alanorth
/
cgspace-notes
mirror of https://github.com/alanorth/cgspace-notes.git
1
0
Fork 0
Code Issues Projects Releases Wiki Activity

Add notes for 2018-12-02

This commit is contained in:
Alan Orth 2018-12-02 10:47:41 +02:00
parent a86b197fa4
commit a0f1b2910e
Signed by: alanorth
GPG Key ID: 0FB860CC9C45B1B9
68 changed files with 1124 additions and 627 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

45
content/posts/2018-12.md Normal file
View File

@ -0,0 +1,45 @@
---
title: "December, 2018"
date: 2018-12-02T02:09:30+02:00
author: "Alan Orth"
tags: ["Notes"]
---
## 2018-12-01
- Switch CGSpace (linode18) to use OpenJDK instead of Oracle JDK
- I manually installed OpenJDK, then removed Oracle JDK, then re-ran the [Ansible playbook](http://github.com/ilri/rmg-ansible-public) to update all configuration files, etc
- Then I ran all system updates and restarted the server
## 2018-12-02
- I noticed that there is another issue with PDF thumbnails on CGSpace, and I see there was another [Ghostscript vulnerability last week](https://usn.ubuntu.com/3831-1/)
<!--more-->
- The error when I try to manually run the media filter for one item from the command line:
```
org.im4java.core.InfoException: org.im4java.core.CommandException: org.im4java.core.CommandException: identify: FailedToExecuteCommand `"gs" -q -dQUIET -dSAFER -dBATCH -dNOPAUSE -dNOPROMPT -dMaxBitmap=500000000 -dAlignToPixels=0 -dGridFitTT=2 "-sDEVICE=pngalpha" -dTextAlphaBits=4 -dGraphicsAlphaBits=4 "-r72x72" -dFirstPage=1 -dLastPage=1 "-sOutputFile=/tmp/magick-12989PcFN0DnJOej7%d" "-f/tmp/magick-129895Bmp44lvUfxo" "-f/tmp/magick-12989C0QFG51fktLF"' (-1) @ error/delegate.c/ExternalDelegateCommand/461.
org.im4java.core.InfoException: org.im4java.core.CommandException: org.im4java.core.CommandException: identify: FailedToExecuteCommand `"gs" -q -dQUIET -dSAFER -dBATCH -dNOPAUSE -dNOPROMPT -dMaxBitmap=500000000 -dAlignToPixels=0 -dGridFitTT=2 "-sDEVICE=pngalpha" -dTextAlphaBits=4 -dGraphicsAlphaBits=4 "-r72x72" -dFirstPage=1 -dLastPage=1 "-sOutputFile=/tmp/magick-12989PcFN0DnJOej7%d" "-f/tmp/magick-129895Bmp44lvUfxo" "-f/tmp/magick-12989C0QFG51fktLF"' (-1) @ error/delegate.c/ExternalDelegateCommand/461.
at org.im4java.core.Info.getBaseInfo(Info.java:360)
at org.im4java.core.Info.<init>(Info.java:151)
at org.dspace.app.mediafilter.ImageMagickThumbnailFilter.getImageFile(ImageMagickThumbnailFilter.java:142)
at org.dspace.app.mediafilter.ImageMagickPdfThumbnailFilter.getDestinationStream(ImageMagickPdfThumbnailFilter.java:24)
at org.dspace.app.mediafilter.FormatFilter.processBitstream(FormatFilter.java:170)
at org.dspace.app.mediafilter.MediaFilterManager.filterBitstream(MediaFilterManager.java:475)
at org.dspace.app.mediafilter.MediaFilterManager.filterItem(MediaFilterManager.java:429)
at org.dspace.app.mediafilter.MediaFilterManager.applyFiltersItem(MediaFilterManager.java:401)
at org.dspace.app.mediafilter.MediaFilterManager.main(MediaFilterManager.java:237)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.dspace.app.launcher.ScriptLauncher.runOneCommand(ScriptLauncher.java:226)
at org.dspace.app.launcher.ScriptLauncher.main(ScriptLauncher.java:78)
```
- A comment on [StackOverflow question](https://stackoverflow.com/questions/53560755/ghostscript-9-26-update-breaks-imagick-readimage-for-multipage-pdf) from yesterday suggests it might be a bug with the `pngalpha` device in Ghostscript and [links to an upstream bug](https://bugs.ghostscript.com/show_bug.cgi?id=699815)
- I think we need to wait for a fix from Ubuntu
<!-- vim: set sw=2 ts=2: -->

6
docs/2015-11/index.html
View File

@ -34,7 +34,7 @@ Last week I had increased the limit from 30 to 60, which seemed to help, but now
$ psql -c &#39;SELECT * from pg_stat_activity;&#39; | grep idle | grep -c cgspace
78
"/>
<meta name="generator" content="Hugo 0.51" />
<meta name="generator" content="Hugo 0.52" />
@ -276,6 +276,8 @@ db.statementpool = true
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2018-12/">December, 2018</a></li>
<li><a href="/cgspace-notes/2018-11/">November, 2018</a></li>
<li><a href="/cgspace-notes/2018-10/">October, 2018</a></li>
@ -284,8 +286,6 @@ db.statementpool = true
<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
</ol>
</section>

6
docs/2015-12/index.html
View File

@ -36,7 +36,7 @@ Replace lzop with xz in log compression cron jobs on DSpace Test—it uses less
-rw-rw-r-- 1 tomcat7 tomcat7 387K Nov 18 23:59 dspace.log.2015-11-18.lzo
-rw-rw-r-- 1 tomcat7 tomcat7 169K Nov 18 23:59 dspace.log.2015-11-18.xz
"/>
<meta name="generator" content="Hugo 0.51" />
<meta name="generator" content="Hugo 0.52" />
@ -293,6 +293,8 @@ $ curl -o /dev/null -s -w %{time_total}\\n https://cgspace.cgiar.org/rest/handle
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2018-12/">December, 2018</a></li>
<li><a href="/cgspace-notes/2018-11/">November, 2018</a></li>
<li><a href="/cgspace-notes/2018-10/">October, 2018</a></li>
@ -301,8 +303,6 @@ $ curl -o /dev/null -s -w %{time_total}\\n https://cgspace.cgiar.org/rest/handle
<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
</ol>
</section>

6
docs/2016-01/index.html
View File

@ -26,7 +26,7 @@ Move ILRI collection 10568/12503 from 10568/27869 to 10568/27629 using the move_
I realized it is only necessary to clear the Cocoon cache after moving collections—rather than reindexing—as no metadata has changed, and therefore no search or browse indexes need to be updated.
Update GitHub wiki for documentation of maintenance tasks.
"/>
<meta name="generator" content="Hugo 0.51" />
<meta name="generator" content="Hugo 0.52" />
@ -208,6 +208,8 @@ $ find SimpleArchiveForBio/ -iname &ldquo;*.pdf&rdquo; -exec basename {} \; | so
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2018-12/">December, 2018</a></li>
<li><a href="/cgspace-notes/2018-11/">November, 2018</a></li>
<li><a href="/cgspace-notes/2018-10/">October, 2018</a></li>
@ -216,8 +218,6 @@ $ find SimpleArchiveForBio/ -iname &ldquo;*.pdf&rdquo; -exec basename {} \; | so
<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
</ol>
</section>

6
docs/2016-02/index.html
View File

@ -40,7 +40,7 @@ I noticed we have a very interesting list of countries on CGSpace:
Not only are there 49,000 countries, we have some blanks (25)&hellip;
Also, lots of things like &ldquo;COTE D`LVOIRE&rdquo; and &ldquo;COTE D IVOIRE&rdquo;
"/>
<meta name="generator" content="Hugo 0.51" />
<meta name="generator" content="Hugo 0.52" />
@ -461,6 +461,8 @@ Bitstream: tést señora alimentación.pdf
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2018-12/">December, 2018</a></li>
<li><a href="/cgspace-notes/2018-11/">November, 2018</a></li>
<li><a href="/cgspace-notes/2018-10/">October, 2018</a></li>
@ -469,8 +471,6 @@ Bitstream: tést señora alimentación.pdf
<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
</ol>
</section>

6
docs/2016-03/index.html
View File

@ -26,7 +26,7 @@ Looking at issues with author authorities on CGSpace
For some reason we still have the index-lucene-update cron job active on CGSpace, but I&rsquo;m pretty sure we don&rsquo;t need it as of the latest few versions of Atmire&rsquo;s Listings and Reports module
Reinstall my local (Mac OS X) DSpace stack with Tomcat 7, PostgreSQL 9.3, and Java JDK 1.7 to match environment on CGSpace server
"/>
<meta name="generator" content="Hugo 0.51" />
<meta name="generator" content="Hugo 0.52" />
@ -361,6 +361,8 @@ Reinstall my local (Mac OS X) DSpace stack with Tomcat 7, PostgreSQL 9.3, and Ja
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2018-12/">December, 2018</a></li>
<li><a href="/cgspace-notes/2018-11/">November, 2018</a></li>
<li><a href="/cgspace-notes/2018-10/">October, 2018</a></li>
@ -369,8 +371,6 @@ Reinstall my local (Mac OS X) DSpace stack with Tomcat 7, PostgreSQL 9.3, and Ja
<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
</ol>
</section>

6
docs/2016-04/index.html
View File

@ -30,7 +30,7 @@ After running DSpace for over five years I&rsquo;ve never needed to look in any
This will save us a few gigs of backup space we&rsquo;re paying for on S3
Also, I noticed the checker log has some errors we should pay attention to:
"/>
<meta name="generator" content="Hugo 0.51" />
<meta name="generator" content="Hugo 0.52" />
@ -578,6 +578,8 @@ dspace.log.2016-04-27:7271
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2018-12/">December, 2018</a></li>
<li><a href="/cgspace-notes/2018-11/">November, 2018</a></li>
<li><a href="/cgspace-notes/2018-10/">October, 2018</a></li>
@ -586,8 +588,6 @@ dspace.log.2016-04-27:7271
<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
</ol>
</section>

6
docs/2016-05/index.html
View File

@ -34,7 +34,7 @@ There are 3,000 IPs accessing the REST API in a 24-hour period!
# awk &#39;{print $1}&#39; /var/log/nginx/rest.log | uniq | wc -l
3168
"/>
<meta name="generator" content="Hugo 0.51" />
<meta name="generator" content="Hugo 0.52" />
@ -428,6 +428,8 @@ sys 0m20.540s
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2018-12/">December, 2018</a></li>
<li><a href="/cgspace-notes/2018-11/">November, 2018</a></li>
<li><a href="/cgspace-notes/2018-10/">October, 2018</a></li>
@ -436,8 +438,6 @@ sys 0m20.540s
<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
</ol>
</section>

6
docs/2016-06/index.html
View File

@ -32,7 +32,7 @@ This is their publications set: http://ebrary.ifpri.org/oai/oai.php?verb=ListRec
You can see the others by using the OAI ListSets verb: http://ebrary.ifpri.org/oai/oai.php?verb=ListSets
Working on second phase of metadata migration, looks like this will work for moving CPWF-specific data in dc.identifier.fund to cg.identifier.cpwfproject and then the rest to dc.description.sponsorship
"/>
<meta name="generator" content="Hugo 0.51" />
<meta name="generator" content="Hugo 0.52" />
@ -473,6 +473,8 @@ $ ./delete-metadata-values.py -f dc.contributor.corporate -i Corporate-Authors-D
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2018-12/">December, 2018</a></li>
<li><a href="/cgspace-notes/2018-11/">November, 2018</a></li>
<li><a href="/cgspace-notes/2018-10/">October, 2018</a></li>
@ -481,8 +483,6 @@ $ ./delete-metadata-values.py -f dc.contributor.corporate -i Corporate-Authors-D
<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
</ol>
</section>

6
docs/2016-07/index.html
View File

@ -48,7 +48,7 @@ dspacetest=# select text_value from metadatavalue where metadata_field_id=3 and
In this case the select query was showing 95 results before the update
"/>
<meta name="generator" content="Hugo 0.51" />
<meta name="generator" content="Hugo 0.52" />
@ -391,6 +391,8 @@ discovery.index.authority.ignore-variants=true
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2018-12/">December, 2018</a></li>
<li><a href="/cgspace-notes/2018-11/">November, 2018</a></li>
<li><a href="/cgspace-notes/2018-10/">October, 2018</a></li>
@ -399,8 +401,6 @@ discovery.index.authority.ignore-variants=true
<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
</ol>
</section>

6
docs/2016-08/index.html
View File

@ -42,7 +42,7 @@ $ git checkout -b 55new 5_x-prod
$ git reset --hard ilri/5_x-prod
$ git rebase -i dspace-5.5
"/>
<meta name="generator" content="Hugo 0.51" />
<meta name="generator" content="Hugo 0.52" />
@ -464,6 +464,8 @@ $ JAVA_OPTS=&quot;-Dfile.encoding=UTF-8 -Xmx512m&quot; /home/cgspace.cgiar.org/b
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2018-12/">December, 2018</a></li>
<li><a href="/cgspace-notes/2018-11/">November, 2018</a></li>
<li><a href="/cgspace-notes/2018-10/">October, 2018</a></li>
@ -472,8 +474,6 @@ $ JAVA_OPTS=&quot;-Dfile.encoding=UTF-8 -Xmx512m&quot; /home/cgspace.cgiar.org/b
<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
</ol>
</section>

