Add notes for 2018-11-01
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---
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title: "November, 2018"
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date: 2018-11-01T16:41:30+02:00
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author: "Alan Orth"
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tags: ["Notes"]
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---
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## 2018-11-01
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- Finalize AReS Phase I and Phase II ToRs
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- Send a note about my [dspace-statistics-api](https://github.com/ilri/dspace-statistics-api) to the dspace-tech mailing list
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<!--more-->
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<!-- vim: set sw=2 ts=2: -->
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@ -282,6 +282,8 @@ db.statementpool = true
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<ol class="list-unstyled">
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<li><a href="/cgspace-notes/2018-11/">November, 2018</a></li>
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<li><a href="/cgspace-notes/2018-10/">October, 2018</a></li>
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<li><a href="/cgspace-notes/2018-09/">September, 2018</a></li>
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@ -290,8 +292,6 @@ db.statementpool = true
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<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
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<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
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</ol>
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</section>
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@ -299,6 +299,8 @@ $ curl -o /dev/null -s -w %{time_total}\\n https://cgspace.cgiar.org/rest/handle
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<ol class="list-unstyled">
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<li><a href="/cgspace-notes/2018-11/">November, 2018</a></li>
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<li><a href="/cgspace-notes/2018-10/">October, 2018</a></li>
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<li><a href="/cgspace-notes/2018-09/">September, 2018</a></li>
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@ -307,8 +309,6 @@ $ curl -o /dev/null -s -w %{time_total}\\n https://cgspace.cgiar.org/rest/handle
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<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
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<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
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</ol>
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</section>
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@ -214,6 +214,8 @@ $ find SimpleArchiveForBio/ -iname “*.pdf” -exec basename {} \; | so
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<ol class="list-unstyled">
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<li><a href="/cgspace-notes/2018-11/">November, 2018</a></li>
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<li><a href="/cgspace-notes/2018-10/">October, 2018</a></li>
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<li><a href="/cgspace-notes/2018-09/">September, 2018</a></li>
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@ -222,8 +224,6 @@ $ find SimpleArchiveForBio/ -iname “*.pdf” -exec basename {} \; | so
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<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
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<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
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</ol>
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</section>
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@ -467,6 +467,8 @@ Bitstream: tést señora alimentación.pdf
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<ol class="list-unstyled">
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<li><a href="/cgspace-notes/2018-11/">November, 2018</a></li>
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<li><a href="/cgspace-notes/2018-10/">October, 2018</a></li>
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<li><a href="/cgspace-notes/2018-09/">September, 2018</a></li>
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@ -475,8 +477,6 @@ Bitstream: tést señora alimentación.pdf
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<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
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<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
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</ol>
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</section>
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@ -367,6 +367,8 @@ Reinstall my local (Mac OS X) DSpace stack with Tomcat 7, PostgreSQL 9.3, and Ja
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<ol class="list-unstyled">
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<li><a href="/cgspace-notes/2018-11/">November, 2018</a></li>
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<li><a href="/cgspace-notes/2018-10/">October, 2018</a></li>
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<li><a href="/cgspace-notes/2018-09/">September, 2018</a></li>
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@ -375,8 +377,6 @@ Reinstall my local (Mac OS X) DSpace stack with Tomcat 7, PostgreSQL 9.3, and Ja
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<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
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<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
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</ol>
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</section>
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@ -584,6 +584,8 @@ dspace.log.2016-04-27:7271
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<ol class="list-unstyled">
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<li><a href="/cgspace-notes/2018-11/">November, 2018</a></li>
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<li><a href="/cgspace-notes/2018-10/">October, 2018</a></li>
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<li><a href="/cgspace-notes/2018-09/">September, 2018</a></li>
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@ -592,8 +594,6 @@ dspace.log.2016-04-27:7271
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<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
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<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
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</ol>
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</section>
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@ -434,6 +434,8 @@ sys 0m20.540s
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<ol class="list-unstyled">
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<li><a href="/cgspace-notes/2018-11/">November, 2018</a></li>
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<li><a href="/cgspace-notes/2018-10/">October, 2018</a></li>
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<li><a href="/cgspace-notes/2018-09/">September, 2018</a></li>
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@ -442,8 +444,6 @@ sys 0m20.540s
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<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
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<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
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</ol>
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</section>
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@ -479,6 +479,8 @@ $ ./delete-metadata-values.py -f dc.contributor.corporate -i Corporate-Authors-D
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<ol class="list-unstyled">
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<li><a href="/cgspace-notes/2018-11/">November, 2018</a></li>
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<li><a href="/cgspace-notes/2018-10/">October, 2018</a></li>
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<li><a href="/cgspace-notes/2018-09/">September, 2018</a></li>
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@ -487,8 +489,6 @@ $ ./delete-metadata-values.py -f dc.contributor.corporate -i Corporate-Authors-D
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<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
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<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
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</ol>
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</section>
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@ -397,6 +397,8 @@ discovery.index.authority.ignore-variants=true
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<ol class="list-unstyled">
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<li><a href="/cgspace-notes/2018-11/">November, 2018</a></li>
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<li><a href="/cgspace-notes/2018-10/">October, 2018</a></li>
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<li><a href="/cgspace-notes/2018-09/">September, 2018</a></li>
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@ -405,8 +407,6 @@ discovery.index.authority.ignore-variants=true
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<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
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<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
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</ol>
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</section>
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@ -470,6 +470,8 @@ $ JAVA_OPTS="-Dfile.encoding=UTF-8 -Xmx512m" /home/cgspace.cgiar.org/b
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<ol class="list-unstyled">
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<li><a href="/cgspace-notes/2018-11/">November, 2018</a></li>
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<li><a href="/cgspace-notes/2018-10/">October, 2018</a></li>
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<li><a href="/cgspace-notes/2018-09/">September, 2018</a></li>
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@ -478,8 +480,6 @@ $ JAVA_OPTS="-Dfile.encoding=UTF-8 -Xmx512m" /home/cgspace.cgiar.org/b
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<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
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<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
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</ol>
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</section>
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@ -770,6 +770,8 @@ $ ./delete-metadata-values.py -i ilrisubjects-delete-13.csv -f cg.subject.ilri -
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<ol class="list-unstyled">
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<li><a href="/cgspace-notes/2018-11/">November, 2018</a></li>
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<li><a href="/cgspace-notes/2018-10/">October, 2018</a></li>
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<li><a href="/cgspace-notes/2018-09/">September, 2018</a></li>
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@ -778,8 +780,6 @@ $ ./delete-metadata-values.py -i ilrisubjects-delete-13.csv -f cg.subject.ilri -
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<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
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<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
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</ol>
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</section>
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@ -455,6 +455,8 @@ dspace=# update metadatavalue set text_value = regexp_replace(text_value, 'http:
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<ol class="list-unstyled">
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<li><a href="/cgspace-notes/2018-11/">November, 2018</a></li>
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<li><a href="/cgspace-notes/2018-10/">October, 2018</a></li>
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<li><a href="/cgspace-notes/2018-09/">September, 2018</a></li>
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@ -463,8 +465,6 @@ dspace=# update metadatavalue set text_value = regexp_replace(text_value, 'http:
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<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
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<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
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</ol>
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</section>
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@ -672,6 +672,8 @@ org.dspace.discovery.SearchServiceException: Error executing query
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<ol class="list-unstyled">
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<li><a href="/cgspace-notes/2018-11/">November, 2018</a></li>
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<li><a href="/cgspace-notes/2018-10/">October, 2018</a></li>
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<li><a href="/cgspace-notes/2018-09/">September, 2018</a></li>
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@ -680,8 +682,6 @@ org.dspace.discovery.SearchServiceException: Error executing query
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<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
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<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
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</ol>
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</section>
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@ -908,6 +908,8 @@ $ exit
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<ol class="list-unstyled">
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<li><a href="/cgspace-notes/2018-11/">November, 2018</a></li>
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<li><a href="/cgspace-notes/2018-10/">October, 2018</a></li>
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<li><a href="/cgspace-notes/2018-09/">September, 2018</a></li>
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@ -916,8 +918,6 @@ $ exit
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<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
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<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
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</ol>
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</section>
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@ -453,6 +453,8 @@ $ gs -sDEVICE=pdfwrite -dCompatibilityLevel=1.4 -dPDFSETTINGS=/ebook -dNOPAUSE -
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<ol class="list-unstyled">
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<li><a href="/cgspace-notes/2018-11/">November, 2018</a></li>
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<li><a href="/cgspace-notes/2018-10/">October, 2018</a></li>
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<li><a href="/cgspace-notes/2018-09/">September, 2018</a></li>
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@ -461,8 +463,6 @@ $ gs -sDEVICE=pdfwrite -dCompatibilityLevel=1.4 -dPDFSETTINGS=/ebook -dNOPAUSE -
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<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
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<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
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</ol>
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</section>
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@ -525,6 +525,8 @@ COPY 1968
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<ol class="list-unstyled">
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<li><a href="/cgspace-notes/2018-11/">November, 2018</a></li>
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<li><a href="/cgspace-notes/2018-10/">October, 2018</a></li>
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<li><a href="/cgspace-notes/2018-09/">September, 2018</a></li>
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@ -533,8 +535,6 @@ COPY 1968
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<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
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<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
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</ol>
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</section>
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@ -439,6 +439,8 @@ $ ./delete-metadata-values.py -i Investors-Delete-121.csv -f dc.description.spon
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<ol class="list-unstyled">
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<li><a href="/cgspace-notes/2018-11/">November, 2018</a></li>
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<li><a href="/cgspace-notes/2018-10/">October, 2018</a></li>
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<li><a href="/cgspace-notes/2018-09/">September, 2018</a></li>
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@ -447,8 +449,6 @@ $ ./delete-metadata-values.py -i Investors-Delete-121.csv -f dc.description.spon
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<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
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<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
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</ol>
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</section>
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@ -718,6 +718,8 @@ $ gem install compass -v 1.0.3
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<ol class="list-unstyled">
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<li><a href="/cgspace-notes/2018-11/">November, 2018</a></li>
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<li><a href="/cgspace-notes/2018-10/">October, 2018</a></li>
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<li><a href="/cgspace-notes/2018-09/">September, 2018</a></li>
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@ -726,8 +728,6 @@ $ gem install compass -v 1.0.3
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<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
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<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
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</ol>
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</section>
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@ -472,6 +472,8 @@ UPDATE 187
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<ol class="list-unstyled">
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<li><a href="/cgspace-notes/2018-11/">November, 2018</a></li>
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<li><a href="/cgspace-notes/2018-10/">October, 2018</a></li>
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<li><a href="/cgspace-notes/2018-09/">September, 2018</a></li>
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@ -480,8 +482,6 @@ UPDATE 187
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<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
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<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
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</ol>
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</section>
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@ -290,6 +290,8 @@ $ JAVA_OPTS="-Xmx1024m -Dfile.encoding=UTF-8" [dspace]/bin/dspace impo
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<ol class="list-unstyled">
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<li><a href="/cgspace-notes/2018-11/">November, 2018</a></li>
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<li><a href="/cgspace-notes/2018-10/">October, 2018</a></li>
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<li><a href="/cgspace-notes/2018-09/">September, 2018</a></li>
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@ -298,8 +300,6 @@ $ JAVA_OPTS="-Xmx1024m -Dfile.encoding=UTF-8" [dspace]/bin/dspace impo
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<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
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<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
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</ol>
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</section>
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@ -325,6 +325,8 @@ delete from metadatavalue where resource_type_id=2 and metadata_field_id=235 and
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<ol class="list-unstyled">
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<li><a href="/cgspace-notes/2018-11/">November, 2018</a></li>
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<li><a href="/cgspace-notes/2018-10/">October, 2018</a></li>
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<li><a href="/cgspace-notes/2018-09/">September, 2018</a></li>
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@ -333,8 +335,6 @@ delete from metadatavalue where resource_type_id=2 and metadata_field_id=235 and
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<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
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<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
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</ol>
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</section>
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@ -611,6 +611,8 @@ org.apache.commons.dbcp.SQLNestedException: Cannot get a connection, pool error
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<ol class="list-unstyled">
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<li><a href="/cgspace-notes/2018-11/">November, 2018</a></li>
|
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|
||||
<li><a href="/cgspace-notes/2018-10/">October, 2018</a></li>
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<li><a href="/cgspace-notes/2018-09/">September, 2018</a></li>
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@ -619,8 +621,6 @@ org.apache.commons.dbcp.SQLNestedException: Cannot get a connection, pool error
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<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
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<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
|
||||
|
||||
</ol>
|
||||
</section>
|
||||
|
||||
|
|
|
|||
|
|
@ -783,6 +783,8 @@ Cert Status: good
|
|||
<ol class="list-unstyled">
|
||||
|
||||
|
||||
<li><a href="/cgspace-notes/2018-11/">November, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-10/">October, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-09/">September, 2018</a></li>
|
||||
|
|
@ -791,8 +793,6 @@ Cert Status: good
|
|||
|
||||
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
|
||||
|
||||
</ol>
|
||||
</section>
|
||||
|
||||
|
|
|
|||
|
|
@ -548,6 +548,8 @@ session_id=6C30F10B4351A4ED83EC6ED50AFD6B6A
|
|||
<ol class="list-unstyled">
|
||||
|
||||
|
||||
<li><a href="/cgspace-notes/2018-11/">November, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-10/">October, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-09/">September, 2018</a></li>
|
||||
|
|
@ -556,8 +558,6 @@ session_id=6C30F10B4351A4ED83EC6ED50AFD6B6A
|
|||
|
||||
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
|
||||
|
||||
</ol>
|
||||
</section>
|
||||
|
||||
|
|
|
|||
|
|
@ -1192,6 +1192,8 @@ $ cat dspace.log.2017-11-28 | grep -o -E 'session_id=[A-Z0-9]{32}' | sort -n | u
|
|||
<ol class="list-unstyled">
|
||||
|
||||
|
||||
<li><a href="/cgspace-notes/2018-11/">November, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-10/">October, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-09/">September, 2018</a></li>
|
||||
|
|
@ -1200,8 +1202,6 @@ $ cat dspace.log.2017-11-28 | grep -o -E 'session_id=[A-Z0-9]{32}' | sort -n | u
|
|||
|
||||
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
|
||||
|
||||
</ol>
|
||||
</section>
|
||||
|
||||
|
|
|
|||
|
|
@ -957,6 +957,8 @@ DELETE 20
|
|||
