||
<article class="blog-post">
|
||||
<header>
|
||||
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2016-04/">April, 2016</a></h2>
|
||||
<p class="blog-post-meta"><time datetime="2016-04-04T11:06:00+03:00">Mon Apr 04, 2016</time> by Alan Orth in
|
||||
|
||||
<span class="fas fa-tag" aria-hidden="true"></span> <a href="/cgspace-notes/tags/notes/" rel="tag">Notes</a>
|
||||
|
||||
</p>
|
||||
</header>
|
||||
<h2 id="2016-04-04">2016-04-04</h2>
|
||||
<ul>
|
||||
<li>Looking at log file use on CGSpace and notice that we need to work on our cron setup a bit</li>
|
||||
<li>We are backing up all logs in the log folder, including useless stuff like solr, cocoon, handle-plugin, etc</li>
|
||||
<li>After running DSpace for over five years I’ve never needed to look in any other log file than dspace.log, leave alone one from last year!</li>
|
||||
<li>This will save us a few gigs of backup space we’re paying for on S3</li>
|
||||
<li>Also, I noticed the <code>checker</code> log has some errors we should pay attention to:</li>
|
||||
</ul>
|
||||
<a href='https://alanorth.github.io/cgspace-notes/2016-04/'>Read more →</a>
|
||||
</article>
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
<article class="blog-post">
|
||||
<header>
|
||||
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2016-03/">March, 2016</a></h2>
|
||||
<p class="blog-post-meta"><time datetime="2016-03-02T16:50:00+03:00">Wed Mar 02, 2016</time> by Alan Orth in
|
||||
|
||||
<span class="fas fa-tag" aria-hidden="true"></span> <a href="/cgspace-notes/tags/notes/" rel="tag">Notes</a>
|
||||
|
||||
</p>
|
||||
</header>
|
||||
<h2 id="2016-03-02">2016-03-02</h2>
|
||||
<ul>
|
||||
<li>Looking at issues with author authorities on CGSpace</li>
|
||||
<li>For some reason we still have the <code>index-lucene-update</code> cron job active on CGSpace, but I’m pretty sure we don’t need it as of the latest few versions of Atmire’s Listings and Reports module</li>
|
||||
<li>Reinstall my local (Mac OS X) DSpace stack with Tomcat 7, PostgreSQL 9.3, and Java JDK 1.7 to match environment on CGSpace server</li>
|
||||
</ul>
|
||||
<a href='https://alanorth.github.io/cgspace-notes/2016-03/'>Read more →</a>
|
||||
</article>
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
<article class="blog-post">
|
||||
<header>
|
||||
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2016-02/">February, 2016</a></h2>
|
||||
@ -199,39 +247,6 @@
|
||||
|
||||
|
||||
|
||||
|
||||
<article class="blog-post">
|
||||
<header>
|
||||
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/1-01/"></a></h2>
|
||||
<p class="blog-post-meta"><time datetime="0001-01-01T00:00:00Z">Mon Jan 01, 0001</time> by Alan Orth</p>
|
||||
</header>
|
||||
<h2 id="categories-notes">e–
|
||||
title: “October, 2021”
|
||||
date: 2021-10-01T11:14:07+03:00
|
||||
author: “Alan Orth”
|
||||
categories: [“Notes”]</h2>
|
||||
<h2 id="2021-10-01">2021-10-01</h2>
|
||||
<ul>
|
||||
<li>Export all affiliations on CGSpace and run them against the latest RoR data dump:</li>
|
||||
</ul>
|
||||
<pre tabindex="0"><code class="language-console" data-lang="console">localhost/dspace63= > \COPY (SELECT DISTINCT text_value as "cg.contributor.affiliation", count(*) FROM metadatavalue WHERE dspace_object_id IN (SELECT uuid FROM item) AND metadata_field_id = 211 GROUP BY text_value ORDER BY count DESC) to /tmp/2021-10-01-affiliations.csv WITH CSV HEADER;
|
||||
$ csvcut -c 1 /tmp/2021-10-01-affiliations.csv | sed 1d > /tmp/2021-10-01-affiliations.txt
|
||||
$ ./ilri/ror-lookup.py -i /tmp/2021-10-01-affiliations.txt -r 2021-09-23-ror-data.json -o /tmp/2021-10-01-affili
|
||||
ations-matching.csv
|
||||
$ csvgrep -c matched -m true /tmp/2021-10-01-affiliations-matching.csv | sed 1d | wc -l
|
||||
1879
|
||||
$ wc -l /tmp/2021-10-01-affiliations.txt
|
||||
7100 /tmp/2021-10-01-affiliations.txt
|
||||
</code></pre><ul>
|
||||
<li>So we have 1879/7100 (26.46%) matching already</li>
|
||||
</ul>
|
||||
<a href='https://alanorth.github.io/cgspace-notes/1-01/'>Read more →</a>
|
||||
</article>
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
<nav class="blog-pagination">
|
||||
|
||||
|
||||
@ -256,16 +271,16 @@ $ wc -l /tmp/2021-10-01-affiliations.txt
|
||||
<ol class="list-unstyled">
|
||||
|
||||
|
||||
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
|
||||
|
||||
</ol>
|
||||
</section>
|
||||
|
||||
|
||||
Reference in New Issue
Block a user