6
docs/2016-09/index.html
View File

@ -34,7 +34,7 @@ It looks like we might be able to use OUs now, instead of DCs:
$ ldapsearch -x -H ldaps://svcgroot2.cgiarad.org:3269/ -b &quot;dc=cgiarad,dc=org&quot; -D &quot;admigration1@cgiarad.org&quot; -W &quot;(sAMAccountName=admigration1)&quot;
"/>
<meta name="generator" content="Hugo 0.51" />
<meta name="generator" content="Hugo 0.52" />
@ -764,6 +764,8 @@ $ ./delete-metadata-values.py -i ilrisubjects-delete-13.csv -f cg.subject.ilri -
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2018-12/">December, 2018</a></li>
<li><a href="/cgspace-notes/2018-11/">November, 2018</a></li>
<li><a href="/cgspace-notes/2018-10/">October, 2018</a></li>
@ -772,8 +774,6 @@ $ ./delete-metadata-values.py -i ilrisubjects-delete-13.csv -f cg.subject.ilri -
<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
</ol>
</section>

6
docs/2016-10/index.html
View File

@ -42,7 +42,7 @@ I exported a random item&rsquo;s metadata as CSV, deleted all columns except id
0000-0002-6115-0956||0000-0002-3812-8793||0000-0001-7462-405X
"/>
<meta name="generator" content="Hugo 0.51" />
<meta name="generator" content="Hugo 0.52" />
@ -449,6 +449,8 @@ dspace=# update metadatavalue set text_value = regexp_replace(text_value, 'http:
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2018-12/">December, 2018</a></li>
<li><a href="/cgspace-notes/2018-11/">November, 2018</a></li>
<li><a href="/cgspace-notes/2018-10/">October, 2018</a></li>
@ -457,8 +459,6 @@ dspace=# update metadatavalue set text_value = regexp_replace(text_value, 'http:
<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
</ol>
</section>

6
docs/2016-11/index.html
View File

@ -26,7 +26,7 @@ Add dc.type to the output options for Atmire&rsquo;s Listings and Reports module
"/>
<meta name="generator" content="Hugo 0.51" />
<meta name="generator" content="Hugo 0.52" />
@ -666,6 +666,8 @@ org.dspace.discovery.SearchServiceException: Error executing query
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2018-12/">December, 2018</a></li>
<li><a href="/cgspace-notes/2018-11/">November, 2018</a></li>
<li><a href="/cgspace-notes/2018-10/">October, 2018</a></li>
@ -674,8 +676,6 @@ org.dspace.discovery.SearchServiceException: Error executing query
<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
</ol>
</section>

6
docs/2016-12/index.html
View File

@ -50,7 +50,7 @@ I see thousands of them in the logs for the last few months, so it&rsquo;s not r
I&rsquo;ve raised a ticket with Atmire to ask
Another worrying error from dspace.log is:
"/>
<meta name="generator" content="Hugo 0.51" />
<meta name="generator" content="Hugo 0.52" />
@ -902,6 +902,8 @@ $ exit
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2018-12/">December, 2018</a></li>
<li><a href="/cgspace-notes/2018-11/">November, 2018</a></li>
<li><a href="/cgspace-notes/2018-10/">October, 2018</a></li>
@ -910,8 +912,6 @@ $ exit
<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
</ol>
</section>

6
docs/2017-01/index.html
View File

@ -26,7 +26,7 @@ I checked to see if the Solr sharding task that is supposed to run on January 1s
I tested on DSpace Test as well and it doesn&rsquo;t work there either
I asked on the dspace-tech mailing list because it seems to be broken, and actually now I&rsquo;m not sure if we&rsquo;ve ever had the sharding task run successfully over all these years
"/>
<meta name="generator" content="Hugo 0.51" />
<meta name="generator" content="Hugo 0.52" />
@ -447,6 +447,8 @@ $ gs -sDEVICE=pdfwrite -dCompatibilityLevel=1.4 -dPDFSETTINGS=/ebook -dNOPAUSE -
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2018-12/">December, 2018</a></li>
<li><a href="/cgspace-notes/2018-11/">November, 2018</a></li>
<li><a href="/cgspace-notes/2018-10/">October, 2018</a></li>
@ -455,8 +457,6 @@ $ gs -sDEVICE=pdfwrite -dCompatibilityLevel=1.4 -dPDFSETTINGS=/ebook -dNOPAUSE -
<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
</ol>
</section>

6
docs/2017-02/index.html
View File

@ -54,7 +54,7 @@ DELETE 1
Create issue on GitHub to track the addition of CCAFS Phase II project tags (#301)
Looks like we&rsquo;ll be using cg.identifier.ccafsprojectpii as the field name
"/>
<meta name="generator" content="Hugo 0.51" />
<meta name="generator" content="Hugo 0.52" />
@ -519,6 +519,8 @@ COPY 1968
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2018-12/">December, 2018</a></li>
<li><a href="/cgspace-notes/2018-11/">November, 2018</a></li>
<li><a href="/cgspace-notes/2018-10/">October, 2018</a></li>
@ -527,8 +529,6 @@ COPY 1968
<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
</ol>
</section>

6
docs/2017-03/index.html
View File

@ -58,7 +58,7 @@ Interestingly, it seems DSpace 4.x&rsquo;s thumbnails were sRGB, but forcing reg
$ identify ~/Desktop/alc_contrastes_desafios.jpg
/Users/aorth/Desktop/alc_contrastes_desafios.jpg JPEG 464x600 464x600&#43;0&#43;0 8-bit CMYK 168KB 0.000u 0:00.000
"/>
<meta name="generator" content="Hugo 0.51" />
<meta name="generator" content="Hugo 0.52" />
@ -433,6 +433,8 @@ $ ./delete-metadata-values.py -i Investors-Delete-121.csv -f dc.description.spon
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2018-12/">December, 2018</a></li>
<li><a href="/cgspace-notes/2018-11/">November, 2018</a></li>
<li><a href="/cgspace-notes/2018-10/">October, 2018</a></li>
@ -441,8 +443,6 @@ $ ./delete-metadata-values.py -i Investors-Delete-121.csv -f dc.description.spon
<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
</ol>
</section>

6
docs/2017-04/index.html
View File

@ -44,7 +44,7 @@ Testing the CMYK patch on a collection with 650 items:
$ [dspace]/bin/dspace filter-media -f -i 10568/16498 -p &quot;ImageMagick PDF Thumbnail&quot; -v &gt;&amp; /tmp/filter-media-cmyk.txt
"/>
<meta name="generator" content="Hugo 0.51" />
<meta name="generator" content="Hugo 0.52" />
@ -712,6 +712,8 @@ $ gem install compass -v 1.0.3
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2018-12/">December, 2018</a></li>
<li><a href="/cgspace-notes/2018-11/">November, 2018</a></li>
<li><a href="/cgspace-notes/2018-10/">October, 2018</a></li>
@ -720,8 +722,6 @@ $ gem install compass -v 1.0.3
<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
</ol>
</section>

6
docs/2017-05/index.html
View File

@ -14,7 +14,7 @@
<meta name="twitter:card" content="summary"/>
<meta name="twitter:title" content="May, 2017"/>
<meta name="twitter:description" content="2017-05-01 ICARDA apparently started working on CG Core on their MEL repository They have done a few cg.* fields, but not very consistent and even copy some of CGSpace items: https://mel.cgiar.org/xmlui/handle/20.500.11766/6911?show=full https://cgspace.cgiar.org/handle/10568/73683 2017-05-02 Atmire got back about the Workflow Statistics issue, and apparently it&rsquo;s a bug in the CUA module so they will send us a pull request 2017-05-04 Sync DSpace Test with database and assetstore from CGSpace Re-deploy DSpace Test with Atmire&rsquo;s CUA patch for workflow statistics, run system updates, and restart the server Now I can see the workflow statistics and am able to select users, but everything returns 0 items Megan says there are still some mapped items are not appearing since last week, so I forced a full index-discovery -b Need to remember to check if the collection has more items (currently 39 on CGSpace, but 118 on the freshly reindexed DSPace Test) tomorrow: https://cgspace."/>
<meta name="generator" content="Hugo 0.51" />
<meta name="generator" content="Hugo 0.52" />
@ -472,6 +472,8 @@ UPDATE 187
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2018-12/">December, 2018</a></li>
<li><a href="/cgspace-notes/2018-11/">November, 2018</a></li>
<li><a href="/cgspace-notes/2018-10/">October, 2018</a></li>
@ -480,8 +482,6 @@ UPDATE 187
<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
</ol>
</section>

6
docs/2017-06/index.html
View File

@ -14,7 +14,7 @@
<meta name="twitter:card" content="summary"/>
<meta name="twitter:title" content="June, 2017"/>
<meta name="twitter:description" content="2017-06-01 After discussion with WLE and CGSpace content people, we decided to just add one metadata field for the WLE Research Themes The cg.identifier.wletheme field will be used for both Phase I and Phase II Research Themes Then we&rsquo;ll create a new sub-community for Phase II and create collections for the research themes there The current &ldquo;Research Themes&rdquo; community will be renamed to &ldquo;WLE Phase I Research Themes&rdquo; Tagged all items in the current Phase I collections with their appropriate themes Create pull request to add Phase II research themes to the submission form: #328 Add cg."/>
<meta name="generator" content="Hugo 0.51" />
<meta name="generator" content="Hugo 0.52" />
@ -290,6 +290,8 @@ $ JAVA_OPTS=&quot;-Xmx1024m -Dfile.encoding=UTF-8&quot; [dspace]/bin/dspace impo
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2018-12/">December, 2018</a></li>
<li><a href="/cgspace-notes/2018-11/">November, 2018</a></li>
<li><a href="/cgspace-notes/2018-10/">October, 2018</a></li>
@ -298,8 +300,6 @@ $ JAVA_OPTS=&quot;-Xmx1024m -Dfile.encoding=UTF-8&quot; [dspace]/bin/dspace impo
<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
</ol>
</section>

6
docs/2017-07/index.html
View File

@ -38,7 +38,7 @@ Merge changes for WLE Phase II theme rename (#329)
Looking at extracting the metadata registries from ICARDA&rsquo;s MEL DSpace database so we can compare fields with CGSpace
We can use PostgreSQL&rsquo;s extended output format (-x) plus sed to format the output into quasi XML:
"/>
<meta name="generator" content="Hugo 0.51" />
<meta name="generator" content="Hugo 0.52" />
@ -319,6 +319,8 @@ delete from metadatavalue where resource_type_id=2 and metadata_field_id=235 and
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2018-12/">December, 2018</a></li>
<li><a href="/cgspace-notes/2018-11/">November, 2018</a></li>
<li><a href="/cgspace-notes/2018-10/">October, 2018</a></li>
@ -327,8 +329,6 @@ delete from metadatavalue where resource_type_id=2 and metadata_field_id=235 and
<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
</ol>
</section>

6
docs/2017-08/index.html
View File

@ -58,7 +58,7 @@ This was due to newline characters in the dc.description.abstract column, which
I exported a new CSV from the collection on DSpace Test and then manually removed the characters in vim using g/^$/d
Then I cleaned up the author authorities and HTML characters in OpenRefine and sent the file back to Abenet
"/>
<meta name="generator" content="Hugo 0.51" />
<meta name="generator" content="Hugo 0.52" />
@ -605,6 +605,8 @@ org.apache.commons.dbcp.SQLNestedException: Cannot get a connection, pool error
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2018-12/">December, 2018</a></li>
<li><a href="/cgspace-notes/2018-11/">November, 2018</a></li>
<li><a href="/cgspace-notes/2018-10/">October, 2018</a></li>
@ -613,8 +615,6 @@ org.apache.commons.dbcp.SQLNestedException: Cannot get a connection, pool error
<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
</ol>
</section>

6
docs/2017-09/index.html
View File

@ -34,7 +34,7 @@ Linode sent an alert that CGSpace (linode18) was using 261% CPU for the past two
Ask Sisay to clean up the WLE approvers a bit, as Marianne&rsquo;s user account is both in the approvers step as well as the group
"/>
<meta name="generator" content="Hugo 0.51" />
<meta name="generator" content="Hugo 0.52" />
@ -777,6 +777,8 @@ Cert Status: good
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2018-12/">December, 2018</a></li>
<li><a href="/cgspace-notes/2018-11/">November, 2018</a></li>
<li><a href="/cgspace-notes/2018-10/">October, 2018</a></li>
@ -785,8 +787,6 @@ Cert Status: good
<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
</ol>
</section>

6
docs/2017-10/index.html
View File

@ -38,7 +38,7 @@ http://hdl.handle.net/10568/78495||http://hdl.handle.net/10568/79336
There appears to be a pattern but I&rsquo;ll have to look a bit closer and try to clean them up automatically, either in SQL or in OpenRefine
Add Katherine Lutz to the groups for content submission and edit steps of the CGIAR System collections
"/>
<meta name="generator" content="Hugo 0.51" />
<meta name="generator" content="Hugo 0.52" />
@ -542,6 +542,8 @@ session_id=6C30F10B4351A4ED83EC6ED50AFD6B6A
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2018-12/">December, 2018</a></li>
<li><a href="/cgspace-notes/2018-11/">November, 2018</a></li>
<li><a href="/cgspace-notes/2018-10/">October, 2018</a></li>
@ -550,8 +552,6 @@ session_id=6C30F10B4351A4ED83EC6ED50AFD6B6A
<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
</ol>
</section>