<ol class="list-unstyled">
|
||||
|
||||
|
||||
<li><a href="/cgspace-notes/2018-11/">November, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-10/">October, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-09/">September, 2018</a></li>
|
||||
|
|
@ -965,8 +967,6 @@ DELETE 20
|
|||
|
||||
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
|
||||
|
||||
</ol>
|
||||
</section>
|
||||
|
||||
|
|
|
|||
|
|
@ -1784,6 +1784,8 @@ Catalina:type=Manager,context=/,host=localhost activeSessions 8
|
|||
<ol class="list-unstyled">
|
||||
|
||||
|
||||
<li><a href="/cgspace-notes/2018-11/">November, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-10/">October, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-09/">September, 2018</a></li>
|
||||
|
|
@ -1792,8 +1794,6 @@ Catalina:type=Manager,context=/,host=localhost activeSessions 8
|
|||
|
||||
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
|
||||
|
||||
</ol>
|
||||
</section>
|
||||
|
||||
|
|
|
|||
|
|
@ -1303,6 +1303,8 @@ UPDATE 3
|
|||
<ol class="list-unstyled">
|
||||
|
||||
|
||||
<li><a href="/cgspace-notes/2018-11/">November, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-10/">October, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-09/">September, 2018</a></li>
|
||||
|
|
@ -1311,8 +1313,6 @@ UPDATE 3
|
|||
|
||||
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
|
||||
|
||||
</ol>
|
||||
</section>
|
||||
|
||||
|
|
|
|||
|
|
@ -730,6 +730,8 @@ Fixed 5 occurences of: GENEBANKS
|
|||
<ol class="list-unstyled">
|
||||
|
||||
|
||||
<li><a href="/cgspace-notes/2018-11/">November, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-10/">October, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-09/">September, 2018</a></li>
|
||||
|
|
@ -738,8 +740,6 @@ Fixed 5 occurences of: GENEBANKS
|
|||
|
||||
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
|
||||
|
||||
</ol>
|
||||
</section>
|
||||
|
||||
|
|
|
|||
|
|
@ -727,6 +727,8 @@ $ pg_restore -O -U dspacetest -d dspacetest -W -h localhost /tmp/dspace_2018-04-
|
|||
<ol class="list-unstyled">
|
||||
|
||||
|
||||
<li><a href="/cgspace-notes/2018-11/">November, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-10/">October, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-09/">September, 2018</a></li>
|
||||
|
|
@ -735,8 +737,6 @@ $ pg_restore -O -U dspacetest -d dspacetest -W -h localhost /tmp/dspace_2018-04-
|
|||
|
||||
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
|
||||
|
||||
</ol>
|
||||
</section>
|
||||
|
||||
|
|
|
|||
|
|
@ -606,6 +606,8 @@ $ psql -h localhost -U postgres dspacetest
|
|||
<ol class="list-unstyled">
|
||||
|
||||
|
||||
<li><a href="/cgspace-notes/2018-11/">November, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-10/">October, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-09/">September, 2018</a></li>
|
||||
|
|
@ -614,8 +616,6 @@ $ psql -h localhost -U postgres dspacetest
|
|||
|
||||
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
|
||||
|
||||
</ol>
|
||||
</section>
|
||||
|
||||
|
|
|
|||
|
|
@ -586,6 +586,8 @@ $ sed '/^id/d' 10568-*.csv | csvcut -c 1,2 > map-to-cifor-archive.csv
|
|||
<ol class="list-unstyled">
|
||||
|
||||
|
||||
<li><a href="/cgspace-notes/2018-11/">November, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-10/">October, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-09/">September, 2018</a></li>
|
||||
|
|
@ -594,8 +596,6 @@ $ sed '/^id/d' 10568-*.csv | csvcut -c 1,2 > map-to-cifor-archive.csv
|
|||
|
||||
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
|
||||
|
||||
</ol>
|
||||
</section>
|
||||
|
||||
|
|
|
|||
|
|
@ -697,6 +697,8 @@ dspace=# select count(text_value) from metadatavalue where resource_type_id=2 an
|
|||
<ol class="list-unstyled">
|
||||
|
||||
|
||||
<li><a href="/cgspace-notes/2018-11/">November, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-10/">October, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-09/">September, 2018</a></li>
|
||||
|
|
@ -705,8 +707,6 @@ dspace=# select count(text_value) from metadatavalue where resource_type_id=2 an
|
|||
|
||||
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
|
||||
|
||||
</ol>
|
||||
</section>
|
||||
|
||||
|
|
|
|||
|
|
@ -533,6 +533,8 @@ $ dspace database migrate ignored
|
|||
<ol class="list-unstyled">
|
||||
|
||||
|
||||
<li><a href="/cgspace-notes/2018-11/">November, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-10/">October, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-09/">September, 2018</a></li>
|
||||
|
|
@ -541,8 +543,6 @@ $ dspace database migrate ignored
|
|||
|
||||
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
|
||||
|
||||
</ol>
|
||||
</section>
|
||||
|
||||
|
|
|
|||
|
|
@ -911,6 +911,8 @@ UPDATE metadatavalue SET text_value='ja' WHERE resource_type_id=2 AND metadata_f
|
|||
<ol class="list-unstyled">
|
||||
|
||||
|
||||
<li><a href="/cgspace-notes/2018-11/">November, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-10/">October, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-09/">September, 2018</a></li>
|
||||
|
|
@ -919,8 +921,6 @@ UPDATE metadatavalue SET text_value='ja' WHERE resource_type_id=2 AND metadata_f
|
|||
|
||||
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
|
||||
|
||||
</ol>
|
||||
</section>
|
||||
|
||||
|
|
|
|||
|
|
@ -6,14 +6,28 @@
|
|||
<meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no">
|
||||
|
||||
<meta property="og:title" content="October, 2018" />
|
||||
<meta property="og:description" content="2018-10-01 Phil Thornton got an ORCID identifier so we need to add it to the list on CGSpace and tag his existing items I created a GitHub issue to track this #389, because I’m super busy in Nairobi right now 2018-10-03 I see Moayad was busy collecting item views and downloads from CGSpace yesterday: # zcat --force /var/log/nginx/*.log /var/log/nginx/*.log.1 | grep -E "02/Oct/2018" | awk '{print $1} ' | sort | uniq -c | sort -n | tail -n 10 933 40." />
|
||||
<meta property="og:description" content="2018-10-01
|
||||
|
||||
|
||||
Phil Thornton got an ORCID identifier so we need to add it to the list on CGSpace and tag his existing items
|
||||
I created a GitHub issue to track this #389, because I’m super busy in Nairobi right now
|
||||
|
||||
|
||||
" />
|
||||
<meta property="og:type" content="article" />
|
||||
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/2018-10/" /><meta property="article:published_time" content="2018-10-01T22:31:54+03:00"/>
|
||||
<meta property="article:modified_time" content="2018-10-30T14:13:08+02:00"/>
|
||||
<meta property="article:modified_time" content="2018-11-01T16:42:20+02:00"/>
|
||||
|
||||
<meta name="twitter:card" content="summary"/>
|
||||
<meta name="twitter:title" content="October, 2018"/>
|
||||
<meta name="twitter:description" content="2018-10-01 Phil Thornton got an ORCID identifier so we need to add it to the list on CGSpace and tag his existing items I created a GitHub issue to track this #389, because I’m super busy in Nairobi right now 2018-10-03 I see Moayad was busy collecting item views and downloads from CGSpace yesterday: # zcat --force /var/log/nginx/*.log /var/log/nginx/*.log.1 | grep -E "02/Oct/2018" | awk '{print $1} ' | sort | uniq -c | sort -n | tail -n 10 933 40."/>
|
||||
<meta name="twitter:description" content="2018-10-01
|
||||
|
||||
|
||||
Phil Thornton got an ORCID identifier so we need to add it to the list on CGSpace and tag his existing items
|
||||
I created a GitHub issue to track this #389, because I’m super busy in Nairobi right now
|
||||
|
||||
|
||||
"/>
|
||||
<meta name="generator" content="Hugo 0.50" />
|
||||
|
||||
|
||||
|
|
@ -26,7 +40,7 @@
|
|||
"url": "https://alanorth.github.io/cgspace-notes/2018-10/",
|
||||
"wordCount": "4519",
|
||||
"datePublished": "2018-10-01T22:31:54+03:00",
|
||||
"dateModified": "2018-10-30T14:13:08+02:00",
|
||||
"dateModified": "2018-11-01T16:42:20+02:00",
|
||||
"author": {
|
||||
"@type": "Person",
|
||||
"name": "Alan Orth"
|
||||
|
|
@ -92,15 +106,15 @@
|
|||
|
||||
</p>
|
||||
</header>
|
||||
|
||||
|
||||
<h2 id="2018-10-01">2018-10-01</h2>
|
||||
<h2 id="2018-10-01">2018-10-01</h2>
|
||||
|
||||
<ul>
|
||||
<li>Phil Thornton got an ORCID identifier so we need to add it to the list on CGSpace and tag his existing items</li>
|
||||
<li>I created a GitHub issue to track this <a href="https://github.com/ilri/DSpace/issues/389">#389</a>, because I’m super busy in Nairobi right now</li>
|
||||
</ul>
|
||||
|
||||
<p></p>
|
||||
|
||||
<h2 id="2018-10-03">2018-10-03</h2>
|
||||
|
||||
<ul>
|
||||
|
|
@ -781,7 +795,6 @@ $ curl -X GET -H "Content-Type: application/json" -H "Accept: app
|
|||
|
||||
<!-- vim: set sw=2 ts=2: -->
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
|
@ -801,6 +814,8 @@ $ curl -X GET -H "Content-Type: application/json" -H "Accept: app
|
|||
<ol class="list-unstyled">
|
||||
|
||||
|
||||
<li><a href="/cgspace-notes/2018-11/">November, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-10/">October, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-09/">September, 2018</a></li>
|
||||
|
|
@ -809,8 +824,6 @@ $ curl -X GET -H "Content-Type: application/json" -H "Accept: app
|
|||
|
||||
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
|
||||
|
||||
</ol>
|
||||
</section>
|
||||
|
||||
|
|
|
|||
|
|
@ -0,0 +1,190 @@
|
|||
<!DOCTYPE html>
|
||||
<html lang="en">
|
||||
|
||||
<head>
|
||||
<meta charset="utf-8">
|
||||
<meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no">
|
||||
|
||||
<meta property="og:title" content="November, 2018" />
|
||||
<meta property="og:description" content="2018-11-01
|
||||
|
||||
|
||||
Finalize AReS Phase I and Phase II ToRs
|
||||
Send a note about my dspace-statistics-api to the dspace-tech mailing list
|
||||
|
||||
|
||||
" />
|
||||
<meta property="og:type" content="article" />
|
||||
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/2018-11/" /><meta property="article:published_time" content="2018-11-01T16:41:30+02:00"/>
|
||||
<meta property="article:modified_time" content="2018-11-01T16:41:30+02:00"/>
|
||||
|
||||
<meta name="twitter:card" content="summary"/>
|
||||
<meta name="twitter:title" content="November, 2018"/>
|
||||
<meta name="twitter:description" content="2018-11-01
|
||||
|
||||
|
||||
Finalize AReS Phase I and Phase II ToRs
|
||||
Send a note about my dspace-statistics-api to the dspace-tech mailing list
|
||||
|
||||
|
||||
"/>
|
||||
<meta name="generator" content="Hugo 0.50" />
|
||||
|
||||
|
||||
|
||||
<script type="application/ld+json">
|
||||
{
|
||||
"@context": "http://schema.org",
|
||||
"@type": "BlogPosting",
|
||||
"headline": "November, 2018",
|
||||
"url": "https://alanorth.github.io/cgspace-notes/2018-11/",
|
||||
"wordCount": "20",
|
||||
"datePublished": "2018-11-01T16:41:30+02:00",
|
||||
"dateModified": "2018-11-01T16:41:30+02:00",
|
||||
"author": {
|
||||
"@type": "Person",
|
||||
"name": "Alan Orth"
|
||||
},
|
||||
"keywords": "Notes"
|
||||
}
|
||||
</script>
|
||||
|
||||
|
||||
|
||||
<link rel="canonical" href="https://alanorth.github.io/cgspace-notes/2018-11/">
|
||||
|
||||
<title>November, 2018 | CGSpace Notes</title>
|
||||
|
||||
<!-- combined, minified CSS -->
|
||||
<link href="https://alanorth.github.io/cgspace-notes/css/style.css" rel="stylesheet" integrity="sha384-Upm5uY/SXdvbjuIGH6fBjF5vOYUr9DguqBskM+EQpLBzO9U+9fMVmWEt+TTlGrWQ" crossorigin="anonymous">
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
</head>
|
||||
|
||||
<body>
|
||||
|
||||
|
||||
<div class="blog-masthead">
|
||||
<div class="container">
|
||||
<nav class="nav blog-nav">
|
||||
<a class="nav-link " href="https://alanorth.github.io/cgspace-notes/">Home</a>
|
||||
</nav>
|
||||
</div>
|
||||
</div>
|
||||
|
||||
|
||||
|
||||
<header class="blog-header">
|
||||
<div class="container">
|
||||
<h1 class="blog-title"><a href="https://alanorth.github.io/cgspace-notes/" rel="home">CGSpace Notes</a></h1>
|
||||
<p class="lead blog-description">Documenting day-to-day work on the <a href="https://cgspace.cgiar.org">CGSpace</a> repository.</p>
|
||||
</div>
|
||||
</header>
|
||||
|
||||
|
||||
|
||||
<div class="container">
|
||||
<div class="row">
|
||||
<div class="col-sm-8 blog-main">
|
||||
|
||||
|
||||
|
||||
|
||||
<article class="blog-post">
|
||||
<header>
|
||||
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2018-11/">November, 2018</a></h2>
|
||||
<p class="blog-post-meta"><time datetime="2018-11-01T16:41:30+02:00">Thu Nov 01, 2018</time> by Alan Orth in
|
||||
|
||||
<i class="fa fa-tag" aria-hidden="true"></i> <a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
|
||||
|
||||
</p>
|
||||
</header>
|
||||
<h2 id="2018-11-01">2018-11-01</h2>
|
||||
|
||||
<ul>
|
||||
<li>Finalize AReS Phase I and Phase II ToRs</li>
|
||||
<li>Send a note about my <a href="https://github.com/ilri/dspace-statistics-api">dspace-statistics-api</a> to the dspace-tech mailing list</li>
|
||||
</ul>
|
||||
|
||||
<p></p>
|
||||
|
||||
<!-- vim: set sw=2 ts=2: -->
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
</article>
|
||||
|
||||
|
||||
|
||||
</div> <!-- /.blog-main -->
|
||||
|
||||
<aside class="col-sm-3 ml-auto blog-sidebar">
|
||||
|
||||
|
||||
|
||||
<section class="sidebar-module">
|
||||
<h4>Recent Posts</h4>
|
||||
<ol class="list-unstyled">
|
||||
|
||||
|
||||
<li><a href="/cgspace-notes/2018-11/">November, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-10/">October, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-09/">September, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
|
||||
|
||||
</ol>
|
||||
</section>
|
||||
|
||||
|
||||
|
||||
|
||||
<section class="sidebar-module">
|
||||
<h4>Links</h4>
|
||||
<ol class="list-unstyled">
|
||||
|
||||
<li><a href="https://cgspace.cgiar.org">CGSpace</a></li>
|
||||
|
||||
<li><a href="https://dspacetest.cgiar.org">DSpace Test</a></li>
|
||||
|
||||
<li><a href="https://github.com/ilri/DSpace">CGSpace @ GitHub</a></li>
|
||||
|
||||
</ol>
|
||||
</section>
|
||||
|
||||
</aside>
|
||||
|
||||
|
||||
</div> <!-- /.row -->
|
||||
</div> <!-- /.container -->
|
||||
|
||||
|
||||
|
||||
<footer class="blog-footer">
|
||||
<p>
|
||||
|
||||
Blog template created by <a href="https://twitter.com/mdo">@mdo</a>, ported to Hugo by <a href='https://twitter.com/mralanorth'>@mralanorth</a>.
|
||||
|
||||
</p>
|
||||
<p>
|
||||
<a href="#">Back to top</a>
|
||||
</p>
|
||||
</footer>
|
||||
|
||||
|
||||
</body>
|
||||
|
||||
</html>
|
||||
|
|
@ -85,6 +85,8 @@
|
|||
<ol class="list-unstyled">
|
||||
|
||||
|
||||
<li><a href="/cgspace-notes/2018-11/">November, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-10/">October, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-09/">September, 2018</a></li>
|
||||
|
|
@ -93,8 +95,6 @@
|
|||
|
||||
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
|
||||
|
||||
</ol>
|
||||
</section>
|
||||
|
||||
|
|
|
|||
|
|
@ -87,6 +87,31 @@
|
|||
|
||||
|
||||
|
||||
<article class="blog-post">
|
||||
<header>
|
||||
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2018-11/">November, 2018</a></h2>
|
||||
<p class="blog-post-meta"><time datetime="2018-11-01T16:41:30+02:00">Thu Nov 01, 2018</time> by Alan Orth in
|
||||
|
||||
<i class="fa fa-tag" aria-hidden="true"></i> <a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
|
||||
|
||||
</p>
|
||||
</header>
|
||||
<h2 id="2018-11-01">2018-11-01</h2>
|
||||
|
||||
<ul>
|
||||
<li>Finalize AReS Phase I and Phase II ToRs</li>
|
||||
<li>Send a note about my <a href="https://github.com/ilri/dspace-statistics-api">dspace-statistics-api</a> to the dspace-tech mailing list</li>
|
||||
</ul>
|
||||
|
||||
<p></p>
|
||||
<a href='https://alanorth.github.io/cgspace-notes/2018-11/'>Read more →</a>
|
||||
</article>
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
<article class="blog-post">
|
||||
<header>
|
||||
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2018-10/">October, 2018</a></h2>
|
||||
|
|
@ -96,7 +121,14 @@
|
|||
|
||||
</p>
|
||||
</header>
|
||||
2018-10-01 Phil Thornton got an ORCID identifier so we need to add it to the list on CGSpace and tag his existing items I created a GitHub issue to track this #389, because I’m super busy in Nairobi right now 2018-10-03 I see Moayad was busy collecting item views and downloads from CGSpace yesterday: # zcat --force /var/log/nginx/*.log /var/log/nginx/*.log.1 | grep -E "02/Oct/2018" | awk '{print $1} ' | sort | uniq -c | sort -n | tail -n 10 933 40.
|
||||
<h2 id="2018-10-01">2018-10-01</h2>
|
||||
|
||||
<ul>
|
||||
<li>Phil Thornton got an ORCID identifier so we need to add it to the list on CGSpace and tag his existing items</li>
|
||||
<li>I created a GitHub issue to track this <a href="https://github.com/ilri/DSpace/issues/389">#389</a>, because I’m super busy in Nairobi right now</li>
|
||||
</ul>
|
||||
|
||||
<p></p>
|
||||
<a href='https://alanorth.github.io/cgspace-notes/2018-10/'>Read more →</a>
|
||||
</article>
|
||||
|
||||
|
|
@ -355,102 +387,6 @@ sys 2m7.289s
|
|||
|
||||
|
||||
|
||||
|
||||
<article class="blog-post">
|
||||
<header>
|
||||
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2018-01/">January, 2018</a></h2>
|
||||
<p class="blog-post-meta"><time datetime="2018-01-02T08:35:54-08:00">Tue Jan 02, 2018</time> by Alan Orth in
|
||||
|
||||
<i class="fa fa-tag" aria-hidden="true"></i> <a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
|
||||
|
||||
</p>
|
||||
</header>
|
||||
<h2 id="2018-01-02">2018-01-02</h2>
|
||||
|
||||
<ul>
|
||||
<li>Uptime Robot noticed that CGSpace went down and up a few times last night, for a few minutes each time</li>
|
||||
<li>I didn’t get any load alerts from Linode and the REST and XMLUI logs don’t show anything out of the ordinary</li>
|
||||
<li>The nginx logs show HTTP 200s until <code>02/Jan/2018:11:27:17 +0000</code> when Uptime Robot got an HTTP 500</li>
|
||||
<li>In dspace.log around that time I see many errors like “Client closed the connection before file download was complete”</li>
|
||||
<li>And just before that I see this:</li>
|
||||
</ul>
|
||||
|
||||
<pre><code>Caused by: org.apache.tomcat.jdbc.pool.PoolExhaustedException: [http-bio-127.0.0.1-8443-exec-980] Timeout: Pool empty. Unable to fetch a connection in 5 seconds, none available[size:50; busy:50; idle:0; lastwait:5000].
|
||||
</code></pre>
|
||||
|
||||
<ul>
|
||||
<li>Ah hah! So the pool was actually empty!</li>
|
||||
<li>I need to increase that, let’s try to bump it up from 50 to 75</li>
|
||||
<li>After that one client got an HTTP 499 but then the rest were HTTP 200, so I don’t know what the hell Uptime Robot saw</li>
|
||||
<li>I notice this error quite a few times in dspace.log:</li>
|
||||
</ul>
|
||||
|
||||
<pre><code>2018-01-02 01:21:19,137 ERROR org.dspace.app.xmlui.aspect.discovery.SidebarFacetsTransformer @ Error while searching for sidebar facets
|
||||
org.dspace.discovery.SearchServiceException: org.apache.solr.search.SyntaxError: Cannot parse 'dateIssued_keyword:[1976+TO+1979]': Encountered " "]" "] "" at line 1, column 32.
|
||||
</code></pre>
|
||||
|
||||
<ul>
|
||||
<li>And there are many of these errors every day for the past month:</li>
|
||||
</ul>
|
||||
|
||||
<pre><code>$ grep -c "Error while searching for sidebar facets" dspace.log.*
|
||||
dspace.log.2017-11-21:4
|
||||
dspace.log.2017-11-22:1
|
||||
dspace.log.2017-11-23:4
|
||||
dspace.log.2017-11-24:11
|
||||
dspace.log.2017-11-25:0
|
||||
dspace.log.2017-11-26:1
|
||||
dspace.log.2017-11-27:7
|
||||
dspace.log.2017-11-28:21
|
||||
dspace.log.2017-11-29:31
|
||||
dspace.log.2017-11-30:15
|
||||
dspace.log.2017-12-01:15
|
||||
dspace.log.2017-12-02:20
|
||||
dspace.log.2017-12-03:38
|
||||
dspace.log.2017-12-04:65
|
||||
dspace.log.2017-12-05:43
|
||||
dspace.log.2017-12-06:72
|
||||
dspace.log.2017-12-07:27
|
||||
dspace.log.2017-12-08:15
|
||||
dspace.log.2017-12-09:29
|
||||
dspace.log.2017-12-10:35
|
||||
dspace.log.2017-12-11:20
|
||||
dspace.log.2017-12-12:44
|
||||
dspace.log.2017-12-13:36
|
||||
dspace.log.2017-12-14:59
|
||||
dspace.log.2017-12-15:104
|
||||
dspace.log.2017-12-16:53
|
||||
dspace.log.2017-12-17:66
|
||||
dspace.log.2017-12-18:83
|
||||
dspace.log.2017-12-19:101
|
||||
dspace.log.2017-12-20:74
|
||||
dspace.log.2017-12-21:55
|
||||
dspace.log.2017-12-22:66
|
||||
dspace.log.2017-12-23:50
|
||||
dspace.log.2017-12-24:85
|
||||
dspace.log.2017-12-25:62
|
||||
dspace.log.2017-12-26:49
|
||||
dspace.log.2017-12-27:30
|
||||
dspace.log.2017-12-28:54
|
||||
dspace.log.2017-12-29:68
|
||||
dspace.log.2017-12-30:89
|
||||
dspace.log.2017-12-31:53
|
||||
dspace.log.2018-01-01:45
|
||||
dspace.log.2018-01-02:34
|
||||
</code></pre>
|
||||
|
||||
<ul>
|
||||
<li>Danny wrote to ask for help renewing the wildcard ilri.org certificate and I advised that we should probably use Let’s Encrypt if it’s just a handful of domains</li>
|
||||
</ul>
|
||||
|
||||
<p></p>
|
||||
<a href='https://alanorth.github.io/cgspace-notes/2018-01/'>Read more →</a>
|
||||
</article>
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
<nav class="blog-pagination">
|
||||
|
||||
|
||||
|
|
@ -475,6 +411,8 @@ dspace.log.2018-01-02:34
|
|||
<ol class="list-unstyled">
|
||||
|
||||
|
||||
<li><a href="/cgspace-notes/2018-11/">November, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-10/">October, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-09/">September, 2018</a></li>
|
||||
|
|
@ -483,8 +421,6 @@ dspace.log.2018-01-02:34
|
|||
|
||||
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
|
||||
|
||||
</ol>
|
||||
</section>
|
||||
|
||||
|
|
|
|||
|
|
@ -107,6 +107,8 @@
|
|||
<ol class="list-unstyled">
|
||||
|
||||
|
||||
<li><a href="/cgspace-notes/2018-11/">November, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-10/">October, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-09/">September, 2018</a></li>
|
||||
|
|
@ -115,8 +117,6 @@
|
|||
|
||||
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
|
||||
|
||||
</ol>
|
||||
</section>
|
||||
|
||||
|
|
|
|||
|
|
@ -9,7 +9,7 @@
|
|||
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
|
||||
<meta property="og:type" content="website" />
|
||||
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/" />
|
||||
<meta property="og:updated_time" content="2017-12-01T13:53:54+03:00"/>
|
||||
<meta property="og:updated_time" content="2018-01-02T08:35:54-08:00"/>
|
||||
|
||||
<meta name="twitter:card" content="summary"/>
|
||||
<meta name="twitter:title" content="Categories"/>
|
||||
|
|
@ -28,7 +28,7 @@
|
|||
"@type": "Person",
|
||||
"name": "Alan Orth"
|
||||
},
|
||||
"dateModified": "2017-12-01T13:53:54+03:00",
|
||||
"dateModified": "2018-01-02T08:35:54-08:00",
|
||||
"keywords": "notes,notes,",
|
||||
"description": "Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
|
||||
}
|
||||
|
|
@ -89,6 +89,102 @@
|
|||
|
||||
|
||||
|
||||
<article class="blog-post">
|
||||
<header>
|
||||
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2018-01/">January, 2018</a></h2>
|
||||
<p class="blog-post-meta"><time datetime="2018-01-02T08:35:54-08:00">Tue Jan 02, 2018</time> by Alan Orth in
|
||||
|
||||
<i class="fa fa-tag" aria-hidden="true"></i> <a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
|
||||
|
||||
</p>
|
||||
</header>
|
||||
<h2 id="2018-01-02">2018-01-02</h2>
|
||||
|
||||
<ul>
|
||||
<li>Uptime Robot noticed that CGSpace went down and up a few times last night, for a few minutes each time</li>
|
||||
<li>I didn’t get any load alerts from Linode and the REST and XMLUI logs don’t show anything out of the ordinary</li>
|
||||
<li>The nginx logs show HTTP 200s until <code>02/Jan/2018:11:27:17 +0000</code> when Uptime Robot got an HTTP 500</li>
|
||||
<li>In dspace.log around that time I see many errors like “Client closed the connection before file download was complete”</li>
|
||||
<li>And just before that I see this:</li>
|
||||
</ul>
|
||||
|
||||
<pre><code>Caused by: org.apache.tomcat.jdbc.pool.PoolExhaustedException: [http-bio-127.0.0.1-8443-exec-980] Timeout: Pool empty. Unable to fetch a connection in 5 seconds, none available[size:50; busy:50; idle:0; lastwait:5000].
|
||||
</code></pre>
|
||||
|
||||
<ul>
|
||||
<li>Ah hah! So the pool was actually empty!</li>
|
||||
<li>I need to increase that, let’s try to bump it up from 50 to 75</li>
|
||||
<li>After that one client got an HTTP 499 but then the rest were HTTP 200, so I don’t know what the hell Uptime Robot saw</li>
|
||||
<li>I notice this error quite a few times in dspace.log:</li>
|
||||
</ul>
|
||||
|
||||
<pre><code>2018-01-02 01:21:19,137 ERROR org.dspace.app.xmlui.aspect.discovery.SidebarFacetsTransformer @ Error while searching for sidebar facets
|
||||
org.dspace.discovery.SearchServiceException: org.apache.solr.search.SyntaxError: Cannot parse 'dateIssued_keyword:[1976+TO+1979]': Encountered " "]" "] "" at line 1, column 32.
