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Add notes for 2019-09-27
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@ -358,12 +358,5 @@ sys 2m27.496s
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- After reading the code I see that XSLT is reading the community titles from the DIM representation (stored in the `$dim` variable) created from METS
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- I modified the patterns in my sed script so that those lines are not replaced and then the community list works again
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- This is actually not a problem at all because this metadata is only used in the HTML meta tags in XMLUI community lists and has nothing to do with item metadata
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- Get a list of institutions from CCAFS's Clarisa API and try to parse it with `jq` and pass it through `csvcut` to add line numbers:
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```
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$ cat ~/Downloads/institutions.json| jq '.[] | {name: .name}' | grep name | awk -F: '{print $2}' | sed 's/"//g' | csvcut -l > /tmp/investors.csv
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```
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- I could potentially use this with reconcile-csv and OpenRefine as a source to validate our institutional authors against...
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<!-- vim: set sw=2 ts=2: -->
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@ -319,5 +319,37 @@ $ dspace import -a me@cgiar.org -m 2019-09-20-bioversity2.map -s /home/aorth/Bio
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- Give more feedback to Bosede about the [IITA Sept 6 (20196th.xls) records on DSpace Test](https://dspacetest.cgiar.org/handle/10568/105116)
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- I told her to delete one item that appears to be a duplicate, or to fix its citation to be correct if she thinks it is not a duplicate
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- I deleted another item that I had previously identified as a duplicate that she had fixed by incorrectly deleting the original (ugh)
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- Get a list of institutions from CCAFS's Clarisa API and try to parse it with `jq`, do some small cleanups and add a header in `sed`, and then pass it through `csvcut` to add line numbers:
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```
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$ cat ~/Downloads/institutions.json| jq '.[] | {name: .name}' | grep name | awk -F: '{print $2}' | sed -e 's/"//g' -e 's/^ //' -e '1iname' | csvcut -l | sed '1s/line_number/id/' > /tmp/clarisa-institutions.csv
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$ csv-metadata-quality -i /tmp/clarisa-institutions.csv -o /tmp/clarisa-institutions-cleaned.csv -u
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```
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- The csv-metadata-quality tool caught a few records with excessive spacing and unnecessary Unicode
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- I could potentially use this with reconcile-csv and OpenRefine as a source to validate our institutional authors against...
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## 2019-09-27
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- Skype with Peter and Abenet about CGSpace actions
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- Peter will respond to ICARDA's request to deposit items in to CGSpace, with a caveat that we agree on some vocabulary standards for institutions, countries, regions, etc
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- We discussed using ISO 3166 for countries, though Peter doesn't like the formal names like "Moldova, Republic of" and "Tanzania, United Republic of"
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- The Debian `iso-codes` package has ISO 3166-1 with "common name", "name", and "official name" representations, for example:
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- common_name: Tanzania
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- name: Tanzania, United Republic of
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- official_name: United Republic of Tanzania
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- There are still some unfortunate ones there, though:
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- name: Korea, Democratic People's Republic of
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- official_name: Democratic People's Republic of Korea
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- And this, which isn't even in English...