6
docs/2017-11/index.html
View File

@ -58,7 +58,7 @@ Generate list of authors on CGSpace for Peter to go through and correct:
dspace=# \copy (select distinct text_value, count(*) as count from metadatavalue where metadata_field_id = (select metadata_field_id from metadatafieldregistry where element = &#39;contributor&#39; and qualifier = &#39;author&#39;) AND resource_type_id = 2 group by text_value order by count desc) to /tmp/authors.csv with csv;
COPY 54701
"/>
<meta name="generator" content="Hugo 0.51" />
<meta name="generator" content="Hugo 0.52" />
@ -1186,6 +1186,8 @@ $ cat dspace.log.2017-11-28 | grep -o -E 'session_id=[A-Z0-9]{32}' | sort -n | u
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2018-12/">December, 2018</a></li>
<li><a href="/cgspace-notes/2018-11/">November, 2018</a></li>
<li><a href="/cgspace-notes/2018-10/">October, 2018</a></li>
@ -1194,8 +1196,6 @@ $ cat dspace.log.2017-11-28 | grep -o -E 'session_id=[A-Z0-9]{32}' | sort -n | u
<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
</ol>
</section>

6
docs/2017-12/index.html
View File

@ -28,7 +28,7 @@ The logs say &ldquo;Timeout waiting for idle object&rdquo;
PostgreSQL activity says there are 115 connections currently
The list of connections to XMLUI and REST API for today:
"/>
<meta name="generator" content="Hugo 0.51" />
<meta name="generator" content="Hugo 0.52" />
@ -951,6 +951,8 @@ DELETE 20
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2018-12/">December, 2018</a></li>
<li><a href="/cgspace-notes/2018-11/">November, 2018</a></li>
<li><a href="/cgspace-notes/2018-10/">October, 2018</a></li>
@ -959,8 +961,6 @@ DELETE 20
<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
</ol>
</section>

6
docs/2018-01/index.html
View File

@ -166,7 +166,7 @@ dspace.log.2018-01-02:34
Danny wrote to ask for help renewing the wildcard ilri.org certificate and I advised that we should probably use Let&rsquo;s Encrypt if it&rsquo;s just a handful of domains
"/>
<meta name="generator" content="Hugo 0.51" />
<meta name="generator" content="Hugo 0.52" />
@ -1778,6 +1778,8 @@ Catalina:type=Manager,context=/,host=localhost activeSessions 8
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2018-12/">December, 2018</a></li>
<li><a href="/cgspace-notes/2018-11/">November, 2018</a></li>
<li><a href="/cgspace-notes/2018-10/">October, 2018</a></li>
@ -1786,8 +1788,6 @@ Catalina:type=Manager,context=/,host=localhost activeSessions 8
<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
</ol>
</section>

6
docs/2018-02/index.html
View File

@ -28,7 +28,7 @@ We don&rsquo;t need to distinguish between internal and external works, so that
Yesterday I figured out how to monitor DSpace sessions using JMX
I copied the logic in the jmx_tomcat_dbpools provided by Ubuntu&rsquo;s munin-plugins-java package and used the stuff I discovered about JMX in 2018-01
"/>
<meta name="generator" content="Hugo 0.51" />
<meta name="generator" content="Hugo 0.52" />
@ -1297,6 +1297,8 @@ UPDATE 3
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2018-12/">December, 2018</a></li>
<li><a href="/cgspace-notes/2018-11/">November, 2018</a></li>
<li><a href="/cgspace-notes/2018-10/">October, 2018</a></li>
@ -1305,8 +1307,6 @@ UPDATE 3
<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
</ol>
</section>

6
docs/2018-03/index.html
View File

@ -22,7 +22,7 @@ Export a CSV of the IITA community metadata for Martin Mueller
Export a CSV of the IITA community metadata for Martin Mueller
"/>
<meta name="generator" content="Hugo 0.51" />
<meta name="generator" content="Hugo 0.52" />
@ -724,6 +724,8 @@ Fixed 5 occurences of: GENEBANKS
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2018-12/">December, 2018</a></li>
<li><a href="/cgspace-notes/2018-11/">November, 2018</a></li>
<li><a href="/cgspace-notes/2018-10/">October, 2018</a></li>
@ -732,8 +734,6 @@ Fixed 5 occurences of: GENEBANKS
<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
</ol>
</section>

6
docs/2018-04/index.html
View File

@ -24,7 +24,7 @@ Catalina logs at least show some memory errors yesterday:
I tried to test something on DSpace Test but noticed that it&rsquo;s down since god knows when
Catalina logs at least show some memory errors yesterday:
"/>
<meta name="generator" content="Hugo 0.51" />
<meta name="generator" content="Hugo 0.52" />
@ -721,6 +721,8 @@ $ pg_restore -O -U dspacetest -d dspacetest -W -h localhost /tmp/dspace_2018-04-
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2018-12/">December, 2018</a></li>
<li><a href="/cgspace-notes/2018-11/">November, 2018</a></li>
<li><a href="/cgspace-notes/2018-10/">October, 2018</a></li>
@ -729,8 +731,6 @@ $ pg_restore -O -U dspacetest -d dspacetest -W -h localhost /tmp/dspace_2018-04-
<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
</ol>
</section>

6
docs/2018-05/index.html
View File

@ -36,7 +36,7 @@ http://localhost:3000/solr/statistics/update?stream.body=%3Ccommit/%3E
Then I reduced the JVM heap size from 6144 back to 5120m
Also, I switched it to use OpenJDK instead of Oracle Java, as well as re-worked the Ansible infrastructure scripts to support hosts choosing which distribution they want to use
"/>
<meta name="generator" content="Hugo 0.51" />
<meta name="generator" content="Hugo 0.52" />
@ -600,6 +600,8 @@ $ psql -h localhost -U postgres dspacetest
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2018-12/">December, 2018</a></li>
<li><a href="/cgspace-notes/2018-11/">November, 2018</a></li>
<li><a href="/cgspace-notes/2018-10/">October, 2018</a></li>
@ -608,8 +610,6 @@ $ psql -h localhost -U postgres dspacetest
<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
</ol>
</section>

6
docs/2018-06/index.html
View File

@ -64,7 +64,7 @@ real 74m42.646s
user 8m5.056s
sys 2m7.289s
"/>
<meta name="generator" content="Hugo 0.51" />
<meta name="generator" content="Hugo 0.52" />
@ -580,6 +580,8 @@ $ sed '/^id/d' 10568-*.csv | csvcut -c 1,2 &gt; map-to-cifor-archive.csv
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2018-12/">December, 2018</a></li>
<li><a href="/cgspace-notes/2018-11/">November, 2018</a></li>
<li><a href="/cgspace-notes/2018-10/">October, 2018</a></li>
@ -588,8 +590,6 @@ $ sed '/^id/d' 10568-*.csv | csvcut -c 1,2 &gt; map-to-cifor-archive.csv
<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
</ol>
</section>

6
docs/2018-07/index.html
View File

@ -42,7 +42,7 @@ During the mvn package stage on the 5.8 branch I kept getting issues with java r
There is insufficient memory for the Java Runtime Environment to continue.
"/>
<meta name="generator" content="Hugo 0.51" />
<meta name="generator" content="Hugo 0.52" />
@ -691,6 +691,8 @@ dspace=# select count(text_value) from metadatavalue where resource_type_id=2 an
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2018-12/">December, 2018</a></li>
<li><a href="/cgspace-notes/2018-11/">November, 2018</a></li>
<li><a href="/cgspace-notes/2018-10/">October, 2018</a></li>
@ -699,8 +701,6 @@ dspace=# select count(text_value) from metadatavalue where resource_type_id=2 an
<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
</ol>
</section>

6
docs/2018-08/index.html
View File

@ -50,7 +50,7 @@ Anyways, perhaps I should increase the JVM heap from 5120m to 6144m like we did
The server only has 8GB of RAM so we&rsquo;ll eventually need to upgrade to a larger one because we&rsquo;ll start starving the OS, PostgreSQL, and command line batch processes
I ran all system updates on DSpace Test and rebooted it
"/>
<meta name="generator" content="Hugo 0.51" />
<meta name="generator" content="Hugo 0.52" />
@ -527,6 +527,8 @@ $ dspace database migrate ignored
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2018-12/">December, 2018</a></li>
<li><a href="/cgspace-notes/2018-11/">November, 2018</a></li>
<li><a href="/cgspace-notes/2018-10/">October, 2018</a></li>
@ -535,8 +537,6 @@ $ dspace database migrate ignored
<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
</ol>
</section>

6
docs/2018-09/index.html
View File

@ -28,7 +28,7 @@ I&rsquo;ll update the DSpace role in our Ansible infrastructure playbooks and ru
Also, I&rsquo;ll re-run the postgresql tasks because the custom PostgreSQL variables are dynamic according to the system&rsquo;s RAM, and we never re-ran them after migrating to larger Linodes last month
I&rsquo;m testing the new DSpace 5.8 branch in my Ubuntu 18.04 environment and I&rsquo;m getting those autowire errors in Tomcat 8.5.30 again:
"/>
<meta name="generator" content="Hugo 0.51" />
<meta name="generator" content="Hugo 0.52" />
@ -905,6 +905,8 @@ UPDATE metadatavalue SET text_value='ja' WHERE resource_type_id=2 AND metadata_f
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2018-12/">December, 2018</a></li>
<li><a href="/cgspace-notes/2018-11/">November, 2018</a></li>
<li><a href="/cgspace-notes/2018-10/">October, 2018</a></li>
@ -913,8 +915,6 @@ UPDATE metadatavalue SET text_value='ja' WHERE resource_type_id=2 AND metadata_f
<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
</ol>
</section>

6
docs/2018-10/index.html
View File

@ -24,7 +24,7 @@ I created a GitHub issue to track this #389, because I&rsquo;m super busy in Nai
Phil Thornton got an ORCID identifier so we need to add it to the list on CGSpace and tag his existing items
I created a GitHub issue to track this #389, because I&rsquo;m super busy in Nairobi right now
"/>
<meta name="generator" content="Hugo 0.51" />
<meta name="generator" content="Hugo 0.52" />
@ -808,6 +808,8 @@ $ curl -X GET -H &quot;Content-Type: application/json&quot; -H &quot;Accept: app
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2018-12/">December, 2018</a></li>
<li><a href="/cgspace-notes/2018-11/">November, 2018</a></li>
<li><a href="/cgspace-notes/2018-10/">October, 2018</a></li>
@ -816,8 +818,6 @@ $ curl -X GET -H &quot;Content-Type: application/json&quot; -H &quot;Accept: app
<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
</ol>
</section>

10
docs/2018-11/index.html
View File

@ -21,7 +21,7 @@ Today these are the top 10 IPs:
" />
<meta property="og:type" content="article" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/2018-11/" /><meta property="article:published_time" content="2018-11-01T16:41:30&#43;02:00"/>
<meta property="article:modified_time" content="2018-11-28T09:11:39&#43;02:00"/>
<meta property="article:modified_time" content="2018-11-28T09:32:04&#43;02:00"/>
<meta name="twitter:card" content="summary"/>
<meta name="twitter:title" content="November, 2018"/>
@ -38,7 +38,7 @@ Send a note about my dspace-statistics-api to the dspace-tech mailing list
Linode has been sending mails a few times a day recently that CGSpace (linode18) has had high CPU usage
Today these are the top 10 IPs:
"/>
<meta name="generator" content="Hugo 0.51" />
<meta name="generator" content="Hugo 0.52" />
@ -50,7 +50,7 @@ Today these are the top 10 IPs:
"url": "https://alanorth.github.io/cgspace-notes/2018-11/",
"wordCount": "2698",
"datePublished": "2018-11-01T16:41:30&#43;02:00",
"dateModified": "2018-11-28T09:11:39&#43;02:00",
"dateModified": "2018-11-28T09:32:04&#43;02:00",
"author": {
"@type": "Person",
"name": "Alan Orth"
@ -655,6 +655,8 @@ $ dspace dsrun org.dspace.eperson.Groomer -a -b 11/27/2016 -d
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2018-12/">December, 2018</a></li>
<li><a href="/cgspace-notes/2018-11/">November, 2018</a></li>
<li><a href="/cgspace-notes/2018-10/">October, 2018</a></li>
@ -663,8 +665,6 @@ $ dspace dsrun org.dspace.eperson.Groomer -a -b 11/27/2016 -d
<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
</ol>
</section>