|
||||
</code></pre>
|
||||
|
||||
<ul>
|
||||
<li>And there are many of these errors every day for the past month:</li>
|
||||
</ul>
|
||||
|
||||
<pre><code>$ grep -c "Error while searching for sidebar facets" dspace.log.*
|
||||
dspace.log.2017-11-21:4
|
||||
dspace.log.2017-11-22:1
|
||||
dspace.log.2017-11-23:4
|
||||
dspace.log.2017-11-24:11
|
||||
dspace.log.2017-11-25:0
|
||||
dspace.log.2017-11-26:1
|
||||
dspace.log.2017-11-27:7
|
||||
dspace.log.2017-11-28:21
|
||||
dspace.log.2017-11-29:31
|
||||
dspace.log.2017-11-30:15
|
||||
dspace.log.2017-12-01:15
|
||||
dspace.log.2017-12-02:20
|
||||
dspace.log.2017-12-03:38
|
||||
dspace.log.2017-12-04:65
|
||||
dspace.log.2017-12-05:43
|
||||
dspace.log.2017-12-06:72
|
||||
dspace.log.2017-12-07:27
|
||||
dspace.log.2017-12-08:15
|
||||
dspace.log.2017-12-09:29
|
||||
dspace.log.2017-12-10:35
|
||||
dspace.log.2017-12-11:20
|
||||
dspace.log.2017-12-12:44
|
||||
dspace.log.2017-12-13:36
|
||||
dspace.log.2017-12-14:59
|
||||
dspace.log.2017-12-15:104
|
||||
dspace.log.2017-12-16:53
|
||||
dspace.log.2017-12-17:66
|
||||
dspace.log.2017-12-18:83
|
||||
dspace.log.2017-12-19:101
|
||||
dspace.log.2017-12-20:74
|
||||
dspace.log.2017-12-21:55
|
||||
dspace.log.2017-12-22:66
|
||||
dspace.log.2017-12-23:50
|
||||
dspace.log.2017-12-24:85
|
||||
dspace.log.2017-12-25:62
|
||||
dspace.log.2017-12-26:49
|
||||
dspace.log.2017-12-27:30
|
||||
dspace.log.2017-12-28:54
|
||||
dspace.log.2017-12-29:68
|
||||
dspace.log.2017-12-30:89
|
||||
dspace.log.2017-12-31:53
|
||||
dspace.log.2018-01-01:45
|
||||
dspace.log.2018-01-02:34
|
||||
</code></pre>
|
||||
|
||||
<ul>
|
||||
<li>Danny wrote to ask for help renewing the wildcard ilri.org certificate and I advised that we should probably use Let’s Encrypt if it’s just a handful of domains</li>
|
||||
</ul>
|
||||
|
||||
<p></p>
|
||||
<a href='https://alanorth.github.io/cgspace-notes/2018-01/'>Read more →</a>
|
||||
</article>
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
<article class="blog-post">
|
||||
<header>
|
||||
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2017-12/">December, 2017</a></h2>
|
||||
|
|
@ -349,41 +445,6 @@ COPY 54701
|
|||
|
||||
|
||||
|
||||
|
||||
<article class="blog-post">
|
||||
<header>
|
||||
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2017-04/">April, 2017</a></h2>
|
||||
<p class="blog-post-meta"><time datetime="2017-04-02T17:08:52+02:00">Sun Apr 02, 2017</time> by Alan Orth in
|
||||
|
||||
<i class="fa fa-tag" aria-hidden="true"></i> <a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
|
||||
|
||||
</p>
|
||||
</header>
|
||||
<h2 id="2017-04-02">2017-04-02</h2>
|
||||
|
||||
<ul>
|
||||
<li>Merge one change to CCAFS flagships that I had forgotten to remove last month (“MANAGING CLIMATE RISK”): <a href="https://github.com/ilri/DSpace/pull/317">https://github.com/ilri/DSpace/pull/317</a></li>
|
||||
<li>Quick proof-of-concept hack to add <code>dc.rights</code> to the input form, including some inline instructions/hints:</li>
|
||||
</ul>
|
||||
|
||||
<p><img src="/cgspace-notes/2017/04/dc-rights.png" alt="dc.rights in the submission form" /></p>
|
||||
|
||||
<ul>
|
||||
<li>Remove redundant/duplicate text in the DSpace submission license</li>
|
||||
<li>Testing the CMYK patch on a collection with 650 items:</li>
|
||||
</ul>
|
||||
|
||||
<pre><code>$ [dspace]/bin/dspace filter-media -f -i 10568/16498 -p "ImageMagick PDF Thumbnail" -v >& /tmp/filter-media-cmyk.txt
|
||||
</code></pre>
|
||||
|
||||
<p></p>
|
||||
<a href='https://alanorth.github.io/cgspace-notes/2017-04/'>Read more →</a>
|
||||
</article>
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
<nav class="blog-pagination">
|
||||
|
||||
<a class="btn btn-outline-primary" href="/cgspace-notes/categories/" rel="prev" role="button">Previous page</a>
|
||||
|
|
@ -408,6 +469,8 @@ COPY 54701
|
|||
<ol class="list-unstyled">
|
||||
|
||||
|
||||
<li><a href="/cgspace-notes/2018-11/">November, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-10/">October, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-09/">September, 2018</a></li>
|
||||
|
|
@ -416,8 +479,6 @@ COPY 54701
|
|||
|
||||
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
|
||||
|
||||
</ol>
|
||||
</section>
|
||||
|
||||
|
|
|
|||
|
|
@ -9,7 +9,7 @@
|
|||
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
|
||||
<meta property="og:type" content="website" />
|
||||
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/" />
|
||||
<meta property="og:updated_time" content="2017-03-01T17:08:52+02:00"/>
|
||||
<meta property="og:updated_time" content="2017-04-02T17:08:52+02:00"/>
|
||||
|
||||
<meta name="twitter:card" content="summary"/>
|
||||
<meta name="twitter:title" content="Categories"/>
|
||||
|
|
@ -28,7 +28,7 @@
|
|||
"@type": "Person",
|
||||
"name": "Alan Orth"
|
||||
},
|
||||
"dateModified": "2017-03-01T17:08:52+02:00",
|
||||
"dateModified": "2017-04-02T17:08:52+02:00",
|
||||
"keywords": "notes,notes,",
|
||||
"description": "Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
|
||||
}
|
||||
|
|
@ -89,6 +89,41 @@
|
|||
|
||||
|
||||
|
||||
<article class="blog-post">
|
||||
<header>
|
||||
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2017-04/">April, 2017</a></h2>
|
||||
<p class="blog-post-meta"><time datetime="2017-04-02T17:08:52+02:00">Sun Apr 02, 2017</time> by Alan Orth in
|
||||
|
||||
<i class="fa fa-tag" aria-hidden="true"></i> <a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
|
||||
|
||||
</p>
|
||||
</header>
|
||||
<h2 id="2017-04-02">2017-04-02</h2>
|
||||
|
||||
<ul>
|
||||
<li>Merge one change to CCAFS flagships that I had forgotten to remove last month (“MANAGING CLIMATE RISK”): <a href="https://github.com/ilri/DSpace/pull/317">https://github.com/ilri/DSpace/pull/317</a></li>
|
||||
<li>Quick proof-of-concept hack to add <code>dc.rights</code> to the input form, including some inline instructions/hints:</li>
|
||||
</ul>
|
||||
|
||||
<p><img src="/cgspace-notes/2017/04/dc-rights.png" alt="dc.rights in the submission form" /></p>
|
||||
|
||||
<ul>
|
||||
<li>Remove redundant/duplicate text in the DSpace submission license</li>
|
||||
<li>Testing the CMYK patch on a collection with 650 items:</li>
|
||||
</ul>
|
||||
|
||||
<pre><code>$ [dspace]/bin/dspace filter-media -f -i 10568/16498 -p "ImageMagick PDF Thumbnail" -v >& /tmp/filter-media-cmyk.txt
|
||||
</code></pre>
|
||||
|
||||
<p></p>
|
||||
<a href='https://alanorth.github.io/cgspace-notes/2017-04/'>Read more →</a>
|
||||
</article>
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
<article class="blog-post">
|
||||
<header>
|
||||
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2017-03/">March, 2017</a></h2>
|
||||
|
|
@ -395,35 +430,6 @@ dspacetest=# select text_value from metadatavalue where metadata_field_id=3 and
|
|||
|
||||
|
||||
|
||||
|
||||
<article class="blog-post">
|
||||
<header>
|
||||
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-06/">June, 2016</a></h2>
|
||||
<p class="blog-post-meta"><time datetime="2016-06-01T10:53:00+03:00">Wed Jun 01, 2016</time> by Alan Orth in
|
||||
|
||||
<i class="fa fa-tag" aria-hidden="true"></i> <a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
|
||||
|
||||
</p>
|
||||
</header>
|
||||
<h2 id="2016-06-01">2016-06-01</h2>
|
||||
|
||||
<ul>
|
||||
<li>Experimenting with IFPRI OAI (we want to harvest their publications)</li>
|
||||
<li>After reading the <a href="https://www.oclc.org/support/services/contentdm/help/server-admin-help/oai-support.en.html">ContentDM documentation</a> I found IFPRI’s OAI endpoint: <a href="http://ebrary.ifpri.org/oai/oai.php">http://ebrary.ifpri.org/oai/oai.php</a></li>
|
||||
<li>After reading the <a href="https://www.openarchives.org/OAI/openarchivesprotocol.html">OAI documentation</a> and testing with an <a href="http://validator.oaipmh.com/">OAI validator</a> I found out how to get their publications</li>
|
||||
<li>This is their publications set: <a href="http://ebrary.ifpri.org/oai/oai.php?verb=ListRecords&from=2016-01-01&set=p15738coll2&metadataPrefix=oai_dc">http://ebrary.ifpri.org/oai/oai.php?verb=ListRecords&from=2016-01-01&set=p15738coll2&metadataPrefix=oai_dc</a></li>
|
||||
<li>You can see the others by using the OAI <code>ListSets</code> verb: <a href="http://ebrary.ifpri.org/oai/oai.php?verb=ListSets">http://ebrary.ifpri.org/oai/oai.php?verb=ListSets</a></li>
|
||||
<li>Working on second phase of metadata migration, looks like this will work for moving CPWF-specific data in <code>dc.identifier.fund</code> to <code>cg.identifier.cpwfproject</code> and then the rest to <code>dc.description.sponsorship</code></li>
|
||||
</ul>
|
||||
|
||||
<p></p>
|
||||
<a href='https://alanorth.github.io/cgspace-notes/2016-06/'>Read more →</a>
|
||||
</article>
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
<nav class="blog-pagination">
|
||||
|
||||
<a class="btn btn-outline-primary" href="/cgspace-notes/categories/page/2/" rel="prev" role="button">Previous page</a>
|
||||
|
|
@ -448,6 +454,8 @@ dspacetest=# select text_value from metadatavalue where metadata_field_id=3 and
|
|||
<ol class="list-unstyled">
|
||||
|
||||
|
||||
<li><a href="/cgspace-notes/2018-11/">November, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-10/">October, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-09/">September, 2018</a></li>
|
||||
|
|
@ -456,8 +464,6 @@ dspacetest=# select text_value from metadatavalue where metadata_field_id=3 and
|
|||
|
||||
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
|
||||
|
||||
</ol>
|
||||
</section>
|
||||
|
||||
|
|
|
|||
|
|
@ -9,7 +9,7 @@
|
|||
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
|
||||
<meta property="og:type" content="website" />
|
||||
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/" />
|
||||
<meta property="og:updated_time" content="2016-05-01T23:06:00+03:00"/>
|
||||
<meta property="og:updated_time" content="2016-06-01T10:53:00+03:00"/>
|
||||
|
||||
<meta name="twitter:card" content="summary"/>
|
||||
<meta name="twitter:title" content="Categories"/>
|
||||
|
|
@ -28,7 +28,7 @@
|
|||
"@type": "Person",
|
||||
"name": "Alan Orth"
|
||||
},
|
||||
"dateModified": "2016-05-01T23:06:00+03:00",
|
||||
"dateModified": "2016-06-01T10:53:00+03:00",
|
||||
"keywords": "notes,notes,",
|
||||
"description": "Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
|
||||
}
|
||||
|
|
@ -89,6 +89,35 @@
|
|||
|
||||
|
||||
|
||||
<article class="blog-post">
|
||||
<header>
|
||||
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-06/">June, 2016</a></h2>
|
||||
<p class="blog-post-meta"><time datetime="2016-06-01T10:53:00+03:00">Wed Jun 01, 2016</time> by Alan Orth in
|
||||
|
||||
<i class="fa fa-tag" aria-hidden="true"></i> <a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
|
||||
|
||||
</p>
|
||||
</header>
|
||||
<h2 id="2016-06-01">2016-06-01</h2>
|
||||
|
||||
<ul>
|
||||
<li>Experimenting with IFPRI OAI (we want to harvest their publications)</li>
|
||||
<li>After reading the <a href="https://www.oclc.org/support/services/contentdm/help/server-admin-help/oai-support.en.html">ContentDM documentation</a> I found IFPRI’s OAI endpoint: <a href="http://ebrary.ifpri.org/oai/oai.php">http://ebrary.ifpri.org/oai/oai.php</a></li>
|
||||
<li>After reading the <a href="https://www.openarchives.org/OAI/openarchivesprotocol.html">OAI documentation</a> and testing with an <a href="http://validator.oaipmh.com/">OAI validator</a> I found out how to get their publications</li>
|
||||
<li>This is their publications set: <a href="http://ebrary.ifpri.org/oai/oai.php?verb=ListRecords&from=2016-01-01&set=p15738coll2&metadataPrefix=oai_dc">http://ebrary.ifpri.org/oai/oai.php?verb=ListRecords&from=2016-01-01&set=p15738coll2&metadataPrefix=oai_dc</a></li>
|
||||
<li>You can see the others by using the OAI <code>ListSets</code> verb: <a href="http://ebrary.ifpri.org/oai/oai.php?verb=ListSets">http://ebrary.ifpri.org/oai/oai.php?verb=ListSets</a></li>
|
||||
<li>Working on second phase of metadata migration, looks like this will work for moving CPWF-specific data in <code>dc.identifier.fund</code> to <code>cg.identifier.cpwfproject</code> and then the rest to <code>dc.description.sponsorship</code></li>
|
||||
</ul>
|
||||
|
||||
<p></p>
|
||||
<a href='https://alanorth.github.io/cgspace-notes/2016-06/'>Read more →</a>
|
||||
</article>
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
<article class="blog-post">
|
||||
<header>
|
||||
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-05/">May, 2016</a></h2>
|
||||
|
|
@ -296,7 +325,7 @@
|
|||
<article class="blog-post">
|
||||
<header>
|
||||
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/posts/">Posts</a></h2>
|
||||
<p class="blog-post-meta"><time datetime="2018-10-01T22:31:54+03:00">Mon Oct 01, 2018</time> by Alan Orth</p>
|
||||
<p class="blog-post-meta"><time datetime="2018-11-01T16:41:30+02:00">Thu Nov 01, 2018</time> by Alan Orth</p>
|
||||
</header>
|
||||
|
||||
<a href='https://alanorth.github.io/cgspace-notes/posts/'>Read more →</a>
|
||||
|
|
@ -330,6 +359,8 @@
|
|||
<ol class="list-unstyled">
|
||||
|
||||
|
||||
<li><a href="/cgspace-notes/2018-11/">November, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-10/">October, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-09/">September, 2018</a></li>
|
||||
|
|
@ -338,8 +369,6 @@
|
|||
|
||||
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
|
||||
|
||||
</ol>
|
||||
</section>
|
||||
|
||||
|
|
|
|||
|
|
@ -325,6 +325,8 @@ dspace=# select setval('handle_seq',86873);
|
|||
<ol class="list-unstyled">
|
||||
|
||||
|
||||
<li><a href="/cgspace-notes/2018-11/">November, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-10/">October, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-09/">September, 2018</a></li>
|
||||
|
|
@ -333,8 +335,6 @@ dspace=# select setval('handle_seq',86873);
|
|||
|
||||
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
|
||||
|
||||
</ol>
|
||||
</section>
|
||||
|
||||
|
|
|
|||
138
docs/index.html
138
docs/index.html
|
|
@ -9,7 +9,7 @@
|
|||
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
|
||||
<meta property="og:type" content="website" />
|
||||
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />
|
||||
<meta property="og:updated_time" content="2018-10-01T22:31:54+03:00"/>
|
||||
<meta property="og:updated_time" content="2018-11-01T16:41:30+02:00"/>
|
||||
|
||||
<meta name="twitter:card" content="summary"/>
|
||||
<meta name="twitter:title" content="CGSpace Notes"/>
|
||||
|
|
@ -28,7 +28,7 @@
|
|||
"@type": "Person",
|
||||
"name": "Alan Orth"
|
||||
},
|
||||
"dateModified": "2018-10-01T22:31:54+03:00",
|
||||
"dateModified": "2018-11-01T16:41:30+02:00",
|
||||
"keywords": "notes,notes,",
|
||||
"description": "Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
|
||||
}
|
||||
|
|
@ -89,6 +89,31 @@
|
|||
|
||||
|
||||
|
||||
<article class="blog-post">
|
||||
<header>
|
||||
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2018-11/">November, 2018</a></h2>
|
||||
<p class="blog-post-meta"><time datetime="2018-11-01T16:41:30+02:00">Thu Nov 01, 2018</time> by Alan Orth in
|
||||
|
||||
<i class="fa fa-tag" aria-hidden="true"></i> <a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
|
||||
|
||||
</p>
|
||||
</header>
|
||||
<h2 id="2018-11-01">2018-11-01</h2>
|
||||
|
||||
<ul>
|
||||
<li>Finalize AReS Phase I and Phase II ToRs</li>
|
||||
<li>Send a note about my <a href="https://github.com/ilri/dspace-statistics-api">dspace-statistics-api</a> to the dspace-tech mailing list</li>
|
||||
</ul>
|
||||
|
||||
<p></p>
|
||||
<a href='https://alanorth.github.io/cgspace-notes/2018-11/'>Read more →</a>
|
||||
</article>
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
<article class="blog-post">
|
||||
<header>
|
||||
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2018-10/">October, 2018</a></h2>
|
||||
|
|
@ -98,7 +123,14 @@
|
|||
|
||||
</p>
|
||||
</header>
|
||||
2018-10-01 Phil Thornton got an ORCID identifier so we need to add it to the list on CGSpace and tag his existing items I created a GitHub issue to track this #389, because I’m super busy in Nairobi right now 2018-10-03 I see Moayad was busy collecting item views and downloads from CGSpace yesterday: # zcat --force /var/log/nginx/*.log /var/log/nginx/*.log.1 | grep -E "02/Oct/2018" | awk '{print $1} ' | sort | uniq -c | sort -n | tail -n 10 933 40.
|
||||
<h2 id="2018-10-01">2018-10-01</h2>
|
||||
|
||||
<ul>
|
||||
<li>Phil Thornton got an ORCID identifier so we need to add it to the list on CGSpace and tag his existing items</li>
|
||||
<li>I created a GitHub issue to track this <a href="https://github.com/ilri/DSpace/issues/389">#389</a>, because I’m super busy in Nairobi right now</li>
|
||||
</ul>
|
||||
|
||||
<p></p>
|
||||
<a href='https://alanorth.github.io/cgspace-notes/2018-10/'>Read more →</a>
|
||||
</article>
|
||||
|
||||
|
|
@ -357,102 +389,6 @@ sys 2m7.289s
|
|||
|
||||
|
||||
|
||||
|
||||
<article class="blog-post">
|
||||
<header>
|
||||
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2018-01/">January, 2018</a></h2>
|
||||
<p class="blog-post-meta"><time datetime="2018-01-02T08:35:54-08:00">Tue Jan 02, 2018</time> by Alan Orth in
|
||||
|
||||
<i class="fa fa-tag" aria-hidden="true"></i> <a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
|
||||
|
||||
</p>
|
||||
</header>
|
||||
<h2 id="2018-01-02">2018-01-02</h2>
|
||||
|
||||
<ul>
|
||||
<li>Uptime Robot noticed that CGSpace went down and up a few times last night, for a few minutes each time</li>
|
||||
<li>I didn’t get any load alerts from Linode and the REST and XMLUI logs don’t show anything out of the ordinary</li>
|
||||
<li>The nginx logs show HTTP 200s until <code>02/Jan/2018:11:27:17 +0000</code> when Uptime Robot got an HTTP 500</li>
|
||||
<li>In dspace.log around that time I see many errors like “Client closed the connection before file download was complete”</li>
|
||||
<li>And just before that I see this:</li>
|
||||
</ul>
|
||||
|
||||
<pre><code>Caused by: org.apache.tomcat.jdbc.pool.PoolExhaustedException: [http-bio-127.0.0.1-8443-exec-980] Timeout: Pool empty. Unable to fetch a connection in 5 seconds, none available[size:50; busy:50; idle:0; lastwait:5000].
|
||||
</code></pre>
|
||||
|
||||
<ul>
|
||||
<li>Ah hah! So the pool was actually empty!</li>
|
||||
<li>I need to increase that, let’s try to bump it up from 50 to 75</li>
|
||||
<li>After that one client got an HTTP 499 but then the rest were HTTP 200, so I don’t know what the hell Uptime Robot saw</li>
|
||||
<li>I notice this error quite a few times in dspace.log:</li>
|
||||
</ul>
|
||||
|
||||
<pre><code>2018-01-02 01:21:19,137 ERROR org.dspace.app.xmlui.aspect.discovery.SidebarFacetsTransformer @ Error while searching for sidebar facets
|
||||
org.dspace.discovery.SearchServiceException: org.apache.solr.search.SyntaxError: Cannot parse 'dateIssued_keyword:[1976+TO+1979]': Encountered " "]" "] "" at line 1, column 32.