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- name: Côte d'Ivoire
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- official_name: Republic of Côte d'Ivoire
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- The other alternative is to just keep using the names we have, which are mostly compliant with AGROVOC
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- Peter said that a new server for DSpace Test is fine, so I can proceed with the normal process of getting approval from Michael Victor and ICT when I have time (recommend moving from $40 to $80/month Linode, with 16GB RAM)
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- I need to ask Atmire for a quote to upgrade CGSpace to DSpace 6 with all current modules so we can see how many more credits we need
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- A little bit more work on the Sept 6 IITA batch records
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- Bosede deleted the one item that I told her was a duplicate
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- I checked the AGROVOC subjects and fixed one incorrect one
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- Then I told her that I think the items are ready to go to CGSpace and asked Abenet for a final comment
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<!-- vim: set sw=2 ts=2: -->
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@ -27,7 +27,7 @@ Run system updates on DSpace Test (linode19) and reboot it
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<meta property="og:type" content="article" />
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<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/2019-08/" />
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<meta property="article:published_time" content="2019-08-03T12:39:51+03:00" />
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<meta property="article:modified_time" content="2019-09-01T01:54:55+03:00" />
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<meta property="article:modified_time" content="2019-09-27T01:20:09+03:00" />
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<meta name="twitter:card" content="summary"/>
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<meta name="twitter:title" content="August, 2019"/>
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@ -59,9 +59,9 @@ Run system updates on DSpace Test (linode19) and reboot it
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"@type": "BlogPosting",
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"headline": "August, 2019",
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"url": "https:\/\/alanorth.github.io\/cgspace-notes\/2019-08\/",
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"wordCount": "2770",
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"wordCount": "2703",
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"datePublished": "2019-08-03T12:39:51\x2b03:00",
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"dateModified": "2019-09-01T01:54:55\x2b03:00",
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"dateModified": "2019-09-27T01:20:09\x2b03:00",
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"author": {
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"@type": "Person",
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"name": "Alan Orth"
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@ -603,13 +603,6 @@ sys 2m27.496s
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<li>I modified the patterns in my sed script so that those lines are not replaced and then the community list works again</li>
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<li>This is actually not a problem at all because this metadata is only used in the HTML meta tags in XMLUI community lists and has nothing to do with item metadata</li>
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</ul></li>
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<li><p>Get a list of institutions from CCAFS’s Clarisa API and try to parse it with <code>jq</code> and pass it through <code>csvcut</code> to add line numbers:</p>
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<pre><code>$ cat ~/Downloads/institutions.json| jq '.[] | {name: .name}' | grep name | awk -F: '{print $2}' | sed 's/"//g' | csvcut -l > /tmp/investors.csv
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</code></pre></li>
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<li><p>I could potentially use this with reconcile-csv and OpenRefine as a source to validate our institutional authors against…</p></li>
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</ul>
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<!-- vim: set sw=2 ts=2: -->
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@ -40,7 +40,7 @@ Here are the top ten IPs in the nginx XMLUI and REST/OAI logs this morning:
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<meta property="og:type" content="article" />
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<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/2019-09/" />
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<meta property="article:published_time" content="2019-09-01T10:17:51+03:00" />
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<meta property="article:modified_time" content="2019-09-26T14:21:41+03:00" />
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<meta property="article:modified_time" content="2019-09-27T01:20:09+03:00" />
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<meta name="twitter:card" content="summary"/>
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<meta name="twitter:title" content="September, 2019"/>
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@ -85,9 +85,9 @@ Here are the top ten IPs in the nginx XMLUI and REST/OAI logs this morning:
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"@type": "BlogPosting",
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"headline": "September, 2019",
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"url": "https:\/\/alanorth.github.io\/cgspace-notes\/2019-09\/",
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"wordCount": "2497",
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"wordCount": "2870",
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"datePublished": "2019-09-01T10:17:51\x2b03:00",
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"dateModified": "2019-09-26T14:21:41\x2b03:00",
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"dateModified": "2019-09-27T01:20:09\x2b03:00",
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"author": {
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"@type": "Person",
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"name": "Alan Orth"
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@ -561,6 +561,56 @@ $ dspace import -a me@cgiar.org -m 2019-09-20-bioversity2.map -s /home/aorth/Bio
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<li>I told her to delete one item that appears to be a duplicate, or to fix its citation to be correct if she thinks it is not a duplicate</li>
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<li>I deleted another item that I had previously identified as a duplicate that she had fixed by incorrectly deleting the original (ugh)</li>
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</ul></li>