233
docs/2018-12/index.html Normal file
View File

@ -0,0 +1,233 @@
<!DOCTYPE html>
<html lang="en">
<head>
<meta charset="utf-8">
<meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no">
<meta property="og:title" content="December, 2018" />
<meta property="og:description" content="2018-12-01
Switch CGSpace (linode18) to use OpenJDK instead of Oracle JDK
I manually installed OpenJDK, then removed Oracle JDK, then re-ran the Ansible playbook to update all configuration files, etc
Then I ran all system updates and restarted the server
2018-12-02
I noticed that there is another issue with PDF thumbnails on CGSpace, and I see there was another Ghostscript vulnerability last week
" />
<meta property="og:type" content="article" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/2018-12/" /><meta property="article:published_time" content="2018-12-02T02:09:30&#43;02:00"/>
<meta property="article:modified_time" content="2018-12-02T02:09:30&#43;02:00"/>
<meta name="twitter:card" content="summary"/>
<meta name="twitter:title" content="December, 2018"/>
<meta name="twitter:description" content="2018-12-01
Switch CGSpace (linode18) to use OpenJDK instead of Oracle JDK
I manually installed OpenJDK, then removed Oracle JDK, then re-ran the Ansible playbook to update all configuration files, etc
Then I ran all system updates and restarted the server
2018-12-02
I noticed that there is another issue with PDF thumbnails on CGSpace, and I see there was another Ghostscript vulnerability last week
"/>
<meta name="generator" content="Hugo 0.52" />
<script type="application/ld+json">
{
"@context": "http://schema.org",
"@type": "BlogPosting",
"headline": "December, 2018",
"url": "https://alanorth.github.io/cgspace-notes/2018-12/",
"wordCount": "202",
"datePublished": "2018-12-02T02:09:30&#43;02:00",
"dateModified": "2018-12-02T02:09:30&#43;02:00",
"author": {
"@type": "Person",
"name": "Alan Orth"
},
"keywords": "Notes"
}
</script>
<link rel="canonical" href="https://alanorth.github.io/cgspace-notes/2018-12/">
<title>December, 2018 | CGSpace Notes</title>
<!-- combined, minified CSS -->
<link href="https://alanorth.github.io/cgspace-notes/css/style.css" rel="stylesheet" integrity="sha384-Upm5uY/SXdvbjuIGH6fBjF5vOYUr9DguqBskM&#43;EQpLBzO9U&#43;9fMVmWEt&#43;TTlGrWQ" crossorigin="anonymous">
</head>
<body>
<div class="blog-masthead">
<div class="container">
<nav class="nav blog-nav">
<a class="nav-link " href="https://alanorth.github.io/cgspace-notes/">Home</a>
</nav>
</div>
</div>
<header class="blog-header">
<div class="container">
<h1 class="blog-title"><a href="https://alanorth.github.io/cgspace-notes/" rel="home">CGSpace Notes</a></h1>
<p class="lead blog-description">Documenting day-to-day work on the <a href="https://cgspace.cgiar.org">CGSpace</a> repository.</p>
</div>
</header>
<div class="container">
<div class="row">
<div class="col-sm-8 blog-main">
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2018-12/">December, 2018</a></h2>
<p class="blog-post-meta"><time datetime="2018-12-02T02:09:30&#43;02:00">Sun Dec 02, 2018</time> by Alan Orth in
<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
</p>
</header>
<h2 id="2018-12-01">2018-12-01</h2>
<ul>
<li>Switch CGSpace (linode18) to use OpenJDK instead of Oracle JDK</li>
<li>I manually installed OpenJDK, then removed Oracle JDK, then re-ran the <a href="http://github.com/ilri/rmg-ansible-public">Ansible playbook</a> to update all configuration files, etc</li>
<li>Then I ran all system updates and restarted the server</li>
</ul>
<h2 id="2018-12-02">2018-12-02</h2>
<ul>
<li>I noticed that there is another issue with PDF thumbnails on CGSpace, and I see there was another <a href="https://usn.ubuntu.com/3831-1/">Ghostscript vulnerability last week</a></li>
</ul>
<ul>
<li>The error when I try to manually run the media filter for one item from the command line:</li>
</ul>
<pre><code>org.im4java.core.InfoException: org.im4java.core.CommandException: org.im4java.core.CommandException: identify: FailedToExecuteCommand `&quot;gs&quot; -q -dQUIET -dSAFER -dBATCH -dNOPAUSE -dNOPROMPT -dMaxBitmap=500000000 -dAlignToPixels=0 -dGridFitTT=2 &quot;-sDEVICE=pngalpha&quot; -dTextAlphaBits=4 -dGraphicsAlphaBits=4 &quot;-r72x72&quot; -dFirstPage=1 -dLastPage=1 &quot;-sOutputFile=/tmp/magick-12989PcFN0DnJOej7%d&quot; &quot;-f/tmp/magick-129895Bmp44lvUfxo&quot; &quot;-f/tmp/magick-12989C0QFG51fktLF&quot;' (-1) @ error/delegate.c/ExternalDelegateCommand/461.
org.im4java.core.InfoException: org.im4java.core.CommandException: org.im4java.core.CommandException: identify: FailedToExecuteCommand `&quot;gs&quot; -q -dQUIET -dSAFER -dBATCH -dNOPAUSE -dNOPROMPT -dMaxBitmap=500000000 -dAlignToPixels=0 -dGridFitTT=2 &quot;-sDEVICE=pngalpha&quot; -dTextAlphaBits=4 -dGraphicsAlphaBits=4 &quot;-r72x72&quot; -dFirstPage=1 -dLastPage=1 &quot;-sOutputFile=/tmp/magick-12989PcFN0DnJOej7%d&quot; &quot;-f/tmp/magick-129895Bmp44lvUfxo&quot; &quot;-f/tmp/magick-12989C0QFG51fktLF&quot;' (-1) @ error/delegate.c/ExternalDelegateCommand/461.
at org.im4java.core.Info.getBaseInfo(Info.java:360)
at org.im4java.core.Info.&lt;init&gt;(Info.java:151)
at org.dspace.app.mediafilter.ImageMagickThumbnailFilter.getImageFile(ImageMagickThumbnailFilter.java:142)
at org.dspace.app.mediafilter.ImageMagickPdfThumbnailFilter.getDestinationStream(ImageMagickPdfThumbnailFilter.java:24)
at org.dspace.app.mediafilter.FormatFilter.processBitstream(FormatFilter.java:170)
at org.dspace.app.mediafilter.MediaFilterManager.filterBitstream(MediaFilterManager.java:475)
at org.dspace.app.mediafilter.MediaFilterManager.filterItem(MediaFilterManager.java:429)
at org.dspace.app.mediafilter.MediaFilterManager.applyFiltersItem(MediaFilterManager.java:401)
at org.dspace.app.mediafilter.MediaFilterManager.main(MediaFilterManager.java:237)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.dspace.app.launcher.ScriptLauncher.runOneCommand(ScriptLauncher.java:226)
at org.dspace.app.launcher.ScriptLauncher.main(ScriptLauncher.java:78)
</code></pre>
<ul>
<li>A comment on <a href="https://stackoverflow.com/questions/53560755/ghostscript-9-26-update-breaks-imagick-readimage-for-multipage-pdf">StackOverflow question</a> from yesterday suggests it might be a bug with the <code>pngalpha</code> device in Ghostscript and <a href="https://bugs.ghostscript.com/show_bug.cgi?id=699815">links to an upstream bug</a></li>
<li>I think we need to wait for a fix from Ubuntu</li>
</ul>
<!-- vim: set sw=2 ts=2: -->
</article>
</div> <!-- /.blog-main -->
<aside class="col-sm-3 ml-auto blog-sidebar">
<section class="sidebar-module">
<h4>Recent Posts</h4>
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2018-12/">December, 2018</a></li>
<li><a href="/cgspace-notes/2018-11/">November, 2018</a></li>
<li><a href="/cgspace-notes/2018-10/">October, 2018</a></li>
<li><a href="/cgspace-notes/2018-09/">September, 2018</a></li>
<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
</ol>
</section>
<section class="sidebar-module">
<h4>Links</h4>
<ol class="list-unstyled">
<li><a href="https://cgspace.cgiar.org">CGSpace</a></li>
<li><a href="https://dspacetest.cgiar.org">DSpace Test</a></li>
<li><a href="https://github.com/ilri/DSpace">CGSpace @ GitHub</a></li>
</ol>
</section>
</aside>
</div> <!-- /.row -->
</div> <!-- /.container -->
<footer class="blog-footer">
<p>
Blog template created by <a href="https://twitter.com/mdo">@mdo</a>, ported to Hugo by <a href='https://twitter.com/mralanorth'>@mralanorth</a>.
</p>
<p>
<a href="#">Back to top</a>
</p>
</footer>
</body>
</html>

6
docs/404.html
View File

@ -13,7 +13,7 @@
<meta name="twitter:card" content="summary"/>
<meta name="twitter:title" content="404 Page not found"/>
<meta name="twitter:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."/>
<meta name="generator" content="Hugo 0.51" />
<meta name="generator" content="Hugo 0.52" />
@ -85,6 +85,8 @@
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2018-12/">December, 2018</a></li>
<li><a href="/cgspace-notes/2018-11/">November, 2018</a></li>
<li><a href="/cgspace-notes/2018-10/">October, 2018</a></li>
@ -93,8 +95,6 @@
<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
</ol>
</section>

61
docs/categories/index.html
View File

@ -13,7 +13,7 @@
<meta name="twitter:card" content="summary"/>
<meta name="twitter:title" content="Categories"/>
<meta name="twitter:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."/>
<meta name="generator" content="Hugo 0.51" />
<meta name="generator" content="Hugo 0.52" />
@ -87,6 +87,36 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2018-12/">December, 2018</a></h2>
<p class="blog-post-meta"><time datetime="2018-12-02T02:09:30&#43;02:00">Sun Dec 02, 2018</time> by Alan Orth in
<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
</p>
</header>
<h2 id="2018-12-01">2018-12-01</h2>
<ul>
<li>Switch CGSpace (linode18) to use OpenJDK instead of Oracle JDK</li>
<li>I manually installed OpenJDK, then removed Oracle JDK, then re-ran the <a href="http://github.com/ilri/rmg-ansible-public">Ansible playbook</a> to update all configuration files, etc</li>
<li>Then I ran all system updates and restarted the server</li>
</ul>
<h2 id="2018-12-02">2018-12-02</h2>
<ul>
<li>I noticed that there is another issue with PDF thumbnails on CGSpace, and I see there was another <a href="https://usn.ubuntu.com/3831-1/">Ghostscript vulnerability last week</a></li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2018-12/'>Read more →</a>
</article>
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2018-11/">November, 2018</a></h2>
@ -349,31 +379,6 @@ sys 2m7.289s
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2018-02/">February, 2018</a></h2>
<p class="blog-post-meta"><time datetime="2018-02-01T16:28:54&#43;02:00">Thu Feb 01, 2018</time> by Alan Orth in
<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
</p>
</header>
<h2 id="2018-02-01">2018-02-01</h2>
<ul>
<li>Peter gave feedback on the <code>dc.rights</code> proof of concept that I had sent him last week</li>
<li>We don&rsquo;t need to distinguish between internal and external works, so that makes it just a simple list</li>
<li>Yesterday I figured out how to monitor DSpace sessions using JMX</li>
<li>I copied the logic in the <code>jmx_tomcat_dbpools</code> provided by Ubuntu&rsquo;s <code>munin-plugins-java</code> package and used the stuff I discovered about JMX <a href="/cgspace-notes/2018-01/">in 2018-01</a></li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2018-02/'>Read more →</a>
</article>
<nav class="blog-pagination">
@ -398,6 +403,8 @@ sys 2m7.289s
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2018-12/">December, 2018</a></li>
<li><a href="/cgspace-notes/2018-11/">November, 2018</a></li>
<li><a href="/cgspace-notes/2018-10/">October, 2018</a></li>
@ -406,8 +413,6 @@ sys 2m7.289s
<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
</ol>
</section>

6
docs/categories/notes/index.html
View File

@ -14,7 +14,7 @@
<meta name="twitter:card" content="summary"/>
<meta name="twitter:title" content="Notes"/>
<meta name="twitter:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."/>
<meta name="generator" content="Hugo 0.51" />
<meta name="generator" content="Hugo 0.52" />
@ -105,6 +105,8 @@
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2018-12/">December, 2018</a></li>
<li><a href="/cgspace-notes/2018-11/">November, 2018</a></li>
<li><a href="/cgspace-notes/2018-10/">October, 2018</a></li>
@ -113,8 +115,6 @@
<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
</ol>
</section>

53
docs/categories/page/2/index.html
View File

@ -9,12 +9,12 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/" />
<meta property="og:updated_time" content="2018-01-02T08:35:54-08:00"/>
<meta property="og:updated_time" content="2018-02-01T16:28:54&#43;02:00"/>
<meta name="twitter:card" content="summary"/>
<meta name="twitter:title" content="Categories"/>
<meta name="twitter:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."/>
<meta name="generator" content="Hugo 0.51" />
<meta name="generator" content="Hugo 0.52" />
@ -28,7 +28,7 @@
"@type": "Person",
"name": "Alan Orth"
},
"dateModified": "2018-01-02T08:35:54-08:00",
"dateModified": "2018-02-01T16:28:54&#43;02:00",
"keywords": "notes,notes,",
"description": "Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
}
@ -89,6 +89,31 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2018-02/">February, 2018</a></h2>
<p class="blog-post-meta"><time datetime="2018-02-01T16:28:54&#43;02:00">Thu Feb 01, 2018</time> by Alan Orth in
<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
</p>
</header>
<h2 id="2018-02-01">2018-02-01</h2>
<ul>
<li>Peter gave feedback on the <code>dc.rights</code> proof of concept that I had sent him last week</li>
<li>We don&rsquo;t need to distinguish between internal and external works, so that makes it just a simple list</li>
<li>Yesterday I figured out how to monitor DSpace sessions using JMX</li>
<li>I copied the logic in the <code>jmx_tomcat_dbpools</code> provided by Ubuntu&rsquo;s <code>munin-plugins-java</code> package and used the stuff I discovered about JMX <a href="/cgspace-notes/2018-01/">in 2018-01</a></li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2018-02/'>Read more →</a>
</article>
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2018-01/">January, 2018</a></h2>
@ -411,24 +436,6 @@ COPY 54701
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2017-05/">May, 2017</a></h2>
<p class="blog-post-meta"><time datetime="2017-05-01T16:21:52&#43;02:00">Mon May 01, 2017</time> by Alan Orth in
<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
</p>
</header>
2017-05-01 ICARDA apparently started working on CG Core on their MEL repository They have done a few cg.* fields, but not very consistent and even copy some of CGSpace items: https://mel.cgiar.org/xmlui/handle/20.500.11766/6911?show=full https://cgspace.cgiar.org/handle/10568/73683 2017-05-02 Atmire got back about the Workflow Statistics issue, and apparently it&rsquo;s a bug in the CUA module so they will send us a pull request 2017-05-04 Sync DSpace Test with database and assetstore from CGSpace Re-deploy DSpace Test with Atmire&rsquo;s CUA patch for workflow statistics, run system updates, and restart the server Now I can see the workflow statistics and am able to select users, but everything returns 0 items Megan says there are still some mapped items are not appearing since last week, so I forced a full index-discovery -b Need to remember to check if the collection has more items (currently 39 on CGSpace, but 118 on the freshly reindexed DSPace Test) tomorrow: https://cgspace.
<a href='https://alanorth.github.io/cgspace-notes/2017-05/'>Read more →</a>
</article>
<nav class="blog-pagination">
<a class="btn btn-outline-primary" href="/cgspace-notes/categories/" rel="prev" role="button">Previous page</a>
@ -453,6 +460,8 @@ COPY 54701
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2018-12/">December, 2018</a></li>
<li><a href="/cgspace-notes/2018-11/">November, 2018</a></li>
<li><a href="/cgspace-notes/2018-10/">October, 2018</a></li>
@ -461,8 +470,6 @@ COPY 54701
<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
</ol>
</section>