|
||||
</code></pre>
|
||||
|
||||
<ul>
|
||||
<li>And there are many of these errors every day for the past month:</li>
|
||||
</ul>
|
||||
|
||||
<pre><code>$ grep -c "Error while searching for sidebar facets" dspace.log.*
|
||||
dspace.log.2017-11-21:4
|
||||
dspace.log.2017-11-22:1
|
||||
dspace.log.2017-11-23:4
|
||||
dspace.log.2017-11-24:11
|
||||
dspace.log.2017-11-25:0
|
||||
dspace.log.2017-11-26:1
|
||||
dspace.log.2017-11-27:7
|
||||
dspace.log.2017-11-28:21
|
||||
dspace.log.2017-11-29:31
|
||||
dspace.log.2017-11-30:15
|
||||
dspace.log.2017-12-01:15
|
||||
dspace.log.2017-12-02:20
|
||||
dspace.log.2017-12-03:38
|
||||
dspace.log.2017-12-04:65
|
||||
dspace.log.2017-12-05:43
|
||||
dspace.log.2017-12-06:72
|
||||
dspace.log.2017-12-07:27
|
||||
dspace.log.2017-12-08:15
|
||||
dspace.log.2017-12-09:29
|
||||
dspace.log.2017-12-10:35
|
||||
dspace.log.2017-12-11:20
|
||||
dspace.log.2017-12-12:44
|
||||
dspace.log.2017-12-13:36
|
||||
dspace.log.2017-12-14:59
|
||||
dspace.log.2017-12-15:104
|
||||
dspace.log.2017-12-16:53
|
||||
dspace.log.2017-12-17:66
|
||||
dspace.log.2017-12-18:83
|
||||
dspace.log.2017-12-19:101
|
||||
dspace.log.2017-12-20:74
|
||||
dspace.log.2017-12-21:55
|
||||
dspace.log.2017-12-22:66
|
||||
dspace.log.2017-12-23:50
|
||||
dspace.log.2017-12-24:85
|
||||
dspace.log.2017-12-25:62
|
||||
dspace.log.2017-12-26:49
|
||||
dspace.log.2017-12-27:30
|
||||
dspace.log.2017-12-28:54
|
||||
dspace.log.2017-12-29:68
|
||||
dspace.log.2017-12-30:89
|
||||
dspace.log.2017-12-31:53
|
||||
dspace.log.2018-01-01:45
|
||||
dspace.log.2018-01-02:34
|
||||
</code></pre>
|
||||
|
||||
<ul>
|
||||
<li>Danny wrote to ask for help renewing the wildcard ilri.org certificate and I advised that we should probably use Let’s Encrypt if it’s just a handful of domains</li>
|
||||
</ul>
|
||||
|
||||
<p></p>
|
||||
<a href='https://alanorth.github.io/cgspace-notes/2018-01/'>Read more →</a>
|
||||
</article>
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
<nav class="blog-pagination">
|
||||
|
||||
|
||||
|
|
@ -477,6 +413,8 @@ dspace.log.2018-01-02:34
|
|||
<ol class="list-unstyled">
|
||||
|
||||
|
||||
<li><a href="/cgspace-notes/2018-11/">November, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-10/">October, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-09/">September, 2018</a></li>
|
||||
|
|
@ -485,8 +423,6 @@ dspace.log.2018-01-02:34
|
|||
|
||||
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
|
||||
|
||||
</ol>
|
||||
</section>
|
||||
|
||||
|
|
|
|||
|
|
@ -6,18 +6,41 @@
|
|||
<description>Recent content on CGSpace Notes</description>
|
||||
<generator>Hugo -- gohugo.io</generator>
|
||||
<language>en-us</language>
|
||||
<lastBuildDate>Mon, 01 Oct 2018 22:31:54 +0300</lastBuildDate>
|
||||
<lastBuildDate>Thu, 01 Nov 2018 16:41:30 +0200</lastBuildDate>
|
||||
|
||||
<atom:link href="https://alanorth.github.io/cgspace-notes/index.xml" rel="self" type="application/rss+xml" />
|
||||
|
||||
|
||||
<item>
|
||||
<title>November, 2018</title>
|
||||
<link>https://alanorth.github.io/cgspace-notes/2018-11/</link>
|
||||
<pubDate>Thu, 01 Nov 2018 16:41:30 +0200</pubDate>
|
||||
|
||||
<guid>https://alanorth.github.io/cgspace-notes/2018-11/</guid>
|
||||
<description><h2 id="2018-11-01">2018-11-01</h2>
|
||||
|
||||
<ul>
|
||||
<li>Finalize AReS Phase I and Phase II ToRs</li>
|
||||
<li>Send a note about my <a href="https://github.com/ilri/dspace-statistics-api">dspace-statistics-api</a> to the dspace-tech mailing list</li>
|
||||
</ul>
|
||||
|
||||
<p></p></description>
|
||||
</item>
|
||||
|
||||
<item>
|
||||
<title>October, 2018</title>
|
||||
<link>https://alanorth.github.io/cgspace-notes/2018-10/</link>
|
||||
<pubDate>Mon, 01 Oct 2018 22:31:54 +0300</pubDate>
|
||||
|
||||
<guid>https://alanorth.github.io/cgspace-notes/2018-10/</guid>
|
||||
<description>2018-10-01 Phil Thornton got an ORCID identifier so we need to add it to the list on CGSpace and tag his existing items I created a GitHub issue to track this #389, because I&rsquo;m super busy in Nairobi right now 2018-10-03 I see Moayad was busy collecting item views and downloads from CGSpace yesterday: # zcat --force /var/log/nginx/*.log /var/log/nginx/*.log.1 | grep -E &quot;02/Oct/2018&quot; | awk '{print $1} ' | sort | uniq -c | sort -n | tail -n 10 933 40.</description>
|
||||
<description><h2 id="2018-10-01">2018-10-01</h2>
|
||||
|
||||
<ul>
|
||||
<li>Phil Thornton got an ORCID identifier so we need to add it to the list on CGSpace and tag his existing items</li>
|
||||
<li>I created a GitHub issue to track this <a href="https://github.com/ilri/DSpace/issues/389">#389</a>, because I&rsquo;m super busy in Nairobi right now</li>
|
||||
</ul>
|
||||
|
||||
<p></p></description>
|
||||
</item>
|
||||
|
||||
<item>
|
||||
|
|
|
|||
|
|
@ -9,7 +9,7 @@
|
|||
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
|
||||
<meta property="og:type" content="website" />
|
||||
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />
|
||||
<meta property="og:updated_time" content="2017-12-01T13:53:54+03:00"/>
|
||||
<meta property="og:updated_time" content="2018-01-02T08:35:54-08:00"/>
|
||||
|
||||
<meta name="twitter:card" content="summary"/>
|
||||
<meta name="twitter:title" content="CGSpace Notes"/>
|
||||
|
|
@ -28,7 +28,7 @@
|
|||
"@type": "Person",
|
||||
"name": "Alan Orth"
|
||||
},
|
||||
"dateModified": "2017-12-01T13:53:54+03:00",
|
||||
"dateModified": "2018-01-02T08:35:54-08:00",
|
||||
"keywords": "notes,notes,",
|
||||
"description": "Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
|
||||
}
|
||||
|
|
@ -89,6 +89,102 @@
|
|||
|
||||
|
||||
|
||||
<article class="blog-post">
|
||||
<header>
|
||||
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2018-01/">January, 2018</a></h2>
|
||||
<p class="blog-post-meta"><time datetime="2018-01-02T08:35:54-08:00">Tue Jan 02, 2018</time> by Alan Orth in
|
||||
|
||||
<i class="fa fa-tag" aria-hidden="true"></i> <a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
|
||||
|
||||
</p>
|
||||
</header>
|
||||
<h2 id="2018-01-02">2018-01-02</h2>
|
||||
|
||||
<ul>
|
||||
<li>Uptime Robot noticed that CGSpace went down and up a few times last night, for a few minutes each time</li>
|
||||
<li>I didn’t get any load alerts from Linode and the REST and XMLUI logs don’t show anything out of the ordinary</li>
|
||||
<li>The nginx logs show HTTP 200s until <code>02/Jan/2018:11:27:17 +0000</code> when Uptime Robot got an HTTP 500</li>
|
||||
<li>In dspace.log around that time I see many errors like “Client closed the connection before file download was complete”</li>
|
||||
<li>And just before that I see this:</li>
|
||||
</ul>
|
||||
|
||||
<pre><code>Caused by: org.apache.tomcat.jdbc.pool.PoolExhaustedException: [http-bio-127.0.0.1-8443-exec-980] Timeout: Pool empty. Unable to fetch a connection in 5 seconds, none available[size:50; busy:50; idle:0; lastwait:5000].
|
||||
</code></pre>
|
||||
|
||||
<ul>
|
||||
<li>Ah hah! So the pool was actually empty!</li>
|
||||
<li>I need to increase that, let’s try to bump it up from 50 to 75</li>
|
||||
<li>After that one client got an HTTP 499 but then the rest were HTTP 200, so I don’t know what the hell Uptime Robot saw</li>
|
||||
<li>I notice this error quite a few times in dspace.log:</li>
|
||||
</ul>
|
||||
|
||||
<pre><code>2018-01-02 01:21:19,137 ERROR org.dspace.app.xmlui.aspect.discovery.SidebarFacetsTransformer @ Error while searching for sidebar facets
|
||||
org.dspace.discovery.SearchServiceException: org.apache.solr.search.SyntaxError: Cannot parse 'dateIssued_keyword:[1976+TO+1979]': Encountered " "]" "] "" at line 1, column 32.
|
||||
</code></pre>
|
||||
|
||||
<ul>
|
||||
<li>And there are many of these errors every day for the past month:</li>
|
||||
</ul>
|
||||
|
||||
<pre><code>$ grep -c "Error while searching for sidebar facets" dspace.log.*
|
||||
dspace.log.2017-11-21:4
|
||||
dspace.log.2017-11-22:1
|
||||
dspace.log.2017-11-23:4
|
||||
dspace.log.2017-11-24:11
|
||||
dspace.log.2017-11-25:0
|
||||
dspace.log.2017-11-26:1
|
||||
dspace.log.2017-11-27:7
|
||||
dspace.log.2017-11-28:21
|
||||
dspace.log.2017-11-29:31
|
||||
dspace.log.2017-11-30:15
|
||||
dspace.log.2017-12-01:15
|
||||
dspace.log.2017-12-02:20
|
||||
dspace.log.2017-12-03:38
|
||||
dspace.log.2017-12-04:65
|
||||
dspace.log.2017-12-05:43
|
||||
dspace.log.2017-12-06:72
|
||||
dspace.log.2017-12-07:27
|
||||
dspace.log.2017-12-08:15
|
||||
dspace.log.2017-12-09:29
|
||||
dspace.log.2017-12-10:35
|
||||
dspace.log.2017-12-11:20
|
||||
dspace.log.2017-12-12:44
|
||||
dspace.log.2017-12-13:36
|
||||
dspace.log.2017-12-14:59
|
||||
dspace.log.2017-12-15:104
|
||||
dspace.log.2017-12-16:53
|
||||
dspace.log.2017-12-17:66
|
||||
dspace.log.2017-12-18:83
|
||||
dspace.log.2017-12-19:101
|
||||
dspace.log.2017-12-20:74
|
||||
dspace.log.2017-12-21:55
|
||||
dspace.log.2017-12-22:66
|
||||
dspace.log.2017-12-23:50
|
||||
dspace.log.2017-12-24:85
|
||||
dspace.log.2017-12-25:62
|
||||
dspace.log.2017-12-26:49
|
||||
dspace.log.2017-12-27:30
|
||||
dspace.log.2017-12-28:54
|
||||
dspace.log.2017-12-29:68
|
||||
dspace.log.2017-12-30:89
|
||||
dspace.log.2017-12-31:53
|
||||
dspace.log.2018-01-01:45
|
||||
dspace.log.2018-01-02:34
|
||||
</code></pre>
|
||||
|
||||
<ul>
|
||||
<li>Danny wrote to ask for help renewing the wildcard ilri.org certificate and I advised that we should probably use Let’s Encrypt if it’s just a handful of domains</li>
|
||||
</ul>
|
||||
|
||||
<p></p>
|
||||
<a href='https://alanorth.github.io/cgspace-notes/2018-01/'>Read more →</a>
|
||||
</article>
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
<article class="blog-post">
|
||||
<header>
|
||||
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2017-12/">December, 2017</a></h2>
|
||||
|
|
@ -349,41 +445,6 @@ COPY 54701
|
|||
|
||||
|
||||
|
||||
|
||||
<article class="blog-post">
|
||||
<header>
|
||||
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2017-04/">April, 2017</a></h2>
|
||||
<p class="blog-post-meta"><time datetime="2017-04-02T17:08:52+02:00">Sun Apr 02, 2017</time> by Alan Orth in
|
||||
|
||||
<i class="fa fa-tag" aria-hidden="true"></i> <a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
|
||||
|
||||
</p>
|
||||
</header>
|
||||
<h2 id="2017-04-02">2017-04-02</h2>
|
||||
|
||||
<ul>
|
||||
<li>Merge one change to CCAFS flagships that I had forgotten to remove last month (“MANAGING CLIMATE RISK”): <a href="https://github.com/ilri/DSpace/pull/317">https://github.com/ilri/DSpace/pull/317</a></li>
|
||||
<li>Quick proof-of-concept hack to add <code>dc.rights</code> to the input form, including some inline instructions/hints:</li>
|
||||
</ul>
|
||||
|
||||
<p><img src="/cgspace-notes/2017/04/dc-rights.png" alt="dc.rights in the submission form" /></p>
|
||||
|
||||
<ul>
|
||||
<li>Remove redundant/duplicate text in the DSpace submission license</li>
|
||||
<li>Testing the CMYK patch on a collection with 650 items:</li>
|
||||
</ul>
|
||||
|
||||
<pre><code>$ [dspace]/bin/dspace filter-media -f -i 10568/16498 -p "ImageMagick PDF Thumbnail" -v >& /tmp/filter-media-cmyk.txt
|
||||
</code></pre>
|
||||
|
||||
<p></p>
|
||||
<a href='https://alanorth.github.io/cgspace-notes/2017-04/'>Read more →</a>
|
||||
</article>
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
<nav class="blog-pagination">
|
||||
|
||||
<a class="btn btn-outline-primary" href="/cgspace-notes/" rel="prev" role="button">Previous page</a>
|
||||
|
|
@ -408,6 +469,8 @@ COPY 54701
|
|||
<ol class="list-unstyled">
|
||||
|
||||
|
||||
<li><a href="/cgspace-notes/2018-11/">November, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-10/">October, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-09/">September, 2018</a></li>
|
||||
|
|
@ -416,8 +479,6 @@ COPY 54701
|
|||
|
||||
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
|
||||
|
||||
</ol>
|
||||
</section>
|
||||
|
||||
|
|
|
|||
|
|
@ -9,7 +9,7 @@
|
|||
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
|
||||
<meta property="og:type" content="website" />
|
||||
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />
|
||||
<meta property="og:updated_time" content="2017-03-01T17:08:52+02:00"/>
|
||||
<meta property="og:updated_time" content="2017-04-02T17:08:52+02:00"/>
|
||||
|
||||
<meta name="twitter:card" content="summary"/>
|
||||
<meta name="twitter:title" content="CGSpace Notes"/>
|
||||
|
|
@ -28,7 +28,7 @@
|
|||
"@type": "Person",
|
||||
"name": "Alan Orth"
|
||||
},
|
||||
"dateModified": "2017-03-01T17:08:52+02:00",
|
||||
"dateModified": "2017-04-02T17:08:52+02:00",
|
||||
"keywords": "notes,notes,",
|
||||
"description": "Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
|
||||
}
|
||||
|
|
@ -89,6 +89,41 @@
|
|||
|
||||
|
||||
|
||||
<article class="blog-post">
|
||||
<header>
|
||||
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2017-04/">April, 2017</a></h2>
|
||||
<p class="blog-post-meta"><time datetime="2017-04-02T17:08:52+02:00">Sun Apr 02, 2017</time> by Alan Orth in
|
||||
|
||||
<i class="fa fa-tag" aria-hidden="true"></i> <a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
|
||||
|
||||
</p>
|
||||
</header>
|
||||
<h2 id="2017-04-02">2017-04-02</h2>
|
||||
|
||||
<ul>
|
||||
<li>Merge one change to CCAFS flagships that I had forgotten to remove last month (“MANAGING CLIMATE RISK”): <a href="https://github.com/ilri/DSpace/pull/317">https://github.com/ilri/DSpace/pull/317</a></li>
|
||||
<li>Quick proof-of-concept hack to add <code>dc.rights</code> to the input form, including some inline instructions/hints:</li>
|
||||
</ul>
|
||||
|
||||
<p><img src="/cgspace-notes/2017/04/dc-rights.png" alt="dc.rights in the submission form" /></p>
|
||||
|
||||
<ul>
|
||||
<li>Remove redundant/duplicate text in the DSpace submission license</li>
|
||||
<li>Testing the CMYK patch on a collection with 650 items:</li>
|
||||
</ul>
|
||||
|
||||
<pre><code>$ [dspace]/bin/dspace filter-media -f -i 10568/16498 -p "ImageMagick PDF Thumbnail" -v >& /tmp/filter-media-cmyk.txt
|
||||
</code></pre>
|
||||
|
||||
<p></p>
|
||||
<a href='https://alanorth.github.io/cgspace-notes/2017-04/'>Read more →</a>
|
||||
</article>
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
<article class="blog-post">
|
||||
<header>
|
||||
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2017-03/">March, 2017</a></h2>
|
||||
|
|
@ -395,35 +430,6 @@ dspacetest=# select text_value from metadatavalue where metadata_field_id=3 and
|
|||
|
||||
|
||||
|
||||
|
||||
<article class="blog-post">
|
||||
<header>
|
||||
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-06/">June, 2016</a></h2>
|
||||
<p class="blog-post-meta"><time datetime="2016-06-01T10:53:00+03:00">Wed Jun 01, 2016</time> by Alan Orth in
|
||||
|
||||
<i class="fa fa-tag" aria-hidden="true"></i> <a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
|
||||
|
||||
</p>
|
||||
</header>
|
||||
<h2 id="2016-06-01">2016-06-01</h2>
|
||||
|
||||
<ul>
|
||||
<li>Experimenting with IFPRI OAI (we want to harvest their publications)</li>
|
||||
<li>After reading the <a href="https://www.oclc.org/support/services/contentdm/help/server-admin-help/oai-support.en.html">ContentDM documentation</a> I found IFPRI’s OAI endpoint: <a href="http://ebrary.ifpri.org/oai/oai.php">http://ebrary.ifpri.org/oai/oai.php</a></li>
|
||||
<li>After reading the <a href="https://www.openarchives.org/OAI/openarchivesprotocol.html">OAI documentation</a> and testing with an <a href="http://validator.oaipmh.com/">OAI validator</a> I found out how to get their publications</li>
|
||||
<li>This is their publications set: <a href="http://ebrary.ifpri.org/oai/oai.php?verb=ListRecords&from=2016-01-01&set=p15738coll2&metadataPrefix=oai_dc">http://ebrary.ifpri.org/oai/oai.php?verb=ListRecords&from=2016-01-01&set=p15738coll2&metadataPrefix=oai_dc</a></li>
|
||||
<li>You can see the others by using the OAI <code>ListSets</code> verb: <a href="http://ebrary.ifpri.org/oai/oai.php?verb=ListSets">http://ebrary.ifpri.org/oai/oai.php?verb=ListSets</a></li>
|
||||
<li>Working on second phase of metadata migration, looks like this will work for moving CPWF-specific data in <code>dc.identifier.fund</code> to <code>cg.identifier.cpwfproject</code> and then the rest to <code>dc.description.sponsorship</code></li>
|
||||
</ul>
|
||||
|
||||
<p></p>
|
||||
<a href='https://alanorth.github.io/cgspace-notes/2016-06/'>Read more →</a>
|
||||
</article>
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
<nav class="blog-pagination">
|
||||
|
||||
<a class="btn btn-outline-primary" href="/cgspace-notes/page/2/" rel="prev" role="button">Previous page</a>
|
||||
|
|
@ -448,6 +454,8 @@ dspacetest=# select text_value from metadatavalue where metadata_field_id=3 and
|
|||
<ol class="list-unstyled">
|
||||
|
||||
|
||||
<li><a href="/cgspace-notes/2018-11/">November, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-10/">October, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-09/">September, 2018</a></li>
|
||||
|
|
@ -456,8 +464,6 @@ dspacetest=# select text_value from metadatavalue where metadata_field_id=3 and
|
|||
|
||||
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
|
||||
|
||||
</ol>
|
||||
</section>
|
||||
|
||||
|
|
|
|||
|
|
@ -9,7 +9,7 @@
|
|||
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
|
||||
<meta property="og:type" content="website" />
|
||||
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />
|
||||
<meta property="og:updated_time" content="2016-05-01T23:06:00+03:00"/>
|
||||
<meta property="og:updated_time" content="2016-06-01T10:53:00+03:00"/>
|
||||
|
||||
<meta name="twitter:card" content="summary"/>
|
||||
<meta name="twitter:title" content="CGSpace Notes"/>
|
||||
|
|
@ -28,7 +28,7 @@
|
|||
"@type": "Person",
|
||||
"name": "Alan Orth"
|
||||
},
|
||||
"dateModified": "2016-05-01T23:06:00+03:00",
|
||||
"dateModified": "2016-06-01T10:53:00+03:00",
|
||||
"keywords": "notes,notes,",
|
||||
"description": "Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
|
||||
}
|
||||
|
|
@ -89,6 +89,35 @@
|
|||
|
||||
|
||||
|
||||
<article class="blog-post">
|
||||
<header>
|
||||
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-06/">June, 2016</a></h2>
|
||||
<p class="blog-post-meta"><time datetime="2016-06-01T10:53:00+03:00">Wed Jun 01, 2016</time> by Alan Orth in
|
||||
|
||||
<i class="fa fa-tag" aria-hidden="true"></i> <a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
|
||||
|
||||
</p>
|
||||
</header>
|
||||
<h2 id="2016-06-01">2016-06-01</h2>
|
||||
|
||||
<ul>
|
||||
<li>Experimenting with IFPRI OAI (we want to harvest their publications)</li>
|
||||
<li>After reading the <a href="https://www.oclc.org/support/services/contentdm/help/server-admin-help/oai-support.en.html">ContentDM documentation</a> I found IFPRI’s OAI endpoint: <a href="http://ebrary.ifpri.org/oai/oai.php">http://ebrary.ifpri.org/oai/oai.php</a></li>
|
||||
<li>After reading the <a href="https://www.openarchives.org/OAI/openarchivesprotocol.html">OAI documentation</a> and testing with an <a href="http://validator.oaipmh.com/">OAI validator</a> I found out how to get their publications</li>
|
||||
<li>This is their publications set: <a href="http://ebrary.ifpri.org/oai/oai.php?verb=ListRecords&from=2016-01-01&set=p15738coll2&metadataPrefix=oai_dc">http://ebrary.ifpri.org/oai/oai.php?verb=ListRecords&from=2016-01-01&set=p15738coll2&metadataPrefix=oai_dc</a></li>
|
||||
<li>You can see the others by using the OAI <code>ListSets</code> verb: <a href="http://ebrary.ifpri.org/oai/oai.php?verb=ListSets">http://ebrary.ifpri.org/oai/oai.php?verb=ListSets</a></li>
|
||||
<li>Working on second phase of metadata migration, looks like this will work for moving CPWF-specific data in <code>dc.identifier.fund</code> to <code>cg.identifier.cpwfproject</code> and then the rest to <code>dc.description.sponsorship</code></li>
|
||||
</ul>
|
||||
|
||||
<p></p>
|
||||
<a href='https://alanorth.github.io/cgspace-notes/2016-06/'>Read more →</a>
|
||||
</article>
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
<article class="blog-post">
|
||||
<header>
|
||||
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-05/">May, 2016</a></h2>
|
||||
|
|
@ -296,7 +325,7 @@
|
|||
<article class="blog-post">
|
||||
<header>
|
||||
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/posts/">Posts</a></h2>
|
||||
<p class="blog-post-meta"><time datetime="2018-10-01T22:31:54+03:00">Mon Oct 01, 2018</time> by Alan Orth</p>
|
||||
<p class="blog-post-meta"><time datetime="2018-11-01T16:41:30+02:00">Thu Nov 01, 2018</time> by Alan Orth</p>
|
||||
</header>
|
||||
|
||||
<a href='https://alanorth.github.io/cgspace-notes/posts/'>Read more →</a>
|
||||
|
|
@ -330,6 +359,8 @@
|
|||
<ol class="list-unstyled">
|
||||
|
||||
|
||||
<li><a href="/cgspace-notes/2018-11/">November, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-10/">October, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-09/">September, 2018</a></li>
|
||||
|
|
@ -338,8 +369,6 @@
|
|||
|
||||
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
|
||||
|
||||
</ol>
|
||||
</section>
|
||||
|
||||
|
|
|
|||
|
|
@ -9,7 +9,7 @@
|
|||
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
|
||||
<meta property="og:type" content="website" />
|
||||
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" />
|
||||
<meta property="og:updated_time" content="2018-10-01T22:31:54+03:00"/>
|
||||
<meta property="og:updated_time" content="2018-11-01T16:41:30+02:00"/>
|
||||
|
||||
<meta name="twitter:card" content="summary"/>
|
||||
<meta name="twitter:title" content="Posts"/>
|
||||
|
|
@ -28,7 +28,7 @@
|
|||
"@type": "Person",
|
||||
"name": "Alan Orth"
|
||||
},
|
||||
"dateModified": "2018-10-01T22:31:54+03:00",
|
||||
"dateModified": "2018-11-01T16:41:30+02:00",
|
||||
"keywords": "notes,notes,",
|
||||
"description": "Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
|
||||
}
|
||||
|
|
@ -89,6 +89,31 @@
|
|||
|
||||
|
||||
|
||||
<article class="blog-post">
|
||||
<header>
|
||||
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2018-11/">November, 2018</a></h2>
|
||||
<p class="blog-post-meta"><time datetime="2018-11-01T16:41:30+02:00">Thu Nov 01, 2018</time> by Alan Orth in
|
||||
|
||||
<i class="fa fa-tag" aria-hidden="true"></i> <a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
|
||||
|
||||
</p>
|
||||
</header>
|
||||
<h2 id="2018-11-01">2018-11-01</h2>
|
||||
|
||||
<ul>
|
||||
<li>Finalize AReS Phase I and Phase II ToRs</li>
|
||||
<li>Send a note about my <a href="https://github.com/ilri/dspace-statistics-api">dspace-statistics-api</a> to the dspace-tech mailing list</li>
|
||||
</ul>
|
||||
|
||||
<p></p>
|
||||
<a href='https://alanorth.github.io/cgspace-notes/2018-11/'>Read more →</a>
|
||||
</article>
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
<article class="blog-post">
|
||||
<header>
|
||||
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2018-10/">October, 2018</a></h2>
|
||||
|
|
@ -98,7 +123,14 @@
|
|||
|
||||
</p>
|
||||
</header>
|
||||
2018-10-01 Phil Thornton got an ORCID identifier so we need to add it to the list on CGSpace and tag his existing items I created a GitHub issue to track this #389, because I’m super busy in Nairobi right now 2018-10-03 I see Moayad was busy collecting item views and downloads from CGSpace yesterday: # zcat --force /var/log/nginx/*.log /var/log/nginx/*.log.1 | grep -E "02/Oct/2018" | awk '{print $1} ' | sort | uniq -c | sort -n | tail -n 10 933 40.