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<li><p>Get a list of institutions from CCAFS’s Clarisa API and try to parse it with <code>jq</code>, do some small cleanups and add a header in <code>sed</code>, and then pass it through <code>csvcut</code> to add line numbers:</p>
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<pre><code>$ cat ~/Downloads/institutions.json| jq '.[] | {name: .name}' | grep name | awk -F: '{print $2}' | sed -e 's/"//g' -e 's/^ //' -e '1iname' | csvcut -l | sed '1s/line_number/id/' > /tmp/clarisa-institutions.csv
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$ csv-metadata-quality -i /tmp/clarisa-institutions.csv -o /tmp/clarisa-institutions-cleaned.csv -u
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</code></pre></li>
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<li><p>The csv-metadata-quality tool caught a few records with excessive spacing and unnecessary Unicode</p></li>
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<li><p>I could potentially use this with reconcile-csv and OpenRefine as a source to validate our institutional authors against…</p></li>
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</ul>
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<h2 id="2019-09-27">2019-09-27</h2>
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<ul>
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<li>Skype with Peter and Abenet about CGSpace actions
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<ul>
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<li>Peter will respond to ICARDA’s request to deposit items in to CGSpace, with a caveat that we agree on some vocabulary standards for institutions, countries, regions, etc</li>
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<li>We discussed using ISO 3166 for countries, though Peter doesn’t like the formal names like “Moldova, Republic of” and “Tanzania, United Republic of”</li>
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<li>The Debian <code>iso-codes</code> package has ISO 3166-1 with “common name”, “name”, and “official name” representations, for example:
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<ul>
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<li>common_name: Tanzania</li>
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<li>name: Tanzania, United Republic of</li>
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<li>official_name: United Republic of Tanzania</li>
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</ul></li>
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<li>There are still some unfortunate ones there, though:
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<ul>
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<li>name: Korea, Democratic People’s Republic of</li>
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<li>official_name: Democratic People’s Republic of Korea</li>
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</ul></li>
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<li>And this, which isn’t even in English…
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<ul>
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<li>name: Côte d’Ivoire</li>
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<li>official_name: Republic of Côte d’Ivoire</li>
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</ul></li>
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<li>The other alternative is to just keep using the names we have, which are mostly compliant with AGROVOC</li>
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<li>Peter said that a new server for DSpace Test is fine, so I can proceed with the normal process of getting approval from Michael Victor and ICT when I have time (recommend moving from $40 to $80/month Linode, with 16GB RAM)</li>
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<li>I need to ask Atmire for a quote to upgrade CGSpace to DSpace 6 with all current modules so we can see how many more credits we need</li>
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</ul></li>
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<li>A little bit more work on the Sept 6 IITA batch records
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<ul>
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<li>Bosede deleted the one item that I told her was a duplicate</li>
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<li>I checked the AGROVOC subjects and fixed one incorrect one</li>
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<li>Then I told her that I think the items are ready to go to CGSpace and asked Abenet for a final comment</li>
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</ul></li>
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</ul>
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<!-- vim: set sw=2 ts=2: -->
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@ -4,32 +4,32 @@
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<url>
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<loc>https://alanorth.github.io/cgspace-notes/</loc>
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<lastmod>2019-09-26T14:21:41+03:00</lastmod>
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<lastmod>2019-09-27T01:20:09+03:00</lastmod>
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</url>
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<url>
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<loc>https://alanorth.github.io/cgspace-notes/tags/notes/</loc>
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<lastmod>2019-09-26T14:21:41+03:00</lastmod>
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<lastmod>2019-09-27T01:20:09+03:00</lastmod>
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</url>
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<url>
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<loc>https://alanorth.github.io/cgspace-notes/posts/</loc>
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<lastmod>2019-09-26T14:21:41+03:00</lastmod>
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<lastmod>2019-09-27T01:20:09+03:00</lastmod>
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</url>
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<url>
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<loc>https://alanorth.github.io/cgspace-notes/2019-09/</loc>
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<lastmod>2019-09-26T14:21:41+03:00</lastmod>
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<lastmod>2019-09-27T01:20:09+03:00</lastmod>
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</url>
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<url>
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<loc>https://alanorth.github.io/cgspace-notes/tags/</loc>
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<lastmod>2019-09-26T14:21:41+03:00</lastmod>
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<lastmod>2019-09-27T01:20:09+03:00</lastmod>
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</url>
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<url>
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<loc>https://alanorth.github.io/cgspace-notes/2019-08/</loc>
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<lastmod>2019-09-01T01:54:55+03:00</lastmod>
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<lastmod>2019-09-27T01:20:09+03:00</lastmod>
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</url>
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<url>
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