63
docs/categories/page/3/index.html
View File

@ -9,12 +9,12 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/" />
<meta property="og:updated_time" content="2017-04-02T17:08:52&#43;02:00"/>
<meta property="og:updated_time" content="2017-05-01T16:21:52&#43;02:00"/>
<meta name="twitter:card" content="summary"/>
<meta name="twitter:title" content="Categories"/>
<meta name="twitter:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."/>
<meta name="generator" content="Hugo 0.51" />
<meta name="generator" content="Hugo 0.52" />
@ -28,7 +28,7 @@
"@type": "Person",
"name": "Alan Orth"
},
"dateModified": "2017-04-02T17:08:52&#43;02:00",
"dateModified": "2017-05-01T16:21:52&#43;02:00",
"keywords": "notes,notes,",
"description": "Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
}
@ -89,6 +89,24 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2017-05/">May, 2017</a></h2>
<p class="blog-post-meta"><time datetime="2017-05-01T16:21:52&#43;02:00">Mon May 01, 2017</time> by Alan Orth in
<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
</p>
</header>
2017-05-01 ICARDA apparently started working on CG Core on their MEL repository They have done a few cg.* fields, but not very consistent and even copy some of CGSpace items: https://mel.cgiar.org/xmlui/handle/20.500.11766/6911?show=full https://cgspace.cgiar.org/handle/10568/73683 2017-05-02 Atmire got back about the Workflow Statistics issue, and apparently it&rsquo;s a bug in the CUA module so they will send us a pull request 2017-05-04 Sync DSpace Test with database and assetstore from CGSpace Re-deploy DSpace Test with Atmire&rsquo;s CUA patch for workflow statistics, run system updates, and restart the server Now I can see the workflow statistics and am able to select users, but everything returns 0 items Megan says there are still some mapped items are not appearing since last week, so I forced a full index-discovery -b Need to remember to check if the collection has more items (currently 39 on CGSpace, but 118 on the freshly reindexed DSPace Test) tomorrow: https://cgspace.
<a href='https://alanorth.github.io/cgspace-notes/2017-05/'>Read more →</a>
</article>
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2017-04/">April, 2017</a></h2>
@ -375,41 +393,6 @@ $ git rebase -i dspace-5.5
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-07/">July, 2016</a></h2>
<p class="blog-post-meta"><time datetime="2016-07-01T10:53:00&#43;03:00">Fri Jul 01, 2016</time> by Alan Orth in
<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
</p>
</header>
<h2 id="2016-07-01">2016-07-01</h2>
<ul>
<li>Add <code>dc.description.sponsorship</code> to Discovery sidebar facets and make investors clickable in item view (<a href="https://github.com/ilri/DSpace/issues/232">#232</a>)</li>
<li>I think this query should find and replace all authors that have &ldquo;,&rdquo; at the end of their names:</li>
</ul>
<pre><code>dspacetest=# update metadatavalue set text_value = regexp_replace(text_value, '(^.+?),$', '\1') where metadata_field_id=3 and resource_type_id=2 and text_value ~ '^.+?,$';
UPDATE 95
dspacetest=# select text_value from metadatavalue where metadata_field_id=3 and resource_type_id=2 and text_value ~ '^.+?,$';
text_value
------------
(0 rows)
</code></pre>
<ul>
<li>In this case the select query was showing 95 results before the update</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2016-07/'>Read more →</a>
</article>
<nav class="blog-pagination">
<a class="btn btn-outline-primary" href="/cgspace-notes/categories/page/2/" rel="prev" role="button">Previous page</a>
@ -434,6 +417,8 @@ dspacetest=# select text_value from metadatavalue where metadata_field_id=3 and
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2018-12/">December, 2018</a></li>
<li><a href="/cgspace-notes/2018-11/">November, 2018</a></li>
<li><a href="/cgspace-notes/2018-10/">October, 2018</a></li>
@ -442,8 +427,6 @@ dspacetest=# select text_value from metadatavalue where metadata_field_id=3 and
<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
</ol>
</section>

47
docs/categories/page/4/index.html
View File

@ -9,12 +9,12 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/" />
<meta property="og:updated_time" content="2016-06-01T10:53:00&#43;03:00"/>
<meta property="og:updated_time" content="2016-07-01T10:53:00&#43;03:00"/>
<meta name="twitter:card" content="summary"/>
<meta name="twitter:title" content="Categories"/>
<meta name="twitter:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."/>
<meta name="generator" content="Hugo 0.51" />
<meta name="generator" content="Hugo 0.52" />
@ -28,7 +28,7 @@
"@type": "Person",
"name": "Alan Orth"
},
"dateModified": "2016-06-01T10:53:00&#43;03:00",
"dateModified": "2016-07-01T10:53:00&#43;03:00",
"keywords": "notes,notes,",
"description": "Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
}
@ -89,6 +89,41 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-07/">July, 2016</a></h2>
<p class="blog-post-meta"><time datetime="2016-07-01T10:53:00&#43;03:00">Fri Jul 01, 2016</time> by Alan Orth in
<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
</p>
</header>
<h2 id="2016-07-01">2016-07-01</h2>
<ul>
<li>Add <code>dc.description.sponsorship</code> to Discovery sidebar facets and make investors clickable in item view (<a href="https://github.com/ilri/DSpace/issues/232">#232</a>)</li>
<li>I think this query should find and replace all authors that have &ldquo;,&rdquo; at the end of their names:</li>
</ul>
<pre><code>dspacetest=# update metadatavalue set text_value = regexp_replace(text_value, '(^.+?),$', '\1') where metadata_field_id=3 and resource_type_id=2 and text_value ~ '^.+?,$';
UPDATE 95
dspacetest=# select text_value from metadatavalue where metadata_field_id=3 and resource_type_id=2 and text_value ~ '^.+?,$';
text_value
------------
(0 rows)
</code></pre>
<ul>
<li>In this case the select query was showing 95 results before the update</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2016-07/'>Read more →</a>
</article>
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-06/">June, 2016</a></h2>
@ -309,7 +344,7 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/posts/">Posts</a></h2>
<p class="blog-post-meta"><time datetime="2018-11-01T16:41:30&#43;02:00">Thu Nov 01, 2018</time> by Alan Orth</p>
<p class="blog-post-meta"><time datetime="2018-12-02T02:09:30&#43;02:00">Sun Dec 02, 2018</time> by Alan Orth</p>
</header>
<a href='https://alanorth.github.io/cgspace-notes/posts/'>Read more →</a>
@ -343,6 +378,8 @@
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2018-12/">December, 2018</a></li>
<li><a href="/cgspace-notes/2018-11/">November, 2018</a></li>
<li><a href="/cgspace-notes/2018-10/">October, 2018</a></li>
@ -351,8 +388,6 @@
<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
</ol>
</section>

6
docs/cgiar-library-migration/index.html
View File

@ -14,7 +14,7 @@
<meta name="twitter:card" content="summary"/>
<meta name="twitter:title" content="CGIAR Library Migration"/>
<meta name="twitter:description" content="Notes on the migration of the CGIAR Library to CGSpace"/>
<meta name="generator" content="Hugo 0.51" />
<meta name="generator" content="Hugo 0.52" />
@ -323,6 +323,8 @@ dspace=# select setval('handle_seq',86873);
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2018-12/">December, 2018</a></li>
<li><a href="/cgspace-notes/2018-11/">November, 2018</a></li>
<li><a href="/cgspace-notes/2018-10/">October, 2018</a></li>
@ -331,8 +333,6 @@ dspace=# select setval('handle_seq',86873);
<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
</ol>
</section>

65
docs/index.html
View File

@ -9,12 +9,12 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />
<meta property="og:updated_time" content="2018-11-01T16:41:30&#43;02:00"/>
<meta property="og:updated_time" content="2018-12-02T02:09:30&#43;02:00"/>
<meta name="twitter:card" content="summary"/>
<meta name="twitter:title" content="CGSpace Notes"/>
<meta name="twitter:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."/>
<meta name="generator" content="Hugo 0.51" />
<meta name="generator" content="Hugo 0.52" />
@ -28,7 +28,7 @@
"@type": "Person",
"name": "Alan Orth"
},
"dateModified": "2018-11-01T16:41:30&#43;02:00",
"dateModified": "2018-12-02T02:09:30&#43;02:00",
"keywords": "notes,notes,",
"description": "Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
}
@ -89,6 +89,36 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2018-12/">December, 2018</a></h2>
<p class="blog-post-meta"><time datetime="2018-12-02T02:09:30&#43;02:00">Sun Dec 02, 2018</time> by Alan Orth in
<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
</p>
</header>
<h2 id="2018-12-01">2018-12-01</h2>
<ul>
<li>Switch CGSpace (linode18) to use OpenJDK instead of Oracle JDK</li>
<li>I manually installed OpenJDK, then removed Oracle JDK, then re-ran the <a href="http://github.com/ilri/rmg-ansible-public">Ansible playbook</a> to update all configuration files, etc</li>
<li>Then I ran all system updates and restarted the server</li>
</ul>
<h2 id="2018-12-02">2018-12-02</h2>
<ul>
<li>I noticed that there is another issue with PDF thumbnails on CGSpace, and I see there was another <a href="https://usn.ubuntu.com/3831-1/">Ghostscript vulnerability last week</a></li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2018-12/'>Read more →</a>
</article>
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2018-11/">November, 2018</a></h2>
@ -351,31 +381,6 @@ sys 2m7.289s
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2018-02/">February, 2018</a></h2>
<p class="blog-post-meta"><time datetime="2018-02-01T16:28:54&#43;02:00">Thu Feb 01, 2018</time> by Alan Orth in
<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
</p>
</header>
<h2 id="2018-02-01">2018-02-01</h2>
<ul>
<li>Peter gave feedback on the <code>dc.rights</code> proof of concept that I had sent him last week</li>
<li>We don&rsquo;t need to distinguish between internal and external works, so that makes it just a simple list</li>
<li>Yesterday I figured out how to monitor DSpace sessions using JMX</li>
<li>I copied the logic in the <code>jmx_tomcat_dbpools</code> provided by Ubuntu&rsquo;s <code>munin-plugins-java</code> package and used the stuff I discovered about JMX <a href="/cgspace-notes/2018-01/">in 2018-01</a></li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2018-02/'>Read more →</a>
</article>
<nav class="blog-pagination">
@ -400,6 +405,8 @@ sys 2m7.289s
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2018-12/">December, 2018</a></li>
<li><a href="/cgspace-notes/2018-11/">November, 2018</a></li>
<li><a href="/cgspace-notes/2018-10/">October, 2018</a></li>
@ -408,8 +415,6 @@ sys 2m7.289s
<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
</ol>
</section>

23
docs/index.xml
View File

@ -6,11 +6,32 @@
<description>Recent content on CGSpace Notes</description>
<generator>Hugo -- gohugo.io</generator>
<language>en-us</language>
<lastBuildDate>Thu, 01 Nov 2018 16:41:30 +0200</lastBuildDate>
<lastBuildDate>Sun, 02 Dec 2018 02:09:30 +0200</lastBuildDate>
<atom:link href="https://alanorth.github.io/cgspace-notes/index.xml" rel="self" type="application/rss+xml" />
<item>
<title>December, 2018</title>
<link>https://alanorth.github.io/cgspace-notes/2018-12/</link>
<pubDate>Sun, 02 Dec 2018 02:09:30 +0200</pubDate>
<guid>https://alanorth.github.io/cgspace-notes/2018-12/</guid>
<description>&lt;h2 id=&#34;2018-12-01&#34;&gt;2018-12-01&lt;/h2&gt;
&lt;ul&gt;
&lt;li&gt;Switch CGSpace (linode18) to use OpenJDK instead of Oracle JDK&lt;/li&gt;
&lt;li&gt;I manually installed OpenJDK, then removed Oracle JDK, then re-ran the &lt;a href=&#34;http://github.com/ilri/rmg-ansible-public&#34;&gt;Ansible playbook&lt;/a&gt; to update all configuration files, etc&lt;/li&gt;
&lt;li&gt;Then I ran all system updates and restarted the server&lt;/li&gt;
&lt;/ul&gt;
&lt;h2 id=&#34;2018-12-02&#34;&gt;2018-12-02&lt;/h2&gt;
&lt;ul&gt;
&lt;li&gt;I noticed that there is another issue with PDF thumbnails on CGSpace, and I see there was another &lt;a href=&#34;https://usn.ubuntu.com/3831-1/&#34;&gt;Ghostscript vulnerability last week&lt;/a&gt;&lt;/li&gt;
&lt;/ul&gt;</description>
</item>
<item>
<title>November, 2018</title>
<link>https://alanorth.github.io/cgspace-notes/2018-11/</link>