|
||||
<h2 id="2018-10-01">2018-10-01</h2>
|
||||
|
||||
<ul>
|
||||
<li>Phil Thornton got an ORCID identifier so we need to add it to the list on CGSpace and tag his existing items</li>
|
||||
<li>I created a GitHub issue to track this <a href="https://github.com/ilri/DSpace/issues/389">#389</a>, because I’m super busy in Nairobi right now</li>
|
||||
</ul>
|
||||
|
||||
<p></p>
|
||||
<a href='https://alanorth.github.io/cgspace-notes/2018-10/'>Read more →</a>
|
||||
</article>
|
||||
|
||||
|
|
@ -357,102 +389,6 @@ sys 2m7.289s
|
|||
|
||||
|
||||
|
||||
|
||||
<article class="blog-post">
|
||||
<header>
|
||||
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2018-01/">January, 2018</a></h2>
|
||||
<p class="blog-post-meta"><time datetime="2018-01-02T08:35:54-08:00">Tue Jan 02, 2018</time> by Alan Orth in
|
||||
|
||||
<i class="fa fa-tag" aria-hidden="true"></i> <a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
|
||||
|
||||
</p>
|
||||
</header>
|
||||
<h2 id="2018-01-02">2018-01-02</h2>
|
||||
|
||||
<ul>
|
||||
<li>Uptime Robot noticed that CGSpace went down and up a few times last night, for a few minutes each time</li>
|
||||
<li>I didn’t get any load alerts from Linode and the REST and XMLUI logs don’t show anything out of the ordinary</li>
|
||||
<li>The nginx logs show HTTP 200s until <code>02/Jan/2018:11:27:17 +0000</code> when Uptime Robot got an HTTP 500</li>
|
||||
<li>In dspace.log around that time I see many errors like “Client closed the connection before file download was complete”</li>
|
||||
<li>And just before that I see this:</li>
|
||||
</ul>
|
||||
|
||||
<pre><code>Caused by: org.apache.tomcat.jdbc.pool.PoolExhaustedException: [http-bio-127.0.0.1-8443-exec-980] Timeout: Pool empty. Unable to fetch a connection in 5 seconds, none available[size:50; busy:50; idle:0; lastwait:5000].
|
||||
</code></pre>
|
||||
|
||||
<ul>
|
||||
<li>Ah hah! So the pool was actually empty!</li>
|
||||
<li>I need to increase that, let’s try to bump it up from 50 to 75</li>
|
||||
<li>After that one client got an HTTP 499 but then the rest were HTTP 200, so I don’t know what the hell Uptime Robot saw</li>
|
||||
<li>I notice this error quite a few times in dspace.log:</li>
|
||||
</ul>
|
||||
|
||||
<pre><code>2018-01-02 01:21:19,137 ERROR org.dspace.app.xmlui.aspect.discovery.SidebarFacetsTransformer @ Error while searching for sidebar facets
|
||||
org.dspace.discovery.SearchServiceException: org.apache.solr.search.SyntaxError: Cannot parse 'dateIssued_keyword:[1976+TO+1979]': Encountered " "]" "] "" at line 1, column 32.
|
||||
</code></pre>
|
||||
|
||||
<ul>
|
||||
<li>And there are many of these errors every day for the past month:</li>
|
||||
</ul>
|
||||
|
||||
<pre><code>$ grep -c "Error while searching for sidebar facets" dspace.log.*
|
||||
dspace.log.2017-11-21:4
|
||||
dspace.log.2017-11-22:1
|
||||
dspace.log.2017-11-23:4
|
||||
dspace.log.2017-11-24:11
|
||||
dspace.log.2017-11-25:0
|
||||
dspace.log.2017-11-26:1
|
||||
dspace.log.2017-11-27:7
|
||||
dspace.log.2017-11-28:21
|
||||
dspace.log.2017-11-29:31
|
||||
dspace.log.2017-11-30:15
|
||||
dspace.log.2017-12-01:15
|
||||
dspace.log.2017-12-02:20
|
||||
dspace.log.2017-12-03:38
|
||||
dspace.log.2017-12-04:65
|
||||
dspace.log.2017-12-05:43
|
||||
dspace.log.2017-12-06:72
|
||||
dspace.log.2017-12-07:27
|
||||
dspace.log.2017-12-08:15
|
||||
dspace.log.2017-12-09:29
|
||||
dspace.log.2017-12-10:35
|
||||
dspace.log.2017-12-11:20
|
||||
dspace.log.2017-12-12:44
|
||||
dspace.log.2017-12-13:36
|
||||
dspace.log.2017-12-14:59
|
||||
dspace.log.2017-12-15:104
|
||||
dspace.log.2017-12-16:53
|
||||
dspace.log.2017-12-17:66
|
||||
dspace.log.2017-12-18:83
|
||||
dspace.log.2017-12-19:101
|
||||
dspace.log.2017-12-20:74
|
||||
dspace.log.2017-12-21:55
|
||||
dspace.log.2017-12-22:66
|
||||
dspace.log.2017-12-23:50
|
||||
dspace.log.2017-12-24:85
|
||||
dspace.log.2017-12-25:62
|
||||
dspace.log.2017-12-26:49
|
||||
dspace.log.2017-12-27:30
|
||||
dspace.log.2017-12-28:54
|
||||
dspace.log.2017-12-29:68
|
||||
dspace.log.2017-12-30:89
|
||||
dspace.log.2017-12-31:53
|
||||
dspace.log.2018-01-01:45
|
||||
dspace.log.2018-01-02:34
|
||||
</code></pre>
|
||||
|
||||
<ul>
|
||||
<li>Danny wrote to ask for help renewing the wildcard ilri.org certificate and I advised that we should probably use Let’s Encrypt if it’s just a handful of domains</li>
|
||||
</ul>
|
||||
|
||||
<p></p>
|
||||
<a href='https://alanorth.github.io/cgspace-notes/2018-01/'>Read more →</a>
|
||||
</article>
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
<nav class="blog-pagination">
|
||||
|
||||
|
||||
|
|
@ -477,6 +413,8 @@ dspace.log.2018-01-02:34
|
|||
<ol class="list-unstyled">
|
||||
|
||||
|
||||
<li><a href="/cgspace-notes/2018-11/">November, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-10/">October, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-09/">September, 2018</a></li>
|
||||
|
|
@ -485,8 +423,6 @@ dspace.log.2018-01-02:34
|
|||
|
||||
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
|
||||
|
||||
</ol>
|
||||
</section>
|
||||
|
||||
|
|
|
|||
|
|
@ -6,18 +6,41 @@
|
|||
<description>Recent content in Posts on CGSpace Notes</description>
|
||||
<generator>Hugo -- gohugo.io</generator>
|
||||
<language>en-us</language>
|
||||
<lastBuildDate>Mon, 01 Oct 2018 22:31:54 +0300</lastBuildDate>
|
||||
<lastBuildDate>Thu, 01 Nov 2018 16:41:30 +0200</lastBuildDate>
|
||||
|
||||
<atom:link href="https://alanorth.github.io/cgspace-notes/posts/index.xml" rel="self" type="application/rss+xml" />
|
||||
|
||||
|
||||
<item>
|
||||
<title>November, 2018</title>
|
||||
<link>https://alanorth.github.io/cgspace-notes/2018-11/</link>
|
||||
<pubDate>Thu, 01 Nov 2018 16:41:30 +0200</pubDate>
|
||||
|
||||
<guid>https://alanorth.github.io/cgspace-notes/2018-11/</guid>
|
||||
<description><h2 id="2018-11-01">2018-11-01</h2>
|
||||
|
||||
<ul>
|
||||
<li>Finalize AReS Phase I and Phase II ToRs</li>
|
||||
<li>Send a note about my <a href="https://github.com/ilri/dspace-statistics-api">dspace-statistics-api</a> to the dspace-tech mailing list</li>
|
||||
</ul>
|
||||
|
||||
<p></p></description>
|
||||
</item>
|
||||
|
||||
<item>
|
||||
<title>October, 2018</title>
|
||||
<link>https://alanorth.github.io/cgspace-notes/2018-10/</link>
|
||||
<pubDate>Mon, 01 Oct 2018 22:31:54 +0300</pubDate>
|
||||
|
||||
<guid>https://alanorth.github.io/cgspace-notes/2018-10/</guid>
|
||||
<description>2018-10-01 Phil Thornton got an ORCID identifier so we need to add it to the list on CGSpace and tag his existing items I created a GitHub issue to track this #389, because I&rsquo;m super busy in Nairobi right now 2018-10-03 I see Moayad was busy collecting item views and downloads from CGSpace yesterday: # zcat --force /var/log/nginx/*.log /var/log/nginx/*.log.1 | grep -E &quot;02/Oct/2018&quot; | awk '{print $1} ' | sort | uniq -c | sort -n | tail -n 10 933 40.</description>
|
||||
<description><h2 id="2018-10-01">2018-10-01</h2>
|
||||
|
||||
<ul>
|
||||
<li>Phil Thornton got an ORCID identifier so we need to add it to the list on CGSpace and tag his existing items</li>
|
||||
<li>I created a GitHub issue to track this <a href="https://github.com/ilri/DSpace/issues/389">#389</a>, because I&rsquo;m super busy in Nairobi right now</li>
|
||||
</ul>
|
||||
|
||||
<p></p></description>
|
||||
</item>
|
||||
|
||||
<item>
|
||||
|
|
|
|||
|
|
@ -9,7 +9,7 @@
|
|||
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
|
||||
<meta property="og:type" content="website" />
|
||||
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" />
|
||||
<meta property="og:updated_time" content="2017-12-01T13:53:54+03:00"/>
|
||||
<meta property="og:updated_time" content="2018-01-02T08:35:54-08:00"/>
|
||||
|
||||
<meta name="twitter:card" content="summary"/>
|
||||
<meta name="twitter:title" content="Posts"/>
|
||||
|
|
@ -28,7 +28,7 @@
|
|||
"@type": "Person",
|
||||
"name": "Alan Orth"
|
||||
},
|
||||
"dateModified": "2017-12-01T13:53:54+03:00",
|
||||
"dateModified": "2018-01-02T08:35:54-08:00",
|
||||
"keywords": "notes,notes,",
|
||||
"description": "Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
|
||||
}
|
||||
|
|
@ -89,6 +89,102 @@
|
|||
|
||||
|
||||
|
||||
<article class="blog-post">
|
||||
<header>
|
||||
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2018-01/">January, 2018</a></h2>
|
||||
<p class="blog-post-meta"><time datetime="2018-01-02T08:35:54-08:00">Tue Jan 02, 2018</time> by Alan Orth in
|
||||
|
||||
<i class="fa fa-tag" aria-hidden="true"></i> <a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
|
||||
|
||||
</p>
|
||||
</header>
|
||||
<h2 id="2018-01-02">2018-01-02</h2>
|
||||
|
||||
<ul>
|
||||
<li>Uptime Robot noticed that CGSpace went down and up a few times last night, for a few minutes each time</li>
|
||||
<li>I didn’t get any load alerts from Linode and the REST and XMLUI logs don’t show anything out of the ordinary</li>
|
||||
<li>The nginx logs show HTTP 200s until <code>02/Jan/2018:11:27:17 +0000</code> when Uptime Robot got an HTTP 500</li>
|
||||
<li>In dspace.log around that time I see many errors like “Client closed the connection before file download was complete”</li>
|
||||
<li>And just before that I see this:</li>
|
||||
</ul>
|
||||
|
||||
<pre><code>Caused by: org.apache.tomcat.jdbc.pool.PoolExhaustedException: [http-bio-127.0.0.1-8443-exec-980] Timeout: Pool empty. Unable to fetch a connection in 5 seconds, none available[size:50; busy:50; idle:0; lastwait:5000].
|
||||
</code></pre>
|
||||
|
||||
<ul>
|
||||
<li>Ah hah! So the pool was actually empty!</li>
|
||||
<li>I need to increase that, let’s try to bump it up from 50 to 75</li>
|
||||
<li>After that one client got an HTTP 499 but then the rest were HTTP 200, so I don’t know what the hell Uptime Robot saw</li>
|
||||
<li>I notice this error quite a few times in dspace.log:</li>
|
||||
</ul>
|
||||
|
||||
<pre><code>2018-01-02 01:21:19,137 ERROR org.dspace.app.xmlui.aspect.discovery.SidebarFacetsTransformer @ Error while searching for sidebar facets
|
||||
org.dspace.discovery.SearchServiceException: org.apache.solr.search.SyntaxError: Cannot parse 'dateIssued_keyword:[1976+TO+1979]': Encountered " "]" "] "" at line 1, column 32.
|
||||
</code></pre>
|
||||
|
||||
<ul>
|
||||
<li>And there are many of these errors every day for the past month:</li>
|
||||
</ul>
|
||||
|
||||
<pre><code>$ grep -c "Error while searching for sidebar facets" dspace.log.*
|
||||
dspace.log.2017-11-21:4
|
||||
dspace.log.2017-11-22:1
|
||||
dspace.log.2017-11-23:4
|
||||
dspace.log.2017-11-24:11
|
||||
dspace.log.2017-11-25:0
|
||||
dspace.log.2017-11-26:1
|
||||
dspace.log.2017-11-27:7
|
||||
dspace.log.2017-11-28:21
|
||||
dspace.log.2017-11-29:31
|
||||
dspace.log.2017-11-30:15
|
||||
dspace.log.2017-12-01:15
|
||||
dspace.log.2017-12-02:20
|
||||
dspace.log.2017-12-03:38
|
||||
dspace.log.2017-12-04:65
|
||||
dspace.log.2017-12-05:43
|
||||
dspace.log.2017-12-06:72
|
||||
dspace.log.2017-12-07:27
|
||||
dspace.log.2017-12-08:15
|
||||
dspace.log.2017-12-09:29
|
||||
dspace.log.2017-12-10:35
|
||||
dspace.log.2017-12-11:20
|
||||
dspace.log.2017-12-12:44
|
||||
dspace.log.2017-12-13:36
|
||||
dspace.log.2017-12-14:59
|
||||
dspace.log.2017-12-15:104
|
||||
dspace.log.2017-12-16:53
|
||||
dspace.log.2017-12-17:66
|
||||
dspace.log.2017-12-18:83
|
||||
dspace.log.2017-12-19:101
|
||||
dspace.log.2017-12-20:74
|
||||
dspace.log.2017-12-21:55
|
||||
dspace.log.2017-12-22:66
|
||||
dspace.log.2017-12-23:50
|
||||
dspace.log.2017-12-24:85
|
||||
dspace.log.2017-12-25:62
|
||||
dspace.log.2017-12-26:49
|
||||
dspace.log.2017-12-27:30
|
||||
dspace.log.2017-12-28:54
|
||||
dspace.log.2017-12-29:68
|
||||
dspace.log.2017-12-30:89
|
||||
dspace.log.2017-12-31:53
|
||||
dspace.log.2018-01-01:45
|
||||
dspace.log.2018-01-02:34
|
||||
</code></pre>
|
||||
|
||||
<ul>
|
||||
<li>Danny wrote to ask for help renewing the wildcard ilri.org certificate and I advised that we should probably use Let’s Encrypt if it’s just a handful of domains</li>
|
||||
</ul>
|
||||
|
||||
<p></p>
|
||||
<a href='https://alanorth.github.io/cgspace-notes/2018-01/'>Read more →</a>
|
||||
</article>
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
<article class="blog-post">
|
||||
<header>
|
||||
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2017-12/">December, 2017</a></h2>
|
||||
|
|
@ -349,41 +445,6 @@ COPY 54701
|
|||
|
||||
|
||||
|
||||
|
||||
<article class="blog-post">
|
||||
<header>
|
||||
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2017-04/">April, 2017</a></h2>
|
||||
<p class="blog-post-meta"><time datetime="2017-04-02T17:08:52+02:00">Sun Apr 02, 2017</time> by Alan Orth in
|
||||
|
||||
<i class="fa fa-tag" aria-hidden="true"></i> <a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
|
||||
|
||||
</p>
|
||||
</header>
|
||||
<h2 id="2017-04-02">2017-04-02</h2>
|
||||
|
||||
<ul>
|
||||
<li>Merge one change to CCAFS flagships that I had forgotten to remove last month (“MANAGING CLIMATE RISK”): <a href="https://github.com/ilri/DSpace/pull/317">https://github.com/ilri/DSpace/pull/317</a></li>
|
||||
<li>Quick proof-of-concept hack to add <code>dc.rights</code> to the input form, including some inline instructions/hints:</li>
|
||||
</ul>
|
||||
|
||||
<p><img src="/cgspace-notes/2017/04/dc-rights.png" alt="dc.rights in the submission form" /></p>
|
||||
|
||||
<ul>
|
||||
<li>Remove redundant/duplicate text in the DSpace submission license</li>
|
||||
<li>Testing the CMYK patch on a collection with 650 items:</li>
|
||||
</ul>
|
||||
|
||||
<pre><code>$ [dspace]/bin/dspace filter-media -f -i 10568/16498 -p "ImageMagick PDF Thumbnail" -v >& /tmp/filter-media-cmyk.txt
|
||||
</code></pre>
|
||||
|
||||
<p></p>
|
||||
<a href='https://alanorth.github.io/cgspace-notes/2017-04/'>Read more →</a>
|
||||
</article>
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
<nav class="blog-pagination">
|
||||
|
||||
<a class="btn btn-outline-primary" href="/cgspace-notes/posts/" rel="prev" role="button">Previous page</a>
|
||||
|
|
@ -408,6 +469,8 @@ COPY 54701
|
|||
<ol class="list-unstyled">
|
||||
|
||||
|
||||
<li><a href="/cgspace-notes/2018-11/">November, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-10/">October, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-09/">September, 2018</a></li>
|
||||
|
|
@ -416,8 +479,6 @@ COPY 54701
|
|||
|
||||
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
|
||||
|
||||
</ol>
|
||||
</section>
|
||||
|
||||
|
|
|
|||
|
|
@ -9,7 +9,7 @@
|
|||
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
|
||||
<meta property="og:type" content="website" />
|
||||
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" />
|
||||
<meta property="og:updated_time" content="2017-03-01T17:08:52+02:00"/>
|
||||
<meta property="og:updated_time" content="2017-04-02T17:08:52+02:00"/>
|
||||
|
||||
<meta name="twitter:card" content="summary"/>
|
||||
<meta name="twitter:title" content="Posts"/>
|
||||
|
|
@ -28,7 +28,7 @@
|
|||
"@type": "Person",
|
||||
"name": "Alan Orth"
|
||||
},
|
||||
"dateModified": "2017-03-01T17:08:52+02:00",
|
||||
"dateModified": "2017-04-02T17:08:52+02:00",
|
||||
"keywords": "notes,notes,",
|
||||
"description": "Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
|
||||
}
|
||||
|
|
@ -89,6 +89,41 @@
|
|||
|
||||
|
||||
|
||||
<article class="blog-post">
|
||||
<header>
|
||||
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2017-04/">April, 2017</a></h2>
|
||||
<p class="blog-post-meta"><time datetime="2017-04-02T17:08:52+02:00">Sun Apr 02, 2017</time> by Alan Orth in
|
||||
|
||||
<i class="fa fa-tag" aria-hidden="true"></i> <a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
|
||||
|
||||
</p>
|
||||
</header>
|
||||
<h2 id="2017-04-02">2017-04-02</h2>
|
||||
|
||||
<ul>
|
||||
<li>Merge one change to CCAFS flagships that I had forgotten to remove last month (“MANAGING CLIMATE RISK”): <a href="https://github.com/ilri/DSpace/pull/317">https://github.com/ilri/DSpace/pull/317</a></li>
|
||||
<li>Quick proof-of-concept hack to add <code>dc.rights</code> to the input form, including some inline instructions/hints:</li>
|
||||
</ul>
|
||||
|
||||
<p><img src="/cgspace-notes/2017/04/dc-rights.png" alt="dc.rights in the submission form" /></p>
|
||||
|
||||
<ul>
|
||||
<li>Remove redundant/duplicate text in the DSpace submission license</li>
|
||||
<li>Testing the CMYK patch on a collection with 650 items:</li>
|
||||
</ul>
|
||||
|
||||
<pre><code>$ [dspace]/bin/dspace filter-media -f -i 10568/16498 -p "ImageMagick PDF Thumbnail" -v >& /tmp/filter-media-cmyk.txt
|
||||
</code></pre>
|
||||
|
||||
<p></p>
|
||||
<a href='https://alanorth.github.io/cgspace-notes/2017-04/'>Read more →</a>
|
||||
</article>
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
<article class="blog-post">
|
||||
<header>
|
||||
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2017-03/">March, 2017</a></h2>
|
||||
|
|
@ -395,35 +430,6 @@ dspacetest=# select text_value from metadatavalue where metadata_field_id=3 and
|
|||
|
||||
|
||||
|
||||
|
||||
<article class="blog-post">
|
||||
<header>
|
||||
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-06/">June, 2016</a></h2>
|
||||
<p class="blog-post-meta"><time datetime="2016-06-01T10:53:00+03:00">Wed Jun 01, 2016</time> by Alan Orth in
|
||||
|
||||
<i class="fa fa-tag" aria-hidden="true"></i> <a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
|
||||
|
||||
</p>
|
||||
</header>
|
||||
<h2 id="2016-06-01">2016-06-01</h2>
|
||||
|
||||
<ul>
|
||||
<li>Experimenting with IFPRI OAI (we want to harvest their publications)</li>
|
||||
<li>After reading the <a href="https://www.oclc.org/support/services/contentdm/help/server-admin-help/oai-support.en.html">ContentDM documentation</a> I found IFPRI’s OAI endpoint: <a href="http://ebrary.ifpri.org/oai/oai.php">http://ebrary.ifpri.org/oai/oai.php</a></li>
|
||||