53
docs/page/2/index.html
View File

@ -9,12 +9,12 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />
<meta property="og:updated_time" content="2018-01-02T08:35:54-08:00"/>
<meta property="og:updated_time" content="2018-02-01T16:28:54&#43;02:00"/>
<meta name="twitter:card" content="summary"/>
<meta name="twitter:title" content="CGSpace Notes"/>
<meta name="twitter:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."/>
<meta name="generator" content="Hugo 0.51" />
<meta name="generator" content="Hugo 0.52" />
@ -28,7 +28,7 @@
"@type": "Person",
"name": "Alan Orth"
},
"dateModified": "2018-01-02T08:35:54-08:00",
"dateModified": "2018-02-01T16:28:54&#43;02:00",
"keywords": "notes,notes,",
"description": "Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
}
@ -89,6 +89,31 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2018-02/">February, 2018</a></h2>
<p class="blog-post-meta"><time datetime="2018-02-01T16:28:54&#43;02:00">Thu Feb 01, 2018</time> by Alan Orth in
<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
</p>
</header>
<h2 id="2018-02-01">2018-02-01</h2>
<ul>
<li>Peter gave feedback on the <code>dc.rights</code> proof of concept that I had sent him last week</li>
<li>We don&rsquo;t need to distinguish between internal and external works, so that makes it just a simple list</li>
<li>Yesterday I figured out how to monitor DSpace sessions using JMX</li>
<li>I copied the logic in the <code>jmx_tomcat_dbpools</code> provided by Ubuntu&rsquo;s <code>munin-plugins-java</code> package and used the stuff I discovered about JMX <a href="/cgspace-notes/2018-01/">in 2018-01</a></li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2018-02/'>Read more →</a>
</article>
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2018-01/">January, 2018</a></h2>
@ -411,24 +436,6 @@ COPY 54701
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2017-05/">May, 2017</a></h2>
<p class="blog-post-meta"><time datetime="2017-05-01T16:21:52&#43;02:00">Mon May 01, 2017</time> by Alan Orth in
<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
</p>
</header>
2017-05-01 ICARDA apparently started working on CG Core on their MEL repository They have done a few cg.* fields, but not very consistent and even copy some of CGSpace items: https://mel.cgiar.org/xmlui/handle/20.500.11766/6911?show=full https://cgspace.cgiar.org/handle/10568/73683 2017-05-02 Atmire got back about the Workflow Statistics issue, and apparently it&rsquo;s a bug in the CUA module so they will send us a pull request 2017-05-04 Sync DSpace Test with database and assetstore from CGSpace Re-deploy DSpace Test with Atmire&rsquo;s CUA patch for workflow statistics, run system updates, and restart the server Now I can see the workflow statistics and am able to select users, but everything returns 0 items Megan says there are still some mapped items are not appearing since last week, so I forced a full index-discovery -b Need to remember to check if the collection has more items (currently 39 on CGSpace, but 118 on the freshly reindexed DSPace Test) tomorrow: https://cgspace.
<a href='https://alanorth.github.io/cgspace-notes/2017-05/'>Read more →</a>
</article>
<nav class="blog-pagination">
<a class="btn btn-outline-primary" href="/cgspace-notes/" rel="prev" role="button">Previous page</a>
@ -453,6 +460,8 @@ COPY 54701
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2018-12/">December, 2018</a></li>
<li><a href="/cgspace-notes/2018-11/">November, 2018</a></li>
<li><a href="/cgspace-notes/2018-10/">October, 2018</a></li>
@ -461,8 +470,6 @@ COPY 54701
<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
</ol>
</section>

63
docs/page/3/index.html
View File

@ -9,12 +9,12 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />
<meta property="og:updated_time" content="2017-04-02T17:08:52&#43;02:00"/>
<meta property="og:updated_time" content="2017-05-01T16:21:52&#43;02:00"/>
<meta name="twitter:card" content="summary"/>
<meta name="twitter:title" content="CGSpace Notes"/>
<meta name="twitter:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."/>
<meta name="generator" content="Hugo 0.51" />
<meta name="generator" content="Hugo 0.52" />
@ -28,7 +28,7 @@
"@type": "Person",
"name": "Alan Orth"
},
"dateModified": "2017-04-02T17:08:52&#43;02:00",
"dateModified": "2017-05-01T16:21:52&#43;02:00",
"keywords": "notes,notes,",
"description": "Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
}
@ -89,6 +89,24 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2017-05/">May, 2017</a></h2>
<p class="blog-post-meta"><time datetime="2017-05-01T16:21:52&#43;02:00">Mon May 01, 2017</time> by Alan Orth in
<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
</p>
</header>
2017-05-01 ICARDA apparently started working on CG Core on their MEL repository They have done a few cg.* fields, but not very consistent and even copy some of CGSpace items: https://mel.cgiar.org/xmlui/handle/20.500.11766/6911?show=full https://cgspace.cgiar.org/handle/10568/73683 2017-05-02 Atmire got back about the Workflow Statistics issue, and apparently it&rsquo;s a bug in the CUA module so they will send us a pull request 2017-05-04 Sync DSpace Test with database and assetstore from CGSpace Re-deploy DSpace Test with Atmire&rsquo;s CUA patch for workflow statistics, run system updates, and restart the server Now I can see the workflow statistics and am able to select users, but everything returns 0 items Megan says there are still some mapped items are not appearing since last week, so I forced a full index-discovery -b Need to remember to check if the collection has more items (currently 39 on CGSpace, but 118 on the freshly reindexed DSPace Test) tomorrow: https://cgspace.
<a href='https://alanorth.github.io/cgspace-notes/2017-05/'>Read more →</a>
</article>
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2017-04/">April, 2017</a></h2>
@ -375,41 +393,6 @@ $ git rebase -i dspace-5.5
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-07/">July, 2016</a></h2>
<p class="blog-post-meta"><time datetime="2016-07-01T10:53:00&#43;03:00">Fri Jul 01, 2016</time> by Alan Orth in
<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
</p>
</header>
<h2 id="2016-07-01">2016-07-01</h2>
<ul>
<li>Add <code>dc.description.sponsorship</code> to Discovery sidebar facets and make investors clickable in item view (<a href="https://github.com/ilri/DSpace/issues/232">#232</a>)</li>
<li>I think this query should find and replace all authors that have &ldquo;,&rdquo; at the end of their names:</li>
</ul>
<pre><code>dspacetest=# update metadatavalue set text_value = regexp_replace(text_value, '(^.+?),$', '\1') where metadata_field_id=3 and resource_type_id=2 and text_value ~ '^.+?,$';
UPDATE 95
dspacetest=# select text_value from metadatavalue where metadata_field_id=3 and resource_type_id=2 and text_value ~ '^.+?,$';
text_value
------------
(0 rows)
</code></pre>
<ul>
<li>In this case the select query was showing 95 results before the update</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2016-07/'>Read more →</a>
</article>
<nav class="blog-pagination">
<a class="btn btn-outline-primary" href="/cgspace-notes/page/2/" rel="prev" role="button">Previous page</a>
@ -434,6 +417,8 @@ dspacetest=# select text_value from metadatavalue where metadata_field_id=3 and
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2018-12/">December, 2018</a></li>
<li><a href="/cgspace-notes/2018-11/">November, 2018</a></li>
<li><a href="/cgspace-notes/2018-10/">October, 2018</a></li>
@ -442,8 +427,6 @@ dspacetest=# select text_value from metadatavalue where metadata_field_id=3 and
<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
</ol>
</section>

47
docs/page/4/index.html
View File

@ -9,12 +9,12 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />
<meta property="og:updated_time" content="2016-06-01T10:53:00&#43;03:00"/>
<meta property="og:updated_time" content="2016-07-01T10:53:00&#43;03:00"/>
<meta name="twitter:card" content="summary"/>
<meta name="twitter:title" content="CGSpace Notes"/>
<meta name="twitter:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."/>
<meta name="generator" content="Hugo 0.51" />
<meta name="generator" content="Hugo 0.52" />
@ -28,7 +28,7 @@
"@type": "Person",
"name": "Alan Orth"
},
"dateModified": "2016-06-01T10:53:00&#43;03:00",
"dateModified": "2016-07-01T10:53:00&#43;03:00",
"keywords": "notes,notes,",
"description": "Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
}
@ -89,6 +89,41 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-07/">July, 2016</a></h2>
<p class="blog-post-meta"><time datetime="2016-07-01T10:53:00&#43;03:00">Fri Jul 01, 2016</time> by Alan Orth in
<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
</p>
</header>
<h2 id="2016-07-01">2016-07-01</h2>
<ul>
<li>Add <code>dc.description.sponsorship</code> to Discovery sidebar facets and make investors clickable in item view (<a href="https://github.com/ilri/DSpace/issues/232">#232</a>)</li>
<li>I think this query should find and replace all authors that have &ldquo;,&rdquo; at the end of their names:</li>
</ul>
<pre><code>dspacetest=# update metadatavalue set text_value = regexp_replace(text_value, '(^.+?),$', '\1') where metadata_field_id=3 and resource_type_id=2 and text_value ~ '^.+?,$';
UPDATE 95
dspacetest=# select text_value from metadatavalue where metadata_field_id=3 and resource_type_id=2 and text_value ~ '^.+?,$';
text_value
------------
(0 rows)
</code></pre>
<ul>
<li>In this case the select query was showing 95 results before the update</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2016-07/'>Read more →</a>
</article>
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-06/">June, 2016</a></h2>
@ -309,7 +344,7 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/posts/">Posts</a></h2>
<p class="blog-post-meta"><time datetime="2018-11-01T16:41:30&#43;02:00">Thu Nov 01, 2018</time> by Alan Orth</p>
<p class="blog-post-meta"><time datetime="2018-12-02T02:09:30&#43;02:00">Sun Dec 02, 2018</time> by Alan Orth</p>
</header>
<a href='https://alanorth.github.io/cgspace-notes/posts/'>Read more →</a>
@ -343,6 +378,8 @@
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2018-12/">December, 2018</a></li>
<li><a href="/cgspace-notes/2018-11/">November, 2018</a></li>
<li><a href="/cgspace-notes/2018-10/">October, 2018</a></li>
@ -351,8 +388,6 @@
<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
</ol>
</section>

65
docs/posts/index.html
View File

@ -9,12 +9,12 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" />
<meta property="og:updated_time" content="2018-11-01T16:41:30&#43;02:00"/>
<meta property="og:updated_time" content="2018-12-02T02:09:30&#43;02:00"/>
<meta name="twitter:card" content="summary"/>
<meta name="twitter:title" content="Posts"/>
<meta name="twitter:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."/>
<meta name="generator" content="Hugo 0.51" />
<meta name="generator" content="Hugo 0.52" />
@ -28,7 +28,7 @@
"@type": "Person",
"name": "Alan Orth"
},
"dateModified": "2018-11-01T16:41:30&#43;02:00",
"dateModified": "2018-12-02T02:09:30&#43;02:00",
"keywords": "notes,notes,",
"description": "Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
}
@ -89,6 +89,36 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2018-12/">December, 2018</a></h2>
<p class="blog-post-meta"><time datetime="2018-12-02T02:09:30&#43;02:00">Sun Dec 02, 2018</time> by Alan Orth in
<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
</p>
</header>
<h2 id="2018-12-01">2018-12-01</h2>
<ul>
<li>Switch CGSpace (linode18) to use OpenJDK instead of Oracle JDK</li>
<li>I manually installed OpenJDK, then removed Oracle JDK, then re-ran the <a href="http://github.com/ilri/rmg-ansible-public">Ansible playbook</a> to update all configuration files, etc</li>
<li>Then I ran all system updates and restarted the server</li>
</ul>
<h2 id="2018-12-02">2018-12-02</h2>
<ul>
<li>I noticed that there is another issue with PDF thumbnails on CGSpace, and I see there was another <a href="https://usn.ubuntu.com/3831-1/">Ghostscript vulnerability last week</a></li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2018-12/'>Read more →</a>
</article>
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2018-11/">November, 2018</a></h2>
@ -351,31 +381,6 @@ sys 2m7.289s
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2018-02/">February, 2018</a></h2>
<p class="blog-post-meta"><time datetime="2018-02-01T16:28:54&#43;02:00">Thu Feb 01, 2018</time> by Alan Orth in
<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
</p>
</header>
<h2 id="2018-02-01">2018-02-01</h2>
<ul>
<li>Peter gave feedback on the <code>dc.rights</code> proof of concept that I had sent him last week</li>
<li>We don&rsquo;t need to distinguish between internal and external works, so that makes it just a simple list</li>
<li>Yesterday I figured out how to monitor DSpace sessions using JMX</li>
<li>I copied the logic in the <code>jmx_tomcat_dbpools</code> provided by Ubuntu&rsquo;s <code>munin-plugins-java</code> package and used the stuff I discovered about JMX <a href="/cgspace-notes/2018-01/">in 2018-01</a></li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2018-02/'>Read more →</a>
</article>
<nav class="blog-pagination">
@ -400,6 +405,8 @@ sys 2m7.289s
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2018-12/">December, 2018</a></li>
<li><a href="/cgspace-notes/2018-11/">November, 2018</a></li>
<li><a href="/cgspace-notes/2018-10/">October, 2018</a></li>
@ -408,8 +415,6 @@ sys 2m7.289s
<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
</ol>
</section>

23
docs/posts/index.xml
View File

@ -6,11 +6,32 @@
<description>Recent content in Posts on CGSpace Notes</description>
<generator>Hugo -- gohugo.io</generator>
<language>en-us</language>
<lastBuildDate>Thu, 01 Nov 2018 16:41:30 +0200</lastBuildDate>
<lastBuildDate>Sun, 02 Dec 2018 02:09:30 +0200</lastBuildDate>
<atom:link href="https://alanorth.github.io/cgspace-notes/posts/index.xml" rel="self" type="application/rss+xml" />
<item>
<title>December, 2018</title>
<link>https://alanorth.github.io/cgspace-notes/2018-12/</link>
<pubDate>Sun, 02 Dec 2018 02:09:30 +0200</pubDate>
<guid>https://alanorth.github.io/cgspace-notes/2018-12/</guid>
<description>&lt;h2 id=&#34;2018-12-01&#34;&gt;2018-12-01&lt;/h2&gt;
&lt;ul&gt;
&lt;li&gt;Switch CGSpace (linode18) to use OpenJDK instead of Oracle JDK&lt;/li&gt;
&lt;li&gt;I manually installed OpenJDK, then removed Oracle JDK, then re-ran the &lt;a href=&#34;http://github.com/ilri/rmg-ansible-public&#34;&gt;Ansible playbook&lt;/a&gt; to update all configuration files, etc&lt;/li&gt;
&lt;li&gt;Then I ran all system updates and restarted the server&lt;/li&gt;
&lt;/ul&gt;
&lt;h2 id=&#34;2018-12-02&#34;&gt;2018-12-02&lt;/h2&gt;
&lt;ul&gt;
&lt;li&gt;I noticed that there is another issue with PDF thumbnails on CGSpace, and I see there was another &lt;a href=&#34;https://usn.ubuntu.com/3831-1/&#34;&gt;Ghostscript vulnerability last week&lt;/a&gt;&lt;/li&gt;
&lt;/ul&gt;</description>
</item>
<item>
<title>November, 2018</title>
<link>https://alanorth.github.io/cgspace-notes/2018-11/</link>

53
docs/posts/page/2/index.html
View File

@ -9,12 +9,12 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" />
<meta property="og:updated_time" content="2018-01-02T08:35:54-08:00"/>
<meta property="og:updated_time" content="2018-02-01T16:28:54&#43;02:00"/>
<meta name="twitter:card" content="summary"/>
<meta name="twitter:title" content="Posts"/>
<meta name="twitter:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."/>
<meta name="generator" content="Hugo 0.51" />
<meta name="generator" content="Hugo 0.52" />
@ -28,7 +28,7 @@
"@type": "Person",
"name": "Alan Orth"
},
"dateModified": "2018-01-02T08:35:54-08:00",
"dateModified": "2018-02-01T16:28:54&#43;02:00",
"keywords": "notes,notes,",
"description": "Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
}
@ -89,6 +89,31 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2018-02/">February, 2018</a></h2>
<p class="blog-post-meta"><time datetime="2018-02-01T16:28:54&#43;02:00">Thu Feb 01, 2018</time> by Alan Orth in
<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
</p>
</header>
<h2 id="2018-02-01">2018-02-01</h2>
<ul>
<li>Peter gave feedback on the <code>dc.rights</code> proof of concept that I had sent him last week</li>
<li>We don&rsquo;t need to distinguish between internal and external works, so that makes it just a simple list</li>
<li>Yesterday I figured out how to monitor DSpace sessions using JMX</li>
<li>I copied the logic in the <code>jmx_tomcat_dbpools</code> provided by Ubuntu&rsquo;s <code>munin-plugins-java</code> package and used the stuff I discovered about JMX <a href="/cgspace-notes/2018-01/">in 2018-01</a></li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2018-02/'>Read more →</a>
</article>
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2018-01/">January, 2018</a></h2>
@ -411,24 +436,6 @@ COPY 54701
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2017-05/">May, 2017</a></h2>
<p class="blog-post-meta"><time datetime="2017-05-01T16:21:52&#43;02:00">Mon May 01, 2017</time> by Alan Orth in
<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
</p>
</header>
2017-05-01 ICARDA apparently started working on CG Core on their MEL repository They have done a few cg.* fields, but not very consistent and even copy some of CGSpace items: https://mel.cgiar.org/xmlui/handle/20.500.11766/6911?show=full https://cgspace.cgiar.org/handle/10568/73683 2017-05-02 Atmire got back about the Workflow Statistics issue, and apparently it&rsquo;s a bug in the CUA module so they will send us a pull request 2017-05-04 Sync DSpace Test with database and assetstore from CGSpace Re-deploy DSpace Test with Atmire&rsquo;s CUA patch for workflow statistics, run system updates, and restart the server Now I can see the workflow statistics and am able to select users, but everything returns 0 items Megan says there are still some mapped items are not appearing since last week, so I forced a full index-discovery -b Need to remember to check if the collection has more items (currently 39 on CGSpace, but 118 on the freshly reindexed DSPace Test) tomorrow: https://cgspace.
<a href='https://alanorth.github.io/cgspace-notes/2017-05/'>Read more →</a>
</article>
<nav class="blog-pagination">
<a class="btn btn-outline-primary" href="/cgspace-notes/posts/" rel="prev" role="button">Previous page</a>
@ -453,6 +460,8 @@ COPY 54701
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2018-12/">December, 2018</a></li>
<li><a href="/cgspace-notes/2018-11/">November, 2018</a></li>
<li><a href="/cgspace-notes/2018-10/">October, 2018</a></li>
@ -461,8 +470,6 @@ COPY 54701
<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
</ol>
</section>

63
docs/posts/page/3/index.html
View File

@ -9,12 +9,12 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" />
<meta property="og:updated_time" content="2017-04-02T17:08:52&#43;02:00"/>
<meta property="og:updated_time" content="2017-05-01T16:21:52&#43;02:00"/>
<meta name="twitter:card" content="summary"/>
<meta name="twitter:title" content="Posts"/>
<meta name="twitter:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."/>
<meta name="generator" content="Hugo 0.51" />
<meta name="generator" content="Hugo 0.52" />
@ -28,7 +28,7 @@
"@type": "Person",
"name": "Alan Orth"
},
"dateModified": "2017-04-02T17:08:52&#43;02:00",
"dateModified": "2017-05-01T16:21:52&#43;02:00",
"keywords": "notes,notes,",
"description": "Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
}
@ -89,6 +89,24 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2017-05/">May, 2017</a></h2>
<p class="blog-post-meta"><time datetime="2017-05-01T16:21:52&#43;02:00">Mon May 01, 2017</time> by Alan Orth in
<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
</p>
</header>
2017-05-01 ICARDA apparently started working on CG Core on their MEL repository They have done a few cg.* fields, but not very consistent and even copy some of CGSpace items: https://mel.cgiar.org/xmlui/handle/20.500.11766/6911?show=full https://cgspace.cgiar.org/handle/10568/73683 2017-05-02 Atmire got back about the Workflow Statistics issue, and apparently it&rsquo;s a bug in the CUA module so they will send us a pull request 2017-05-04 Sync DSpace Test with database and assetstore from CGSpace Re-deploy DSpace Test with Atmire&rsquo;s CUA patch for workflow statistics, run system updates, and restart the server Now I can see the workflow statistics and am able to select users, but everything returns 0 items Megan says there are still some mapped items are not appearing since last week, so I forced a full index-discovery -b Need to remember to check if the collection has more items (currently 39 on CGSpace, but 118 on the freshly reindexed DSPace Test) tomorrow: https://cgspace.
<a href='https://alanorth.github.io/cgspace-notes/2017-05/'>Read more →</a>
</article>
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2017-04/">April, 2017</a></h2>
@ -375,41 +393,6 @@ $ git rebase -i dspace-5.5
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-07/">July, 2016</a></h2>
<p class="blog-post-meta"><time datetime="2016-07-01T10:53:00&#43;03:00">Fri Jul 01, 2016</time> by Alan Orth in
<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
</p>
</header>
<h2 id="2016-07-01">2016-07-01</h2>
<ul>
<li>Add <code>dc.description.sponsorship</code> to Discovery sidebar facets and make investors clickable in item view (<a href="https://github.com/ilri/DSpace/issues/232">#232</a>)</li>
<li>I think this query should find and replace all authors that have &ldquo;,&rdquo; at the end of their names:</li>
</ul>
<pre><code>dspacetest=# update metadatavalue set text_value = regexp_replace(text_value, '(^.+?),$', '\1') where metadata_field_id=3 and resource_type_id=2 and text_value ~ '^.+?,$';
UPDATE 95
dspacetest=# select text_value from metadatavalue where metadata_field_id=3 and resource_type_id=2 and text_value ~ '^.+?,$';
text_value
------------
(0 rows)
</code></pre>
<ul>
<li>In this case the select query was showing 95 results before the update</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2016-07/'>Read more →</a>
</article>
<nav class="blog-pagination">
<a class="btn btn-outline-primary" href="/cgspace-notes/posts/page/2/" rel="prev" role="button">Previous page</a>
@ -434,6 +417,8 @@ dspacetest=# select text_value from metadatavalue where metadata_field_id=3 and
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2018-12/">December, 2018</a></li>
<li><a href="/cgspace-notes/2018-11/">November, 2018</a></li>
<li><a href="/cgspace-notes/2018-10/">October, 2018</a></li>
@ -442,8 +427,6 @@ dspacetest=# select text_value from metadatavalue where metadata_field_id=3 and
<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
</ol>
</section>

47
docs/posts/page/4/index.html
View File

@ -9,12 +9,12 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" />
<meta property="og:updated_time" content="2016-06-01T10:53:00&#43;03:00"/>
<meta property="og:updated_time" content="2016-07-01T10:53:00&#43;03:00"/>
<meta name="twitter:card" content="summary"/>
<meta name="twitter:title" content="Posts"/>
<meta name="twitter:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."/>
<meta name="generator" content="Hugo 0.51" />
<meta name="generator" content="Hugo 0.52" />
@ -28,7 +28,7 @@
"@type": "Person",
"name": "Alan Orth"
},
"dateModified": "2016-06-01T10:53:00&#43;03:00",
"dateModified": "2016-07-01T10:53:00&#43;03:00",
"keywords": "notes,notes,",
"description": "Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
}
@ -89,6 +89,41 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-07/">July, 2016</a></h2>
<p class="blog-post-meta"><time datetime="2016-07-01T10:53:00&#43;03:00">Fri Jul 01, 2016</time> by Alan Orth in
<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
</p>
</header>
<h2 id="2016-07-01">2016-07-01</h2>
<ul>
<li>Add <code>dc.description.sponsorship</code> to Discovery sidebar facets and make investors clickable in item view (<a href="https://github.com/ilri/DSpace/issues/232">#232</a>)</li>
<li>I think this query should find and replace all authors that have &ldquo;,&rdquo; at the end of their names:</li>
</ul>
<pre><code>dspacetest=# update metadatavalue set text_value = regexp_replace(text_value, '(^.+?),$', '\1') where metadata_field_id=3 and resource_type_id=2 and text_value ~ '^.+?,$';
UPDATE 95
dspacetest=# select text_value from metadatavalue where metadata_field_id=3 and resource_type_id=2 and text_value ~ '^.+?,$';
text_value
------------
(0 rows)
</code></pre>
<ul>
<li>In this case the select query was showing 95 results before the update</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2016-07/'>Read more →</a>
</article>
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-06/">June, 2016</a></h2>
@ -309,7 +344,7 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/posts/">Posts</a></h2>
<p class="blog-post-meta"><time datetime="2018-11-01T16:41:30&#43;02:00">Thu Nov 01, 2018</time> by Alan Orth</p>
<p class="blog-post-meta"><time datetime="2018-12-02T02:09:30&#43;02:00">Sun Dec 02, 2018</time> by Alan Orth</p>
</header>
<a href='https://alanorth.github.io/cgspace-notes/posts/'>Read more →</a>
@ -343,6 +378,8 @@
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2018-12/">December, 2018</a></li>
<li><a href="/cgspace-notes/2018-11/">November, 2018</a></li>
<li><a href="/cgspace-notes/2018-10/">October, 2018</a></li>
@ -351,8 +388,6 @@
<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
</ol>
</section>

1
docs/robots.txt
View File

@ -1,6 +1,7 @@
User-agent: *
Disallow: /cgspace-notes/2018-12/
Disallow: /cgspace-notes/2018-11/
Disallow: /cgspace-notes/2018-10/
Disallow: /cgspace-notes/2018-09/

15
docs/sitemap.xml
View File

@ -2,9 +2,14 @@
<urlset xmlns="http://www.sitemaps.org/schemas/sitemap/0.9"
xmlns:xhtml="http://www.w3.org/1999/xhtml">
<url>
<loc>https://alanorth.github.io/cgspace-notes/2018-12/</loc>
<lastmod>2018-12-02T02:09:30+02:00</lastmod>
</url>
<url>
<loc>https://alanorth.github.io/cgspace-notes/2018-11/</loc>
<lastmod>2018-11-28T09:11:39+02:00</lastmod>
<lastmod>2018-11-28T09:32:04+02:00</lastmod>
</url>
<url>
@ -194,7 +199,7 @@
<url>
<loc>https://alanorth.github.io/cgspace-notes/</loc>
<lastmod>2018-11-28T09:11:39+02:00</lastmod>
<lastmod>2018-12-02T02:09:30+02:00</lastmod>
<priority>0</priority>
</url>
@ -205,7 +210,7 @@
<url>
<loc>https://alanorth.github.io/cgspace-notes/tags/notes/</loc>
<lastmod>2018-11-28T09:11:39+02:00</lastmod>
<lastmod>2018-12-02T02:09:30+02:00</lastmod>
<priority>0</priority>
</url>
@ -217,13 +222,13 @@
<url>
<loc>https://alanorth.github.io/cgspace-notes/posts/</loc>
<lastmod>2018-11-28T09:11:39+02:00</lastmod>
<lastmod>2018-12-02T02:09:30+02:00</lastmod>
<priority>0</priority>
</url>
<url>
<loc>https://alanorth.github.io/cgspace-notes/tags/</loc>
<lastmod>2018-11-28T09:11:39+02:00</lastmod>
<lastmod>2018-12-02T02:09:30+02:00</lastmod>
<priority>0</priority>
</url>