<li>After reading the <a href="https://www.openarchives.org/OAI/openarchivesprotocol.html">OAI documentation</a> and testing with an <a href="http://validator.oaipmh.com/">OAI validator</a> I found out how to get their publications</li>
|
||||
<li>This is their publications set: <a href="http://ebrary.ifpri.org/oai/oai.php?verb=ListRecords&from=2016-01-01&set=p15738coll2&metadataPrefix=oai_dc">http://ebrary.ifpri.org/oai/oai.php?verb=ListRecords&from=2016-01-01&set=p15738coll2&metadataPrefix=oai_dc</a></li>
|
||||
<li>You can see the others by using the OAI <code>ListSets</code> verb: <a href="http://ebrary.ifpri.org/oai/oai.php?verb=ListSets">http://ebrary.ifpri.org/oai/oai.php?verb=ListSets</a></li>
|
||||
<li>Working on second phase of metadata migration, looks like this will work for moving CPWF-specific data in <code>dc.identifier.fund</code> to <code>cg.identifier.cpwfproject</code> and then the rest to <code>dc.description.sponsorship</code></li>
|
||||
</ul>
|
||||
|
||||
<p></p>
|
||||
<a href='https://alanorth.github.io/cgspace-notes/2016-06/'>Read more →</a>
|
||||
</article>
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
<nav class="blog-pagination">
|
||||
|
||||
<a class="btn btn-outline-primary" href="/cgspace-notes/posts/page/2/" rel="prev" role="button">Previous page</a>
|
||||
|
|
@ -448,6 +454,8 @@ dspacetest=# select text_value from metadatavalue where metadata_field_id=3 and
|
|||
<ol class="list-unstyled">
|
||||
|
||||
|
||||
<li><a href="/cgspace-notes/2018-11/">November, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-10/">October, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-09/">September, 2018</a></li>
|
||||
|
|
@ -456,8 +464,6 @@ dspacetest=# select text_value from metadatavalue where metadata_field_id=3 and
|
|||
|
||||
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
|
||||
|
||||
</ol>
|
||||
</section>
|
||||
|
||||
|
|
|
|||
|
|
@ -9,7 +9,7 @@
|
|||
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
|
||||
<meta property="og:type" content="website" />
|
||||
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" />
|
||||
<meta property="og:updated_time" content="2016-05-01T23:06:00+03:00"/>
|
||||
<meta property="og:updated_time" content="2016-06-01T10:53:00+03:00"/>
|
||||
|
||||
<meta name="twitter:card" content="summary"/>
|
||||
<meta name="twitter:title" content="Posts"/>
|
||||
|
|
@ -28,7 +28,7 @@
|
|||
"@type": "Person",
|
||||
"name": "Alan Orth"
|
||||
},
|
||||
"dateModified": "2016-05-01T23:06:00+03:00",
|
||||
"dateModified": "2016-06-01T10:53:00+03:00",
|
||||
"keywords": "notes,notes,",
|
||||
"description": "Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
|
||||
}
|
||||
|
|
@ -89,6 +89,35 @@
|
|||
|
||||
|
||||
|
||||
<article class="blog-post">
|
||||
<header>
|
||||
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-06/">June, 2016</a></h2>
|
||||
<p class="blog-post-meta"><time datetime="2016-06-01T10:53:00+03:00">Wed Jun 01, 2016</time> by Alan Orth in
|
||||
|
||||
<i class="fa fa-tag" aria-hidden="true"></i> <a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
|
||||
|
||||
</p>
|
||||
</header>
|
||||
<h2 id="2016-06-01">2016-06-01</h2>
|
||||
|
||||
<ul>
|
||||
<li>Experimenting with IFPRI OAI (we want to harvest their publications)</li>
|
||||
<li>After reading the <a href="https://www.oclc.org/support/services/contentdm/help/server-admin-help/oai-support.en.html">ContentDM documentation</a> I found IFPRI’s OAI endpoint: <a href="http://ebrary.ifpri.org/oai/oai.php">http://ebrary.ifpri.org/oai/oai.php</a></li>
|
||||
<li>After reading the <a href="https://www.openarchives.org/OAI/openarchivesprotocol.html">OAI documentation</a> and testing with an <a href="http://validator.oaipmh.com/">OAI validator</a> I found out how to get their publications</li>
|
||||
<li>This is their publications set: <a href="http://ebrary.ifpri.org/oai/oai.php?verb=ListRecords&from=2016-01-01&set=p15738coll2&metadataPrefix=oai_dc">http://ebrary.ifpri.org/oai/oai.php?verb=ListRecords&from=2016-01-01&set=p15738coll2&metadataPrefix=oai_dc</a></li>
|
||||
<li>You can see the others by using the OAI <code>ListSets</code> verb: <a href="http://ebrary.ifpri.org/oai/oai.php?verb=ListSets">http://ebrary.ifpri.org/oai/oai.php?verb=ListSets</a></li>
|
||||
<li>Working on second phase of metadata migration, looks like this will work for moving CPWF-specific data in <code>dc.identifier.fund</code> to <code>cg.identifier.cpwfproject</code> and then the rest to <code>dc.description.sponsorship</code></li>
|
||||
</ul>
|
||||
|
||||
<p></p>
|
||||
<a href='https://alanorth.github.io/cgspace-notes/2016-06/'>Read more →</a>
|
||||
</article>
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
<article class="blog-post">
|
||||
<header>
|
||||
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-05/">May, 2016</a></h2>
|
||||
|
|
@ -296,7 +325,7 @@
|
|||
<article class="blog-post">
|
||||
<header>
|
||||
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/posts/">Posts</a></h2>
|
||||
<p class="blog-post-meta"><time datetime="2018-10-01T22:31:54+03:00">Mon Oct 01, 2018</time> by Alan Orth</p>
|
||||
<p class="blog-post-meta"><time datetime="2018-11-01T16:41:30+02:00">Thu Nov 01, 2018</time> by Alan Orth</p>
|
||||
</header>
|
||||
|
||||
<a href='https://alanorth.github.io/cgspace-notes/posts/'>Read more →</a>
|
||||
|
|
@ -330,6 +359,8 @@
|
|||
<ol class="list-unstyled">
|
||||
|
||||
|
||||
<li><a href="/cgspace-notes/2018-11/">November, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-10/">October, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-09/">September, 2018</a></li>
|
||||
|
|
@ -338,8 +369,6 @@
|
|||
|
||||
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
|
||||
|
||||
</ol>
|
||||
</section>
|
||||
|
||||
|
|
|
|||
|
|
@ -1,6 +1,7 @@
|
|||
User-agent: *
|
||||
|
||||
|
||||
Disallow: /cgspace-notes/2018-11/
|
||||
Disallow: /cgspace-notes/2018-10/
|
||||
Disallow: /cgspace-notes/2018-09/
|
||||
Disallow: /cgspace-notes/2018-08/
|
||||
|
|
|
|||
|
|
@ -2,9 +2,14 @@
|
|||
<urlset xmlns="http://www.sitemaps.org/schemas/sitemap/0.9"
|
||||
xmlns:xhtml="http://www.w3.org/1999/xhtml">
|
||||
|
||||
<url>
|
||||
<loc>https://alanorth.github.io/cgspace-notes/2018-11/</loc>
|
||||
<lastmod>2018-11-01T16:41:30+02:00</lastmod>
|
||||
</url>
|
||||
|
||||
<url>
|
||||
<loc>https://alanorth.github.io/cgspace-notes/2018-10/</loc>
|
||||
<lastmod>2018-10-30T14:13:08+02:00</lastmod>
|
||||
<lastmod>2018-11-01T16:42:20+02:00</lastmod>
|
||||
</url>
|
||||
|
||||
<url>
|
||||
|
|
@ -189,7 +194,7 @@
|
|||
|
||||
<url>
|
||||
<loc>https://alanorth.github.io/cgspace-notes/</loc>
|
||||
<lastmod>2018-10-30T14:13:08+02:00</lastmod>
|
||||
<lastmod>2018-11-01T16:41:30+02:00</lastmod>
|
||||
<priority>0</priority>
|
||||
</url>
|
||||
|
||||
|
|
@ -200,7 +205,7 @@
|
|||
|
||||
<url>
|
||||
<loc>https://alanorth.github.io/cgspace-notes/tags/notes/</loc>
|
||||
<lastmod>2018-10-30T14:13:08+02:00</lastmod>
|
||||
<lastmod>2018-11-01T16:41:30+02:00</lastmod>
|
||||
<priority>0</priority>
|
||||
</url>
|
||||
|
||||
|
|
@ -212,13 +217,13 @@
|
|||
|
||||
<url>
|
||||
<loc>https://alanorth.github.io/cgspace-notes/posts/</loc>
|
||||
<lastmod>2018-10-30T14:13:08+02:00</lastmod>
|
||||
<lastmod>2018-11-01T16:41:30+02:00</lastmod>
|
||||
<priority>0</priority>
|
||||
</url>
|
||||
|
||||
<url>
|
||||
<loc>https://alanorth.github.io/cgspace-notes/tags/</loc>
|
||||
<lastmod>2018-10-30T14:13:08+02:00</lastmod>
|
||||
<lastmod>2018-11-01T16:41:30+02:00</lastmod>
|
||||
<priority>0</priority>
|
||||
</url>
|
||||
|
||||
|
|
|
|||
|
|
@ -9,7 +9,7 @@
|
|||
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
|
||||
<meta property="og:type" content="website" />
|
||||
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/tags/" />
|
||||
<meta property="og:updated_time" content="2018-10-01T22:31:54+03:00"/>
|
||||
<meta property="og:updated_time" content="2018-11-01T16:41:30+02:00"/>
|
||||
|
||||
<meta name="twitter:card" content="summary"/>
|
||||
<meta name="twitter:title" content="Tags"/>
|
||||
|
|
@ -28,7 +28,7 @@
|
|||
"@type": "Person",
|
||||
"name": "Alan Orth"
|
||||
},
|
||||
"dateModified": "2018-10-01T22:31:54+03:00",
|
||||
"dateModified": "2018-11-01T16:41:30+02:00",
|
||||
"keywords": "notes,notes,",
|
||||
"description": "Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
|
||||
}
|
||||
|
|
@ -89,6 +89,31 @@
|
|||
|
||||
|
||||
|
||||
<article class="blog-post">
|
||||
<header>
|
||||
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2018-11/">November, 2018</a></h2>
|
||||
<p class="blog-post-meta"><time datetime="2018-11-01T16:41:30+02:00">Thu Nov 01, 2018</time> by Alan Orth in
|
||||
|
||||
<i class="fa fa-tag" aria-hidden="true"></i> <a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
|
||||
|
||||
</p>
|
||||
</header>
|
||||
<h2 id="2018-11-01">2018-11-01</h2>
|
||||
|
||||
<ul>
|
||||
<li>Finalize AReS Phase I and Phase II ToRs</li>
|
||||
<li>Send a note about my <a href="https://github.com/ilri/dspace-statistics-api">dspace-statistics-api</a> to the dspace-tech mailing list</li>
|
||||
</ul>
|
||||
|
||||
<p></p>
|
||||
<a href='https://alanorth.github.io/cgspace-notes/2018-11/'>Read more →</a>
|
||||
</article>
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
<article class="blog-post">
|
||||
<header>
|
||||
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2018-10/">October, 2018</a></h2>
|
||||
|
|
@ -98,7 +123,14 @@
|
|||
|
||||
</p>
|
||||
</header>
|
||||
2018-10-01 Phil Thornton got an ORCID identifier so we need to add it to the list on CGSpace and tag his existing items I created a GitHub issue to track this #389, because I’m super busy in Nairobi right now 2018-10-03 I see Moayad was busy collecting item views and downloads from CGSpace yesterday: # zcat --force /var/log/nginx/*.log /var/log/nginx/*.log.1 | grep -E "02/Oct/2018" | awk '{print $1} ' | sort | uniq -c | sort -n | tail -n 10 933 40.
|
||||
<h2 id="2018-10-01">2018-10-01</h2>
|
||||
|
||||
<ul>
|
||||
<li>Phil Thornton got an ORCID identifier so we need to add it to the list on CGSpace and tag his existing items</li>
|
||||
<li>I created a GitHub issue to track this <a href="https://github.com/ilri/DSpace/issues/389">#389</a>, because I’m super busy in Nairobi right now</li>
|
||||
</ul>
|
||||
|
||||
<p></p>
|
||||
<a href='https://alanorth.github.io/cgspace-notes/2018-10/'>Read more →</a>
|
||||
</article>
|
||||
|
||||
|
|
@ -357,102 +389,6 @@ sys 2m7.289s
|
|||
|
||||
|
||||
|
||||
|
||||
<article class="blog-post">
|
||||
<header>
|
||||
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2018-01/">January, 2018</a></h2>
|
||||
<p class="blog-post-meta"><time datetime="2018-01-02T08:35:54-08:00">Tue Jan 02, 2018</time> by Alan Orth in
|
||||
|
||||
<i class="fa fa-tag" aria-hidden="true"></i> <a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
|
||||
|
||||
</p>
|
||||
</header>
|
||||
<h2 id="2018-01-02">2018-01-02</h2>
|
||||
|
||||
<ul>
|
||||
<li>Uptime Robot noticed that CGSpace went down and up a few times last night, for a few minutes each time</li>
|
||||
<li>I didn’t get any load alerts from Linode and the REST and XMLUI logs don’t show anything out of the ordinary</li>
|
||||
<li>The nginx logs show HTTP 200s until <code>02/Jan/2018:11:27:17 +0000</code> when Uptime Robot got an HTTP 500</li>
|
||||
<li>In dspace.log around that time I see many errors like “Client closed the connection before file download was complete”</li>
|
||||
<li>And just before that I see this:</li>
|
||||
</ul>
|
||||
|
||||
<pre><code>Caused by: org.apache.tomcat.jdbc.pool.PoolExhaustedException: [http-bio-127.0.0.1-8443-exec-980] Timeout: Pool empty. Unable to fetch a connection in 5 seconds, none available[size:50; busy:50; idle:0; lastwait:5000].
|
||||
</code></pre>
|
||||
|
||||
<ul>
|
||||
<li>Ah hah! So the pool was actually empty!</li>
|
||||
<li>I need to increase that, let’s try to bump it up from 50 to 75</li>
|
||||
<li>After that one client got an HTTP 499 but then the rest were HTTP 200, so I don’t know what the hell Uptime Robot saw</li>
|
||||
<li>I notice this error quite a few times in dspace.log:</li>
|
||||
</ul>
|
||||
|
||||
<pre><code>2018-01-02 01:21:19,137 ERROR org.dspace.app.xmlui.aspect.discovery.SidebarFacetsTransformer @ Error while searching for sidebar facets
|
||||
org.dspace.discovery.SearchServiceException: org.apache.solr.search.SyntaxError: Cannot parse 'dateIssued_keyword:[1976+TO+1979]': Encountered " "]" "] "" at line 1, column 32.
|
||||
</code></pre>
|
||||
|
||||
<ul>
|
||||
<li>And there are many of these errors every day for the past month:</li>
|
||||
</ul>
|
||||
|
||||
<pre><code>$ grep -c "Error while searching for sidebar facets" dspace.log.*
|
||||
dspace.log.2017-11-21:4
|
||||
dspace.log.2017-11-22:1
|
||||
dspace.log.2017-11-23:4
|
||||
dspace.log.2017-11-24:11
|
||||
dspace.log.2017-11-25:0
|
||||
dspace.log.2017-11-26:1
|
||||
dspace.log.2017-11-27:7
|
||||
dspace.log.2017-11-28:21
|
||||
dspace.log.2017-11-29:31
|
||||
dspace.log.2017-11-30:15
|
||||
dspace.log.2017-12-01:15
|
||||
dspace.log.2017-12-02:20
|
||||
dspace.log.2017-12-03:38
|
||||
dspace.log.2017-12-04:65
|
||||
dspace.log.2017-12-05:43
|
||||
dspace.log.2017-12-06:72
|
||||
dspace.log.2017-12-07:27
|
||||
dspace.log.2017-12-08:15
|
||||
dspace.log.2017-12-09:29
|
||||
dspace.log.2017-12-10:35
|
||||
dspace.log.2017-12-11:20
|
||||
dspace.log.2017-12-12:44
|
||||
dspace.log.2017-12-13:36
|
||||
dspace.log.2017-12-14:59
|
||||
dspace.log.2017-12-15:104
|
||||
dspace.log.2017-12-16:53
|
||||
dspace.log.2017-12-17:66
|
||||
dspace.log.2017-12-18:83
|
||||
dspace.log.2017-12-19:101
|
||||
dspace.log.2017-12-20:74
|
||||
dspace.log.2017-12-21:55
|
||||
dspace.log.2017-12-22:66
|
||||
dspace.log.2017-12-23:50
|
||||
dspace.log.2017-12-24:85
|
||||
dspace.log.2017-12-25:62
|
||||
dspace.log.2017-12-26:49
|
||||
dspace.log.2017-12-27:30
|
||||
dspace.log.2017-12-28:54
|
||||
dspace.log.2017-12-29:68
|
||||
dspace.log.2017-12-30:89
|
||||
dspace.log.2017-12-31:53
|
||||
dspace.log.2018-01-01:45
|
||||
dspace.log.2018-01-02:34
|
||||
</code></pre>
|
||||
|
||||
<ul>
|
||||
<li>Danny wrote to ask for help renewing the wildcard ilri.org certificate and I advised that we should probably use Let’s Encrypt if it’s just a handful of domains</li>
|
||||
</ul>
|
||||
|
||||
<p></p>
|
||||
<a href='https://alanorth.github.io/cgspace-notes/2018-01/'>Read more →</a>
|
||||
</article>
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
<nav class="blog-pagination">
|
||||
|
||||
|
||||
|
|
@ -477,6 +413,8 @@ dspace.log.2018-01-02:34
|
|||
<ol class="list-unstyled">
|
||||
|
||||
|
||||
<li><a href="/cgspace-notes/2018-11/">November, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-10/">October, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-09/">September, 2018</a></li>
|
||||
|
|
@ -485,8 +423,6 @@ dspace.log.2018-01-02:34
|
|||
|
||||
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
|
||||
|
||||
</ol>
|
||||
</section>
|
||||
|
||||
|
|
|
|||
|
|
@ -6,7 +6,7 @@
|
|||
<description>Recent content in Tags on CGSpace Notes</description>
|
||||
<generator>Hugo -- gohugo.io</generator>
|
||||
<language>en-us</language>
|
||||
<lastBuildDate>Mon, 01 Oct 2018 22:31:54 +0300</lastBuildDate>
|
||||
<lastBuildDate>Thu, 01 Nov 2018 16:41:30 +0200</lastBuildDate>
|
||||
|
||||
<atom:link href="https://alanorth.github.io/cgspace-notes/tags/index.xml" rel="self" type="application/rss+xml" />
|
||||
|
||||
|
|
@ -14,7 +14,7 @@
|
|||
<item>
|
||||
<title>Notes</title>
|
||||
<link>https://alanorth.github.io/cgspace-notes/tags/notes/</link>
|
||||
<pubDate>Mon, 01 Oct 2018 22:31:54 +0300</pubDate>
|
||||
<pubDate>Thu, 01 Nov 2018 16:41:30 +0200</pubDate>
|
||||
|
||||
<guid>https://alanorth.github.io/cgspace-notes/tags/notes/</guid>
|
||||
<description></description>
|
||||
|
|
|
|||
|
|
@ -9,7 +9,7 @@
|
|||
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
|
||||
<meta property="og:type" content="website" />
|
||||
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/tags/notes/" />
|
||||
<meta property="og:updated_time" content="2018-10-01T22:31:54+03:00"/>
|
||||
<meta property="og:updated_time" content="2018-11-01T16:41:30+02:00"/>
|
||||
|
||||
<meta name="twitter:card" content="summary"/>
|
||||
<meta name="twitter:title" content="Notes"/>
|
||||
|
|
@ -74,6 +74,31 @@
|
|||
|
||||
|
||||
|
||||
<article class="blog-post">
|
||||
<header>
|
||||
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2018-11/">November, 2018</a></h2>
|
||||
<p class="blog-post-meta"><time datetime="2018-11-01T16:41:30+02:00">Thu Nov 01, 2018</time> by Alan Orth in
|
||||
|
||||
<i class="fa fa-tag" aria-hidden="true"></i> <a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
|
||||
|
||||
</p>
|
||||
</header>
|
||||
<h2 id="2018-11-01">2018-11-01</h2>
|
||||
|
||||
<ul>
|
||||
<li>Finalize AReS Phase I and Phase II ToRs</li>
|
||||
<li>Send a note about my <a href="https://github.com/ilri/dspace-statistics-api">dspace-statistics-api</a> to the dspace-tech mailing list</li>
|
||||
</ul>
|
||||
|
||||
<p></p>
|
||||
<a href='https://alanorth.github.io/cgspace-notes/2018-11/'>Read more →</a>
|
||||
</article>
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
<article class="blog-post">
|
||||
<header>
|
||||
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2018-10/">October, 2018</a></h2>
|
||||
|
|
@ -83,7 +108,14 @@
|
|||
|
||||
</p>
|
||||
</header>
|
||||
2018-10-01 Phil Thornton got an ORCID identifier so we need to add it to the list on CGSpace and tag his existing items I created a GitHub issue to track this #389, because I’m super busy in Nairobi right now 2018-10-03 I see Moayad was busy collecting item views and downloads from CGSpace yesterday: # zcat --force /var/log/nginx/*.log /var/log/nginx/*.log.1 | grep -E "02/Oct/2018" | awk '{print $1} ' | sort | uniq -c | sort -n | tail -n 10 933 40.
|
||||
<h2 id="2018-10-01">2018-10-01</h2>
|
||||
|
||||
<ul>
|
||||
<li>Phil Thornton got an ORCID identifier so we need to add it to the list on CGSpace and tag his existing items</li>
|
||||
<li>I created a GitHub issue to track this <a href="https://github.com/ilri/DSpace/issues/389">#389</a>, because I’m super busy in Nairobi right now</li>
|
||||
</ul>
|
||||
|
||||
<p></p>
|
||||
<a href='https://alanorth.github.io/cgspace-notes/2018-10/'>Read more →</a>
|
||||
</article>
|
||||
|
||||
|
|
@ -342,102 +374,6 @@ sys 2m7.289s
|
|||
|
||||
|
||||
|
||||
|
||||
<article class="blog-post">
|
||||
<header>
|
||||
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2018-01/">January, 2018</a></h2>
|
||||
<p class="blog-post-meta"><time datetime="2018-01-02T08:35:54-08:00">Tue Jan 02, 2018</time> by Alan Orth in
|
||||
|
||||
<i class="fa fa-tag" aria-hidden="true"></i> <a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
|
||||
|
||||
</p>
|
||||
</header>
|
||||
<h2 id="2018-01-02">2018-01-02</h2>
|
||||
|
||||
<ul>
|
||||
<li>Uptime Robot noticed that CGSpace went down and up a few times last night, for a few minutes each time</li>
|
||||
<li>I didn’t get any load alerts from Linode and the REST and XMLUI logs don’t show anything out of the ordinary</li>
|
||||
<li>The nginx logs show HTTP 200s until <code>02/Jan/2018:11:27:17 +0000</code> when Uptime Robot got an HTTP 500</li>
|
||||
<li>In dspace.log around that time I see many errors like “Client closed the connection before file download was complete”</li>
|
||||
<li>And just before that I see this:</li>
|
||||
</ul>
|
||||
|
||||
<pre><code>Caused by: org.apache.tomcat.jdbc.pool.PoolExhaustedException: [http-bio-127.0.0.1-8443-exec-980] Timeout: Pool empty. Unable to fetch a connection in 5 seconds, none available[size:50; busy:50; idle:0; lastwait:5000].
|
||||
</code></pre>
|
||||
|
||||
<ul>
|
||||
<li>Ah hah! So the pool was actually empty!</li>
|
||||
<li>I need to increase that, let’s try to bump it up from 50 to 75</li>
|
||||
<li>After that one client got an HTTP 499 but then the rest were HTTP 200, so I don’t know what the hell Uptime Robot saw</li>
|
||||
<li>I notice this error quite a few times in dspace.log:</li>
|
||||
</ul>
|
||||
|
||||
<pre><code>2018-01-02 01:21:19,137 ERROR org.dspace.app.xmlui.aspect.discovery.SidebarFacetsTransformer @ Error while searching for sidebar facets
|
||||
org.dspace.discovery.SearchServiceException: org.apache.solr.search.SyntaxError: Cannot parse 'dateIssued_keyword:[1976+TO+1979]': Encountered " "]" "] "" at line 1, column 32.
|
||||
</code></pre>
|
||||
|
||||
<ul>
|
||||
<li>And there are many of these errors every day for the past month:</li>
|
||||
</ul>
|
||||
|
||||
<pre><code>$ grep -c "Error while searching for sidebar facets" dspace.log.*
|
||||
dspace.log.2017-11-21:4
|
||||
dspace.log.2017-11-22:1
|
||||
dspace.log.2017-11-23:4
|
||||
dspace.log.2017-11-24:11
|
||||
dspace.log.2017-11-25:0
|
||||
dspace.log.2017-11-26:1
|
||||
dspace.log.2017-11-27:7
|
||||
dspace.log.2017-11-28:21
|
||||
dspace.log.2017-11-29:31
|
||||
dspace.log.2017-11-30:15
|
||||
dspace.log.2017-12-01:15
|
||||
dspace.log.2017-12-02:20
|
||||
dspace.log.2017-12-03:38
|
||||
dspace.log.2017-12-04:65
|
||||
dspace.log.2017-12-05:43
|
||||
dspace.log.2017-12-06:72
|
||||
dspace.log.2017-12-07:27
|
||||
dspace.log.2017-12-08:15
|
||||
dspace.log.2017-12-09:29
|
||||
dspace.log.2017-12-10:35
|
||||
dspace.log.2017-12-11:20
|
||||
dspace.log.2017-12-12:44
|
||||
dspace.log.2017-12-13:36
|
||||
dspace.log.2017-12-14:59
|
||||
dspace.log.2017-12-15:104
|
||||
dspace.log.2017-12-16:53
|
||||
dspace.log.2017-12-17:66
|
||||
dspace.log.2017-12-18:83
|
||||
dspace.log.2017-12-19:101
|
||||
dspace.log.2017-12-20:74
|
||||
dspace.log.2017-12-21:55
|
||||
dspace.log.2017-12-22:66
|
||||
dspace.log.2017-12-23:50
|
||||
dspace.log.2017-12-24:85
|
||||
dspace.log.2017-12-25:62
|
||||
dspace.log.2017-12-26:49
|
||||
dspace.log.2017-12-27:30
|
||||
dspace.log.2017-12-28:54
|
||||
dspace.log.2017-12-29:68
|
||||
dspace.log.2017-12-30:89
|
||||
dspace.log.2017-12-31:53
|
||||
dspace.log.2018-01-01:45
|
||||
dspace.log.2018-01-02:34
|
||||
</code></pre>
|
||||
|
||||
<ul>
|
||||
<li>Danny wrote to ask for help renewing the wildcard ilri.org certificate and I advised that we should probably use Let’s Encrypt if it’s just a handful of domains</li>
|
||||
</ul>
|
||||
|
||||
<p></p>
|
||||
<a href='https://alanorth.github.io/cgspace-notes/2018-01/'>Read more →</a>
|
||||
</article>
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
<nav class="blog-pagination">
|
||||
|
||||
|
||||
|
|
@ -462,6 +398,8 @@ dspace.log.2018-01-02:34
|
|||
<ol class="list-unstyled">
|
||||
|
||||
|
||||
<li><a href="/cgspace-notes/2018-11/">November, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-10/">October, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-09/">September, 2018</a></li>
|
||||
|
|
@ -470,8 +408,6 @@ dspace.log.2018-01-02:34
|
|||
|
||||
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
|
||||
|
||||
</ol>
|
||||
</section>
|
||||
|
||||
|
|
|
|||
|
|
@ -6,18 +6,41 @@
|
|||
<description>Recent content in Notes on CGSpace Notes</description>
|
||||
<generator>Hugo -- gohugo.io</generator>
|
||||
<language>en-us</language>
|
||||
<lastBuildDate>Mon, 01 Oct 2018 22:31:54 +0300</lastBuildDate>
|
||||
<lastBuildDate>Thu, 01 Nov 2018 16:41:30 +0200</lastBuildDate>
|
||||
|
||||
<atom:link href="https://alanorth.github.io/cgspace-notes/tags/notes/index.xml" rel="self" type="application/rss+xml" />
|
||||
|
||||
|
||||
<item>
|
||||
<title>November, 2018</title>
|
||||
<link>https://alanorth.github.io/cgspace-notes/2018-11/</link>
|
||||
<pubDate>Thu, 01 Nov 2018 16:41:30 +0200</pubDate>
|
||||
|
||||
<guid>https://alanorth.github.io/cgspace-notes/2018-11/</guid>
|
||||
<description><h2 id="2018-11-01">2018-11-01</h2>
|
||||
|
||||
<ul>
|
||||
<li>Finalize AReS Phase I and Phase II ToRs</li>
|
||||
<li>Send a note about my <a href="https://github.com/ilri/dspace-statistics-api">dspace-statistics-api</a> to the dspace-tech mailing list</li>
|
||||
</ul>
|
||||
|
||||
<p></p></description>
|
||||
</item>
|
||||
|
||||
<item>
|
||||
<title>October, 2018</title>
|
||||
<link>https://alanorth.github.io/cgspace-notes/2018-10/</link>
|
||||
<pubDate>Mon, 01 Oct 2018 22:31:54 +0300</pubDate>
|
||||
|
||||
<guid>https://alanorth.github.io/cgspace-notes/2018-10/</guid>
|
||||
<description>2018-10-01 Phil Thornton got an ORCID identifier so we need to add it to the list on CGSpace and tag his existing items I created a GitHub issue to track this #389, because I&rsquo;m super busy in Nairobi right now 2018-10-03 I see Moayad was busy collecting item views and downloads from CGSpace yesterday: # zcat --force /var/log/nginx/*.log /var/log/nginx/*.log.1 | grep -E &quot;02/Oct/2018&quot; | awk '{print $1} ' | sort | uniq -c | sort -n | tail -n 10 933 40.</description>
|
||||
<description><h2 id="2018-10-01">2018-10-01</h2>
|
||||
|
||||
<ul>
|
||||
<li>Phil Thornton got an ORCID identifier so we need to add it to the list on CGSpace and tag his existing items</li>
|
||||
<li>I created a GitHub issue to track this <a href="https://github.com/ilri/DSpace/issues/389">#389</a>, because I&rsquo;m super busy in Nairobi right now</li>
|
||||
</ul>
|
||||
|
||||
<p></p></description>
|
||||
</item>
|
||||
|
||||
<item>
|
||||
|
|
|
|||
|
|
@ -9,7 +9,7 @@
|
|||
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
|
||||
<meta property="og:type" content="website" />
|
||||
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/tags/notes/" />
|
||||
<meta property="og:updated_time" content="2017-12-01T13:53:54+03:00"/>
|
||||
<meta property="og:updated_time" content="2018-01-02T08:35:54-08:00"/>
|
||||
|
||||
<meta name="twitter:card" content="summary"/>
|
||||
<meta name="twitter:title" content="Notes"/>
|
||||
|
|
@ -74,6 +74,102 @@
|
|||
|
||||
|
||||
|
||||
<article class="blog-post">
|
||||
<header>
|
||||
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2018-01/">January, 2018</a></h2>
|
||||
<p class="blog-post-meta"><time datetime="2018-01-02T08:35:54-08:00">Tue Jan 02, 2018</time> by Alan Orth in
|
||||
|
||||
<i class="fa fa-tag" aria-hidden="true"></i> <a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
|
||||
|
||||
</p>
|
||||
</header>
|
||||
<h2 id="2018-01-02">2018-01-02</h2>
|
||||
|
||||
<ul>
|
||||
<li>Uptime Robot noticed that CGSpace went down and up a few times last night, for a few minutes each time</li>
|
||||
<li>I didn’t get any load alerts from Linode and the REST and XMLUI logs don’t show anything out of the ordinary</li>
|
||||
<li>The nginx logs show HTTP 200s until <code>02/Jan/2018:11:27:17 +0000</code> when Uptime Robot got an HTTP 500</li>
|
||||
<li>In dspace.log around that time I see many errors like “Client closed the connection before file download was complete”</li>
|
||||
<li>And just before that I see this:</li>
|
||||
</ul>
|
||||
|
||||
<pre><code>Caused by: org.apache.tomcat.jdbc.pool.PoolExhaustedException: [http-bio-127.0.0.1-8443-exec-980] Timeout: Pool empty. Unable to fetch a connection in 5 seconds, none available[size:50; busy:50; idle:0; lastwait:5000].
|
||||
</code></pre>
|
||||
|
||||
<ul>
|
||||
<li>Ah hah! So the pool was actually empty!</li>
|
||||
<li>I need to increase that, let’s try to bump it up from 50 to 75</li>
|
||||
<li>After that one client got an HTTP 499 but then the rest were HTTP 200, so I don’t know what the hell Uptime Robot saw</li>
|
||||
<li>I notice this error quite a few times in dspace.log:</li>
|
||||
</ul>
|
||||
|
||||
<pre><code>2018-01-02 01:21:19,137 ERROR org.dspace.app.xmlui.aspect.discovery.SidebarFacetsTransformer @ Error while searching for sidebar facets
|
||||
org.dspace.discovery.SearchServiceException: org.apache.solr.search.SyntaxError: Cannot parse 'dateIssued_keyword:[1976+TO+1979]': Encountered " "]" "] "" at line 1, column 32.
|
||||
</code></pre>
|
||||
|
||||
<ul>
|
||||
<li>And there are many of these errors every day for the past month:</li>
|
||||
</ul>
|
||||
|
||||
<pre><code>$ grep -c "Error while searching for sidebar facets" dspace.log.*
|
||||
dspace.log.2017-11-21:4
|
||||
dspace.log.2017-11-22:1
|
||||
dspace.log.2017-11-23:4
|
||||
dspace.log.2017-11-24:11
|
||||
dspace.log.2017-11-25:0
|
||||
dspace.log.2017-11-26:1
|
||||
dspace.log.2017-11-27:7
|
||||
dspace.log.2017-11-28:21
|
||||
dspace.log.2017-11-29:31
|
||||
dspace.log.2017-11-30:15
|
||||
dspace.log.2017-12-01:15
|
||||
dspace.log.2017-12-02:20
|
||||
dspace.log.2017-12-03:38
|
||||
dspace.log.2017-12-04:65
|
||||
dspace.log.2017-12-05:43
|
||||
dspace.log.2017-12-06:72
|
||||
dspace.log.2017-12-07:27
|
||||
dspace.log.2017-12-08:15
|
||||
dspace.log.2017-12-09:29
|
||||
dspace.log.2017-12-10:35
|
||||
dspace.log.2017-12-11:20
|
||||
dspace.log.2017-12-12:44
|
||||
dspace.log.2017-12-13:36
|
||||
dspace.log.2017-12-14:59
|
||||
dspace.log.2017-12-15:104
|
||||
dspace.log.2017-12-16:53
|
||||
dspace.log.2017-12-17:66
|
||||
dspace.log.2017-12-18:83
|
||||
dspace.log.2017-12-19:101
|
||||
dspace.log.2017-12-20:74
|
||||
dspace.log.2017-12-21:55
|
||||
dspace.log.2017-12-22:66
|
||||
dspace.log.2017-12-23:50
|
||||
dspace.log.2017-12-24:85
|
||||
dspace.log.2017-12-25:62
|
||||
dspace.log.2017-12-26:49
|
||||
dspace.log.2017-12-27:30
|
||||
dspace.log.2017-12-28:54
|
||||
dspace.log.2017-12-29:68
|
||||
dspace.log.2017-12-30:89
|
||||
dspace.log.2017-12-31:53
|
||||
dspace.log.2018-01-01:45
|
||||
dspace.log.2018-01-02:34
|
||||
</code></pre>
|
||||
|
||||
<ul>
|
||||
<li>Danny wrote to ask for help renewing the wildcard ilri.org certificate and I advised that we should probably use Let’s Encrypt if it’s just a handful of domains</li>
|
||||
</ul>
|
||||
|
||||
<p></p>
|
||||
<a href='https://alanorth.github.io/cgspace-notes/2018-01/'>Read more →</a>
|
||||
</article>
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
<article class="blog-post">
|
||||
<header>
|
||||
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2017-12/">December, 2017</a></h2>
|
||||
|
|
@ -349,48 +445,6 @@ COPY 54701
|
|||
|
||||
|
||||
|
||||
|
||||
<article class="blog-post">
|
||||
<header>
|
||||
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2017-03/">March, 2017</a></h2>
|
||||
<p class="blog-post-meta"><time datetime="2017-03-01T17:08:52+02:00">Wed Mar 01, 2017</time> by Alan Orth in
|
||||
|
||||
<i class="fa fa-tag" aria-hidden="true"></i> <a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
|
||||
|
||||
</p>
|
||||
</header>
|
||||
<h2 id="2017-03-01">2017-03-01</h2>
|
||||
|
||||
<ul>
|
||||
<li>Run the 279 CIAT author corrections on CGSpace</li>
|
||||
</ul>
|
||||
|
||||
<h2 id="2017-03-02">2017-03-02</h2>
|
||||
|
||||
<ul>
|
||||
<li>Skype with Michael and Peter, discussing moving the CGIAR Library to CGSpace</li>
|
||||
<li>CGIAR people possibly open to moving content, redirecting library.cgiar.org to CGSpace and letting CGSpace resolve their handles</li>
|
||||
<li>They might come in at the top level in one “CGIAR System” community, or with several communities</li>
|
||||
<li>I need to spend a bit of time looking at the multiple handle support in DSpace and see if new content can be minted in both handles, or just one?</li>
|
||||
<li>Need to send Peter and Michael some notes about this in a few days</li>
|
||||
<li>Also, need to consider talking to Atmire about hiring them to bring ORCiD metadata to REST / OAI</li>
|
||||
<li>Filed an issue on DSpace issue tracker for the <code>filter-media</code> bug that causes it to process JPGs even when limiting to the PDF thumbnail plugin: <a href="https://jira.duraspace.org/browse/DS-3516">DS-3516</a></li>
|
||||
<li>Discovered that the ImageMagic <code>filter-media</code> plugin creates JPG thumbnails with the CMYK colorspace when the source PDF is using CMYK</li>
|
||||
<li>Interestingly, it seems DSpace 4.x’s thumbnails were sRGB, but forcing regeneration using DSpace 5.x’s ImageMagick plugin creates CMYK JPGs if the source PDF was CMYK (see <a href="https://cgspace.cgiar.org/handle/10568/51999"><sup>10568</sup>⁄<sub>51999</sub></a>):</li>
|
||||
</ul>
|
||||
|
||||
<pre><code>$ identify ~/Desktop/alc_contrastes_desafios.jpg
|
||||
/Users/aorth/Desktop/alc_contrastes_desafios.jpg JPEG 464x600 464x600+0+0 8-bit CMYK 168KB 0.000u 0:00.000
|
||||
</code></pre>
|
||||
|
||||
<p></p>
|
||||
<a href='https://alanorth.github.io/cgspace-notes/2017-03/'>Read more →</a>
|
||||
</article>
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
<nav class="blog-pagination">
|
||||
|
||||
<a class="btn btn-outline-primary" href="/cgspace-notes/tags/notes/" rel="prev" role="button">Previous page</a>
|
||||
|
|
@ -415,6 +469,8 @@ COPY 54701
|
|||
<ol class="list-unstyled">
|
||||
|
||||
|
||||
<li><a href="/cgspace-notes/2018-11/">November, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-10/">October, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-09/">September, 2018</a></li>
|
||||
|
|
@ -423,8 +479,6 @@ COPY 54701
|
|||
|
||||
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
|
||||
|
||||
</ol>
|
||||
</section>
|
||||
|
||||
|
|
|
|||
|
|
@ -9,7 +9,7 @@
|
|||
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
|
||||
<meta property="og:type" content="website" />
|
||||
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/tags/notes/" />
|
||||
<meta property="og:updated_time" content="2017-02-07T07:04:52-08:00"/>
|
||||
<meta property="og:updated_time" content="2017-03-01T17:08:52+02:00"/>
|
||||
|
||||
<meta name="twitter:card" content="summary"/>
|
||||
<meta name="twitter:title" content="Notes"/>
|
||||
|
|
@ -74,6 +74,48 @@
|
|||
|
||||
|
||||
|
||||
<article class="blog-post">
|
||||
<header>
|
||||
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2017-03/">March, 2017</a></h2>
|
||||
<p class="blog-post-meta"><time datetime="2017-03-01T17:08:52+02:00">Wed Mar 01, 2017</time> by Alan Orth in
|
||||
|
||||
<i class="fa fa-tag" aria-hidden="true"></i> <a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
|
||||
|
||||
</p>
|
||||
</header>
|
||||
<h2 id="2017-03-01">2017-03-01</h2>
|
||||
|
||||
<ul>
|
||||
<li>Run the 279 CIAT author corrections on CGSpace</li>
|
||||
</ul>
|
||||
|
||||
<h2 id="2017-03-02">2017-03-02</h2>
|
||||
|
||||
<ul>
|
||||
<li>Skype with Michael and Peter, discussing moving the CGIAR Library to CGSpace</li>
|
||||
<li>CGIAR people possibly open to moving content, redirecting library.cgiar.org to CGSpace and letting CGSpace resolve their handles</li>
|
||||
<li>They might come in at the top level in one “CGIAR System” community, or with several communities</li>
|
||||
<li>I need to spend a bit of time looking at the multiple handle support in DSpace and see if new content can be minted in both handles, or just one?</li>
|
||||
<li>Need to send Peter and Michael some notes about this in a few days</li>
|
||||
<li>Also, need to consider talking to Atmire about hiring them to bring ORCiD metadata to REST / OAI</li>
|
||||
<li>Filed an issue on DSpace issue tracker for the <code>filter-media</code> bug that causes it to process JPGs even when limiting to the PDF thumbnail plugin: <a href="https://jira.duraspace.org/browse/DS-3516">DS-3516</a></li>
|
||||
<li>Discovered that the ImageMagic <code>filter-media</code> plugin creates JPG thumbnails with the CMYK colorspace when the source PDF is using CMYK</li>
|
||||
<li>Interestingly, it seems DSpace 4.x’s thumbnails were sRGB, but forcing regeneration using DSpace 5.x’s ImageMagick plugin creates CMYK JPGs if the source PDF was CMYK (see <a href="https://cgspace.cgiar.org/handle/10568/51999"><sup>10568</sup>⁄<sub>51999</sub></a>):</li>
|
||||
</ul>
|
||||
|
||||
<pre><code>$ identify ~/Desktop/alc_contrastes_desafios.jpg
|
||||
/Users/aorth/Desktop/alc_contrastes_desafios.jpg JPEG 464x600 464x600+0+0 8-bit CMYK 168KB 0.000u 0:00.000
|
||||
</code></pre>
|
||||
|
||||
<p></p>
|
||||
<a href='https://alanorth.github.io/cgspace-notes/2017-03/'>Read more →</a>
|
||||
</article>
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
<article class="blog-post">
|
||||
<header>
|
||||
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2017-02/">February, 2017</a></h2>
|
||||
|
|
@ -367,36 +409,6 @@ dspacetest=# select text_value from metadatavalue where metadata_field_id=3 and
|
|||
|
||||
|
||||
|
||||
|
||||
<article class="blog-post">
|
||||
<header>
|
||||
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-05/">May, 2016</a></h2>
|
||||
<p class="blog-post-meta"><time datetime="2016-05-01T23:06:00+03:00">Sun May 01, 2016</time> by Alan Orth in
|
||||
|
||||
<i class="fa fa-tag" aria-hidden="true"></i> <a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
|
||||
|
||||
</p>
|
||||
</header>
|
||||
<h2 id="2016-05-01">2016-05-01</h2>
|
||||
|
||||
<ul>
|
||||
<li>Since yesterday there have been 10,000 REST errors and the site has been unstable again</li>
|
||||
<li>I have blocked access to the API now</li>
|
||||
<li>There are 3,000 IPs accessing the REST API in a 24-hour period!</li>
|
||||
</ul>
|
||||
|
||||
<pre><code># awk '{print $1}' /var/log/nginx/rest.log | uniq | wc -l
|
||||
3168
|
||||
</code></pre>
|
||||
|
||||
<p></p>
|
||||
<a href='https://alanorth.github.io/cgspace-notes/2016-05/'>Read more →</a>
|
||||
</article>
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
<nav class="blog-pagination">
|
||||
|
||||
<a class="btn btn-outline-primary" href="/cgspace-notes/tags/notes/page/2/" rel="prev" role="button">Previous page</a>
|
||||
|
|
@ -421,6 +433,8 @@ dspacetest=# select text_value from metadatavalue where metadata_field_id=3 and
|
|||
<ol class="list-unstyled">
|
||||
|
||||
|
||||
<li><a href="/cgspace-notes/2018-11/">November, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-10/">October, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-09/">September, 2018</a></li>
|
||||
|
|
@ -429,8 +443,6 @@ dspacetest=# select text_value from metadatavalue where metadata_field_id=3 and
|
|||
|
||||
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
|
||||
|
||||
</ol>
|
||||
</section>
|
||||
|
||||
|
|
|
|||
|
|
@ -9,7 +9,7 @@
|
|||
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
|
||||
<meta property="og:type" content="website" />
|
||||
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/tags/notes/" />
|
||||
<meta property="og:updated_time" content="2016-04-04T11:06:00+03:00"/>
|
||||
<meta property="og:updated_time" content="2016-05-01T23:06:00+03:00"/>
|
||||
|
||||
<meta name="twitter:card" content="summary"/>
|
||||
<meta name="twitter:title" content="Notes"/>
|
||||
|
|
@ -74,6 +74,36 @@
|
|||
|
||||
|
||||
|
||||
<article class="blog-post">
|
||||
<header>
|
||||
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-05/">May, 2016</a></h2>
|
||||
<p class="blog-post-meta"><time datetime="2016-05-01T23:06:00+03:00">Sun May 01, 2016</time> by Alan Orth in
|
||||
|
||||
<i class="fa fa-tag" aria-hidden="true"></i> <a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
|
||||
|
||||
</p>
|
||||
</header>
|
||||
<h2 id="2016-05-01">2016-05-01</h2>
|
||||
|
||||
<ul>
|
||||
<li>Since yesterday there have been 10,000 REST errors and the site has been unstable again</li>
|
||||
<li>I have blocked access to the API now</li>
|
||||
<li>There are 3,000 IPs accessing the REST API in a 24-hour period!</li>
|
||||
</ul>
|
||||
|
||||
<pre><code># awk '{print $1}' /var/log/nginx/rest.log | uniq | wc -l
|
||||
3168
|
||||
</code></pre>
|
||||
|
||||
<p></p>
|
||||
<a href='https://alanorth.github.io/cgspace-notes/2016-05/'>Read more →</a>
|
||||
</article>
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
<article class="blog-post">
|
||||
<header>
|
||||
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-04/">April, 2016</a></h2>
|
||||
|
|
@ -271,6 +301,8 @@
|
|||
<ol class="list-unstyled">
|
||||
|
||||
|
||||
<li><a href="/cgspace-notes/2018-11/">November, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-10/">October, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-09/">September, 2018</a></li>
|
||||
|
|
@ -279,8 +311,6 @@
|
|||
|
||||
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
|
||||
|
||||
</ol>
|
||||
</section>
|
||||
|
||||
|
|
|
|||
|
|
@ -9,7 +9,7 @@
|
|||
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
|
||||
<meta property="og:type" content="website" />
|
||||
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/tags/" />
|
||||
<meta property="og:updated_time" content="2017-12-01T13:53:54+03:00"/>
|
||||
<meta property="og:updated_time" content="2018-01-02T08:35:54-08:00"/>
|
||||
|
||||
<meta name="twitter:card" content="summary"/>
|
||||
<meta name="twitter:title" content="Tags"/>
|
||||
|
|
@ -28,7 +28,7 @@
|
|||
"@type": "Person",
|
||||
"name": "Alan Orth"
|
||||
},
|
||||
"dateModified": "2017-12-01T13:53:54+03:00",
|
||||
"dateModified": "2018-01-02T08:35:54-08:00",
|
||||
"keywords": "notes,notes,",
|
||||
"description": "Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
|
||||
}
|
||||
|
|
@ -89,6 +89,102 @@
|
|||
|
||||
|
||||
|
||||
<article class="blog-post">
|
||||
<header>
|
||||
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2018-01/">January, 2018</a></h2>
|
||||
<p class="blog-post-meta"><time datetime="2018-01-02T08:35:54-08:00">Tue Jan 02, 2018</time> by Alan Orth in
|
||||
|
||||
<i class="fa fa-tag" aria-hidden="true"></i> <a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
|
||||
|
||||
</p>
|
||||
</header>
|
||||
<h2 id="2018-01-02">2018-01-02</h2>
|
||||
|
||||
<ul>
|
||||
<li>Uptime Robot noticed that CGSpace went down and up a few times last night, for a few minutes each time</li>
|
||||
<li>I didn’t get any load alerts from Linode and the REST and XMLUI logs don’t show anything out of the ordinary</li>
|
||||
<li>The nginx logs show HTTP 200s until <code>02/Jan/2018:11:27:17 +0000</code> when Uptime Robot got an HTTP 500</li>
|
||||
<li>In dspace.log around that time I see many errors like “Client closed the connection before file download was complete”</li>
|
||||
<li>And just before that I see this:</li>
|
||||
</ul>
|
||||
|
||||
<pre><code>Caused by: org.apache.tomcat.jdbc.pool.PoolExhaustedException: [http-bio-127.0.0.1-8443-exec-980] Timeout: Pool empty. Unable to fetch a connection in 5 seconds, none available[size:50; busy:50; idle:0; lastwait:5000].
|
||||
</code></pre>
|
||||
|
||||
<ul>
|
||||
<li>Ah hah! So the pool was actually empty!</li>
|
||||
<li>I need to increase that, let’s try to bump it up from 50 to 75</li>
|
||||
<li>After that one client got an HTTP 499 but then the rest were HTTP 200, so I don’t know what the hell Uptime Robot saw</li>
|
||||
<li>I notice this error quite a few times in dspace.log:</li>
|
||||
</ul>
|
||||
|
||||
<pre><code>2018-01-02 01:21:19,137 ERROR org.dspace.app.xmlui.aspect.discovery.SidebarFacetsTransformer @ Error while searching for sidebar facets
|
||||
org.dspace.discovery.SearchServiceException: org.apache.solr.search.SyntaxError: Cannot parse 'dateIssued_keyword:[1976+TO+1979]': Encountered " "]" "] "" at line 1, column 32.
|
||||
</code></pre>
|
||||
|
||||
<ul>
|
||||
<li>And there are many of these errors every day for the past month:</li>
|
||||
</ul>
|
||||
|
||||
<pre><code>$ grep -c "Error while searching for sidebar facets" dspace.log.*
|
||||
dspace.log.2017-11-21:4
|
||||
dspace.log.2017-11-22:1
|
||||
dspace.log.2017-11-23:4
|
||||
dspace.log.2017-11-24:11
|
||||
dspace.log.2017-11-25:0
|
||||
dspace.log.2017-11-26:1
|
||||
dspace.log.2017-11-27:7
|
||||
dspace.log.2017-11-28:21
|
||||
dspace.log.2017-11-29:31
|
||||
dspace.log.2017-11-30:15
|
||||
dspace.log.2017-12-01:15
|
||||
dspace.log.2017-12-02:20
|
||||
dspace.log.2017-12-03:38
|
||||
dspace.log.2017-12-04:65
|
||||
dspace.log.2017-12-05:43
|
||||
dspace.log.2017-12-06:72
|
||||
dspace.log.2017-12-07:27
|
||||
dspace.log.2017-12-08:15
|
||||
dspace.log.2017-12-09:29
|
||||
dspace.log.2017-12-10:35
|
||||
dspace.log.2017-12-11:20
|
||||
dspace.log.2017-12-12:44
|
||||
dspace.log.2017-12-13:36
|
||||
dspace.log.2017-12-14:59
|
||||
dspace.log.2017-12-15:104
|
||||
dspace.log.2017-12-16:53
|
||||
dspace.log.2017-12-17:66
|
||||
dspace.log.2017-12-18:83
|
||||
dspace.log.2017-12-19:101
|
||||
dspace.log.2017-12-20:74
|
||||
dspace.log.2017-12-21:55
|
||||
dspace.log.2017-12-22:66
|
||||
dspace.log.2017-12-23:50
|
||||
dspace.log.2017-12-24:85
|
||||
dspace.log.2017-12-25:62
|
||||
dspace.log.2017-12-26:49
|
||||
dspace.log.2017-12-27:30
|
||||
dspace.log.2017-12-28:54
|
||||
dspace.log.2017-12-29:68
|
||||
dspace.log.2017-12-30:89
|
||||
dspace.log.2017-12-31:53
|
||||
dspace.log.2018-01-01:45
|
||||
dspace.log.2018-01-02:34
|
||||
</code></pre>
|
||||
|
||||
<ul>
|
||||
<li>Danny wrote to ask for help renewing the wildcard ilri.org certificate and I advised that we should probably use Let’s Encrypt if it’s just a handful of domains</li>
|
||||
</ul>
|
||||
|
||||
<p></p>
|
||||
<a href='https://alanorth.github.io/cgspace-notes/2018-01/'>Read more →</a>
|
||||
</article>
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
<article class="blog-post">
|
||||
<header>
|
||||
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2017-12/">December, 2017</a></h2>
|
||||
|
|
@ -349,41 +445,6 @@ COPY 54701
|
|||
|
||||
|
||||
|
||||
|
||||
<article class="blog-post">
|
||||
<header>
|
||||
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2017-04/">April, 2017</a></h2>
|
||||
<p class="blog-post-meta"><time datetime="2017-04-02T17:08:52+02:00">Sun Apr 02, 2017</time> by Alan Orth in
|
||||
|
||||
<i class="fa fa-tag" aria-hidden="true"></i> <a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
|
||||
|
||||
</p>
|
||||
</header>
|
||||
<h2 id="2017-04-02">2017-04-02</h2>
|
||||
|
||||
<ul>
|
||||
<li>Merge one change to CCAFS flagships that I had forgotten to remove last month (“MANAGING CLIMATE RISK”): <a href="https://github.com/ilri/DSpace/pull/317">https://github.com/ilri/DSpace/pull/317</a></li>
|
||||
<li>Quick proof-of-concept hack to add <code>dc.rights</code> to the input form, including some inline instructions/hints:</li>
|
||||
</ul>
|
||||
|
||||
<p><img src="/cgspace-notes/2017/04/dc-rights.png" alt="dc.rights in the submission form" /></p>
|
||||
|
||||
<ul>
|
||||
<li>Remove redundant/duplicate text in the DSpace submission license</li>
|
||||
<li>Testing the CMYK patch on a collection with 650 items:</li>
|
||||
</ul>
|
||||
|
||||
<pre><code>$ [dspace]/bin/dspace filter-media -f -i 10568/16498 -p "ImageMagick PDF Thumbnail" -v >& /tmp/filter-media-cmyk.txt
|
||||
</code></pre>
|
||||
|
||||
<p></p>
|
||||
<a href='https://alanorth.github.io/cgspace-notes/2017-04/'>Read more →</a>
|
||||
</article>
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
<nav class="blog-pagination">
|
||||
|
||||
<a class="btn btn-outline-primary" href="/cgspace-notes/tags/" rel="prev" role="button">Previous page</a>
|
||||
|
|
@ -408,6 +469,8 @@ COPY 54701
|
|||
<ol class="list-unstyled">
|
||||
|
||||
|
||||
<li><a href="/cgspace-notes/2018-11/">November, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-10/">October, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-09/">September, 2018</a></li>
|
||||
|
|
@ -416,8 +479,6 @@ COPY 54701
|
|||
|
||||
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
|
||||
|
||||
</ol>
|
||||
</section>
|
||||
|
||||
|
|
|
|||
|
|
@ -9,7 +9,7 @@
|
|||
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
|
||||
<meta property="og:type" content="website" />
|
||||
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/tags/" />
|
||||
<meta property="og:updated_time" content="2017-03-01T17:08:52+02:00"/>
|
||||
<meta property="og:updated_time" content="2017-04-02T17:08:52+02:00"/>
|
||||
|
||||
<meta name="twitter:card" content="summary"/>
|
||||
<meta name="twitter:title" content="Tags"/>
|
||||
|
|
@ -28,7 +28,7 @@
|
|||
"@type": "Person",
|
||||
"name": "Alan Orth"
|
||||
},
|
||||
"dateModified": "2017-03-01T17:08:52+02:00",
|
||||
"dateModified": "2017-04-02T17:08:52+02:00",
|
||||
"keywords": "notes,notes,",
|
||||
"description": "Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
|
||||
}
|
||||
|
|
@ -89,6 +89,41 @@
|
|||
|
||||
|
||||
|
||||
<article class="blog-post">
|
||||
<header>
|
||||
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2017-04/">April, 2017</a></h2>
|
||||
<p class="blog-post-meta"><time datetime="2017-04-02T17:08:52+02:00">Sun Apr 02, 2017</time> by Alan Orth in
|
||||
|
||||
<i class="fa fa-tag" aria-hidden="true"></i> <a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
|
||||
|
||||
</p>
|
||||
</header>
|
||||
<h2 id="2017-04-02">2017-04-02</h2>
|
||||
|
||||
<ul>
|
||||
<li>Merge one change to CCAFS flagships that I had forgotten to remove last month (“MANAGING CLIMATE RISK”): <a href="https://github.com/ilri/DSpace/pull/317">https://github.com/ilri/DSpace/pull/317</a></li>
|
||||
<li>Quick proof-of-concept hack to add <code>dc.rights</code> to the input form, including some inline instructions/hints:</li>
|
||||
</ul>
|
||||
|
||||
<p><img src="/cgspace-notes/2017/04/dc-rights.png" alt="dc.rights in the submission form" /></p>
|
||||
|
||||
<ul>
|
||||
<li>Remove redundant/duplicate text in the DSpace submission license</li>
|
||||
<li>Testing the CMYK patch on a collection with 650 items:</li>
|
||||
</ul>
|
||||
|
||||
<pre><code>$ [dspace]/bin/dspace filter-media -f -i 10568/16498 -p "ImageMagick PDF Thumbnail" -v >& /tmp/filter-media-cmyk.txt
|
||||
</code></pre>
|
||||
|
||||
<p></p>
|
||||
<a href='https://alanorth.github.io/cgspace-notes/2017-04/'>Read more →</a>
|
||||
</article>
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
<article class="blog-post">
|
||||
<header>
|
||||
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2017-03/">March, 2017</a></h2>
|
||||
|
|
@ -395,35 +430,6 @@ dspacetest=# select text_value from metadatavalue where metadata_field_id=3 and
|
|||
|
||||
|
||||
|
||||
|
||||
<article class="blog-post">
|
||||
<header>
|
||||
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-06/">June, 2016</a></h2>
|
||||
<p class="blog-post-meta"><time datetime="2016-06-01T10:53:00+03:00">Wed Jun 01, 2016</time> by Alan Orth in
|
||||
|
||||
<i class="fa fa-tag" aria-hidden="true"></i> <a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
|
||||
|
||||
</p>
|
||||
</header>
|
||||
<h2 id="2016-06-01">2016-06-01</h2>
|
||||
|
||||
<ul>
|
||||
<li>Experimenting with IFPRI OAI (we want to harvest their publications)</li>
|
||||
<li>After reading the <a href="https://www.oclc.org/support/services/contentdm/help/server-admin-help/oai-support.en.html">ContentDM documentation</a> I found IFPRI’s OAI endpoint: <a href="http://ebrary.ifpri.org/oai/oai.php">http://ebrary.ifpri.org/oai/oai.php</a></li>
|
||||
<li>After reading the <a href="https://www.openarchives.org/OAI/openarchivesprotocol.html">OAI documentation</a> and testing with an <a href="http://validator.oaipmh.com/">OAI validator</a> I found out how to get their publications</li>
|
||||
<li>This is their publications set: <a href="http://ebrary.ifpri.org/oai/oai.php?verb=ListRecords&from=2016-01-01&set=p15738coll2&metadataPrefix=oai_dc">http://ebrary.ifpri.org/oai/oai.php?verb=ListRecords&from=2016-01-01&set=p15738coll2&metadataPrefix=oai_dc</a></li>
|
||||
<li>You can see the others by using the OAI <code>ListSets</code> verb: <a href="http://ebrary.ifpri.org/oai/oai.php?verb=ListSets">http://ebrary.ifpri.org/oai/oai.php?verb=ListSets</a></li>
|
||||
<li>Working on second phase of metadata migration, looks like this will work for moving CPWF-specific data in <code>dc.identifier.fund</code> to <code>cg.identifier.cpwfproject</code> and then the rest to <code>dc.description.sponsorship</code></li>
|
||||
</ul>
|
||||
|
||||
<p></p>
|
||||
<a href='https://alanorth.github.io/cgspace-notes/2016-06/'>Read more →</a>
|
||||
</article>
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
<nav class="blog-pagination">
|
||||
|
||||
<a class="btn btn-outline-primary" href="/cgspace-notes/tags/page/2/" rel="prev" role="button">Previous page</a>
|
||||
|
|
@ -448,6 +454,8 @@ dspacetest=# select text_value from metadatavalue where metadata_field_id=3 and
|
|||
<ol class="list-unstyled">
|
||||
|
||||
|
||||
<li><a href="/cgspace-notes/2018-11/">November, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-10/">October, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-09/">September, 2018</a></li>
|
||||
|
|
@ -456,8 +464,6 @@ dspacetest=# select text_value from metadatavalue where metadata_field_id=3 and
|
|||
|
||||
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
|
||||
|
||||
</ol>
|
||||
</section>
|
||||
|
||||
|
|
|
|||
|
|
@ -9,7 +9,7 @@
|
|||
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
|
||||
<meta property="og:type" content="website" />
|
||||
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/tags/" />
|
||||
<meta property="og:updated_time" content="2016-05-01T23:06:00+03:00"/>
|
||||
<meta property="og:updated_time" content="2016-06-01T10:53:00+03:00"/>
|
||||
|
||||
<meta name="twitter:card" content="summary"/>
|
||||
<meta name="twitter:title" content="Tags"/>
|
||||
|
|
@ -28,7 +28,7 @@
|
|||
"@type": "Person",
|
||||
"name": "Alan Orth"
|
||||
},
|
||||
"dateModified": "2016-05-01T23:06:00+03:00",
|
||||
"dateModified": "2016-06-01T10:53:00+03:00",
|
||||
"keywords": "notes,notes,",
|
||||
"description": "Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
|
||||
}
|
||||
|
|
@ -89,6 +89,35 @@
|
|||
|
||||
|
||||
|
||||
<article class="blog-post">
|
||||
<header>
|
||||
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-06/">June, 2016</a></h2>
|
||||
<p class="blog-post-meta"><time datetime="2016-06-01T10:53:00+03:00">Wed Jun 01, 2016</time> by Alan Orth in
|
||||
|
||||
<i class="fa fa-tag" aria-hidden="true"></i> <a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
|
||||
|
||||
</p>
|
||||
</header>
|
||||
<h2 id="2016-06-01">2016-06-01</h2>
|
||||
|
||||
<ul>
|
||||
<li>Experimenting with IFPRI OAI (we want to harvest their publications)</li>
|
||||
<li>After reading the <a href="https://www.oclc.org/support/services/contentdm/help/server-admin-help/oai-support.en.html">ContentDM documentation</a> I found IFPRI’s OAI endpoint: <a href="http://ebrary.ifpri.org/oai/oai.php">http://ebrary.ifpri.org/oai/oai.php</a></li>
|
||||
<li>After reading the <a href="https://www.openarchives.org/OAI/openarchivesprotocol.html">OAI documentation</a> and testing with an <a href="http://validator.oaipmh.com/">OAI validator</a> I found out how to get their publications</li>
|
||||
<li>This is their publications set: <a href="http://ebrary.ifpri.org/oai/oai.php?verb=ListRecords&from=2016-01-01&set=p15738coll2&metadataPrefix=oai_dc">http://ebrary.ifpri.org/oai/oai.php?verb=ListRecords&from=2016-01-01&set=p15738coll2&metadataPrefix=oai_dc</a></li>
|
||||
<li>You can see the others by using the OAI <code>ListSets</code> verb: <a href="http://ebrary.ifpri.org/oai/oai.php?verb=ListSets">http://ebrary.ifpri.org/oai/oai.php?verb=ListSets</a></li>
|
||||
<li>Working on second phase of metadata migration, looks like this will work for moving CPWF-specific data in <code>dc.identifier.fund</code> to <code>cg.identifier.cpwfproject</code> and then the rest to <code>dc.description.sponsorship</code></li>
|
||||
</ul>
|
||||
|
||||
<p></p>
|
||||
<a href='https://alanorth.github.io/cgspace-notes/2016-06/'>Read more →</a>
|
||||
</article>
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
<article class="blog-post">
|
||||
<header>
|
||||
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-05/">May, 2016</a></h2>
|
||||
|
|
@ -296,7 +325,7 @@
|
|||
<article class="blog-post">
|
||||
<header>
|
||||
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/posts/">Posts</a></h2>
|
||||
<p class="blog-post-meta"><time datetime="2018-10-01T22:31:54+03:00">Mon Oct 01, 2018</time> by Alan Orth</p>
|
||||
<p class="blog-post-meta"><time datetime="2018-11-01T16:41:30+02:00">Thu Nov 01, 2018</time> by Alan Orth</p>
|
||||
</header>
|
||||
|
||||
<a href='https://alanorth.github.io/cgspace-notes/posts/'>Read more →</a>
|
||||
|
|
@ -330,6 +359,8 @@
|
|||
<ol class="list-unstyled">
|
||||
|
||||
|
||||
<li><a href="/cgspace-notes/2018-11/">November, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-10/">October, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-09/">September, 2018</a></li>
|
||||
|
|
@ -338,8 +369,6 @@
|
|||
|
||||
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
|
||||
|
||||
</ol>
|
||||
</section>
|
||||
|
||||
|
|
|
|||
Loading…
Reference in New Issue