65
docs/tags/index.html
View File

@ -9,12 +9,12 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/tags/" />
<meta property="og:updated_time" content="2018-11-01T16:41:30&#43;02:00"/>
<meta property="og:updated_time" content="2018-12-02T02:09:30&#43;02:00"/>
<meta name="twitter:card" content="summary"/>
<meta name="twitter:title" content="Tags"/>
<meta name="twitter:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."/>
<meta name="generator" content="Hugo 0.51" />
<meta name="generator" content="Hugo 0.52" />
@ -28,7 +28,7 @@
"@type": "Person",
"name": "Alan Orth"
},
"dateModified": "2018-11-01T16:41:30&#43;02:00",
"dateModified": "2018-12-02T02:09:30&#43;02:00",
"keywords": "notes,notes,",
"description": "Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
}
@ -89,6 +89,36 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2018-12/">December, 2018</a></h2>
<p class="blog-post-meta"><time datetime="2018-12-02T02:09:30&#43;02:00">Sun Dec 02, 2018</time> by Alan Orth in
<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
</p>
</header>
<h2 id="2018-12-01">2018-12-01</h2>
<ul>
<li>Switch CGSpace (linode18) to use OpenJDK instead of Oracle JDK</li>
<li>I manually installed OpenJDK, then removed Oracle JDK, then re-ran the <a href="http://github.com/ilri/rmg-ansible-public">Ansible playbook</a> to update all configuration files, etc</li>
<li>Then I ran all system updates and restarted the server</li>
</ul>
<h2 id="2018-12-02">2018-12-02</h2>
<ul>
<li>I noticed that there is another issue with PDF thumbnails on CGSpace, and I see there was another <a href="https://usn.ubuntu.com/3831-1/">Ghostscript vulnerability last week</a></li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2018-12/'>Read more →</a>
</article>
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2018-11/">November, 2018</a></h2>
@ -351,31 +381,6 @@ sys 2m7.289s
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2018-02/">February, 2018</a></h2>
<p class="blog-post-meta"><time datetime="2018-02-01T16:28:54&#43;02:00">Thu Feb 01, 2018</time> by Alan Orth in
<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
</p>
</header>
<h2 id="2018-02-01">2018-02-01</h2>
<ul>
<li>Peter gave feedback on the <code>dc.rights</code> proof of concept that I had sent him last week</li>
<li>We don&rsquo;t need to distinguish between internal and external works, so that makes it just a simple list</li>
<li>Yesterday I figured out how to monitor DSpace sessions using JMX</li>
<li>I copied the logic in the <code>jmx_tomcat_dbpools</code> provided by Ubuntu&rsquo;s <code>munin-plugins-java</code> package and used the stuff I discovered about JMX <a href="/cgspace-notes/2018-01/">in 2018-01</a></li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2018-02/'>Read more →</a>
</article>
<nav class="blog-pagination">
@ -400,6 +405,8 @@ sys 2m7.289s
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2018-12/">December, 2018</a></li>
<li><a href="/cgspace-notes/2018-11/">November, 2018</a></li>
<li><a href="/cgspace-notes/2018-10/">October, 2018</a></li>
@ -408,8 +415,6 @@ sys 2m7.289s
<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
</ol>
</section>

4
docs/tags/index.xml
View File

@ -6,7 +6,7 @@
<description>Recent content in Tags on CGSpace Notes</description>
<generator>Hugo -- gohugo.io</generator>
<language>en-us</language>
<lastBuildDate>Thu, 01 Nov 2018 16:41:30 +0200</lastBuildDate>
<lastBuildDate>Sun, 02 Dec 2018 02:09:30 +0200</lastBuildDate>
<atom:link href="https://alanorth.github.io/cgspace-notes/tags/index.xml" rel="self" type="application/rss+xml" />
@ -14,7 +14,7 @@
<item>
<title>Notes</title>
<link>https://alanorth.github.io/cgspace-notes/tags/notes/</link>
<pubDate>Thu, 01 Nov 2018 16:41:30 +0200</pubDate>
<pubDate>Sun, 02 Dec 2018 02:09:30 +0200</pubDate>
<guid>https://alanorth.github.io/cgspace-notes/tags/notes/</guid>
<description></description>

63
docs/tags/notes/index.html
View File

@ -9,12 +9,12 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/tags/notes/" />
<meta property="og:updated_time" content="2018-11-01T16:41:30&#43;02:00"/>
<meta property="og:updated_time" content="2018-12-02T02:09:30&#43;02:00"/>
<meta name="twitter:card" content="summary"/>
<meta name="twitter:title" content="Notes"/>
<meta name="twitter:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."/>
<meta name="generator" content="Hugo 0.51" />
<meta name="generator" content="Hugo 0.52" />
@ -74,6 +74,36 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2018-12/">December, 2018</a></h2>
<p class="blog-post-meta"><time datetime="2018-12-02T02:09:30&#43;02:00">Sun Dec 02, 2018</time> by Alan Orth in
<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
</p>
</header>
<h2 id="2018-12-01">2018-12-01</h2>
<ul>
<li>Switch CGSpace (linode18) to use OpenJDK instead of Oracle JDK</li>
<li>I manually installed OpenJDK, then removed Oracle JDK, then re-ran the <a href="http://github.com/ilri/rmg-ansible-public">Ansible playbook</a> to update all configuration files, etc</li>
<li>Then I ran all system updates and restarted the server</li>
</ul>
<h2 id="2018-12-02">2018-12-02</h2>
<ul>
<li>I noticed that there is another issue with PDF thumbnails on CGSpace, and I see there was another <a href="https://usn.ubuntu.com/3831-1/">Ghostscript vulnerability last week</a></li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2018-12/'>Read more →</a>
</article>
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2018-11/">November, 2018</a></h2>
@ -336,31 +366,6 @@ sys 2m7.289s
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2018-02/">February, 2018</a></h2>
<p class="blog-post-meta"><time datetime="2018-02-01T16:28:54&#43;02:00">Thu Feb 01, 2018</time> by Alan Orth in
<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
</p>
</header>
<h2 id="2018-02-01">2018-02-01</h2>
<ul>
<li>Peter gave feedback on the <code>dc.rights</code> proof of concept that I had sent him last week</li>
<li>We don&rsquo;t need to distinguish between internal and external works, so that makes it just a simple list</li>
<li>Yesterday I figured out how to monitor DSpace sessions using JMX</li>
<li>I copied the logic in the <code>jmx_tomcat_dbpools</code> provided by Ubuntu&rsquo;s <code>munin-plugins-java</code> package and used the stuff I discovered about JMX <a href="/cgspace-notes/2018-01/">in 2018-01</a></li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2018-02/'>Read more →</a>
</article>
<nav class="blog-pagination">
@ -385,6 +390,8 @@ sys 2m7.289s
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2018-12/">December, 2018</a></li>
<li><a href="/cgspace-notes/2018-11/">November, 2018</a></li>
<li><a href="/cgspace-notes/2018-10/">October, 2018</a></li>
@ -393,8 +400,6 @@ sys 2m7.289s
<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
</ol>
</section>

23
docs/tags/notes/index.xml
View File

@ -6,11 +6,32 @@
<description>Recent content in Notes on CGSpace Notes</description>
<generator>Hugo -- gohugo.io</generator>
<language>en-us</language>
<lastBuildDate>Thu, 01 Nov 2018 16:41:30 +0200</lastBuildDate>
<lastBuildDate>Sun, 02 Dec 2018 02:09:30 +0200</lastBuildDate>
<atom:link href="https://alanorth.github.io/cgspace-notes/tags/notes/index.xml" rel="self" type="application/rss+xml" />
<item>
<title>December, 2018</title>
<link>https://alanorth.github.io/cgspace-notes/2018-12/</link>
<pubDate>Sun, 02 Dec 2018 02:09:30 +0200</pubDate>
<guid>https://alanorth.github.io/cgspace-notes/2018-12/</guid>
<description>&lt;h2 id=&#34;2018-12-01&#34;&gt;2018-12-01&lt;/h2&gt;
&lt;ul&gt;
&lt;li&gt;Switch CGSpace (linode18) to use OpenJDK instead of Oracle JDK&lt;/li&gt;
&lt;li&gt;I manually installed OpenJDK, then removed Oracle JDK, then re-ran the &lt;a href=&#34;http://github.com/ilri/rmg-ansible-public&#34;&gt;Ansible playbook&lt;/a&gt; to update all configuration files, etc&lt;/li&gt;
&lt;li&gt;Then I ran all system updates and restarted the server&lt;/li&gt;
&lt;/ul&gt;
&lt;h2 id=&#34;2018-12-02&#34;&gt;2018-12-02&lt;/h2&gt;
&lt;ul&gt;
&lt;li&gt;I noticed that there is another issue with PDF thumbnails on CGSpace, and I see there was another &lt;a href=&#34;https://usn.ubuntu.com/3831-1/&#34;&gt;Ghostscript vulnerability last week&lt;/a&gt;&lt;/li&gt;
&lt;/ul&gt;</description>
</item>
<item>
<title>November, 2018</title>
<link>https://alanorth.github.io/cgspace-notes/2018-11/</link>

66
docs/tags/notes/page/2/index.html
View File

@ -9,12 +9,12 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/tags/notes/" />
<meta property="og:updated_time" content="2018-01-02T08:35:54-08:00"/>
<meta property="og:updated_time" content="2018-02-01T16:28:54&#43;02:00"/>
<meta name="twitter:card" content="summary"/>
<meta name="twitter:title" content="Notes"/>
<meta name="twitter:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."/>
<meta name="generator" content="Hugo 0.51" />
<meta name="generator" content="Hugo 0.52" />
@ -74,6 +74,31 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2018-02/">February, 2018</a></h2>
<p class="blog-post-meta"><time datetime="2018-02-01T16:28:54&#43;02:00">Thu Feb 01, 2018</time> by Alan Orth in
<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
</p>
</header>
<h2 id="2018-02-01">2018-02-01</h2>
<ul>
<li>Peter gave feedback on the <code>dc.rights</code> proof of concept that I had sent him last week</li>
<li>We don&rsquo;t need to distinguish between internal and external works, so that makes it just a simple list</li>
<li>Yesterday I figured out how to monitor DSpace sessions using JMX</li>
<li>I copied the logic in the <code>jmx_tomcat_dbpools</code> provided by Ubuntu&rsquo;s <code>munin-plugins-java</code> package and used the stuff I discovered about JMX <a href="/cgspace-notes/2018-01/">in 2018-01</a></li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2018-02/'>Read more →</a>
</article>
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2018-01/">January, 2018</a></h2>
@ -396,39 +421,6 @@ COPY 54701
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2017-04/">April, 2017</a></h2>
<p class="blog-post-meta"><time datetime="2017-04-02T17:08:52&#43;02:00">Sun Apr 02, 2017</time> by Alan Orth in
<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
</p>
</header>
<h2 id="2017-04-02">2017-04-02</h2>
<ul>
<li>Merge one change to CCAFS flagships that I had forgotten to remove last month (&ldquo;MANAGING CLIMATE RISK&rdquo;): <a href="https://github.com/ilri/DSpace/pull/317">https://github.com/ilri/DSpace/pull/317</a></li>
<li>Quick proof-of-concept hack to add <code>dc.rights</code> to the input form, including some inline instructions/hints:</li>
</ul>
<p><img src="/cgspace-notes/2017/04/dc-rights.png" alt="dc.rights in the submission form" /></p>
<ul>
<li>Remove redundant/duplicate text in the DSpace submission license</li>
<li>Testing the CMYK patch on a collection with 650 items:</li>
</ul>
<pre><code>$ [dspace]/bin/dspace filter-media -f -i 10568/16498 -p &quot;ImageMagick PDF Thumbnail&quot; -v &gt;&amp; /tmp/filter-media-cmyk.txt
</code></pre>
<a href='https://alanorth.github.io/cgspace-notes/2017-04/'>Read more →</a>
</article>
<nav class="blog-pagination">
<a class="btn btn-outline-primary" href="/cgspace-notes/tags/notes/" rel="prev" role="button">Previous page</a>
@ -453,6 +445,8 @@ COPY 54701
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2018-12/">December, 2018</a></li>
<li><a href="/cgspace-notes/2018-11/">November, 2018</a></li>
<li><a href="/cgspace-notes/2018-10/">October, 2018</a></li>
@ -461,8 +455,6 @@ COPY 54701
<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
</ol>
</section>

68
docs/tags/notes/page/3/index.html
View File

@ -9,12 +9,12 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/tags/notes/" />
<meta property="og:updated_time" content="2017-03-01T17:08:52&#43;02:00"/>
<meta property="og:updated_time" content="2017-04-02T17:08:52&#43;02:00"/>
<meta name="twitter:card" content="summary"/>
<meta name="twitter:title" content="Notes"/>
<meta name="twitter:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."/>
<meta name="generator" content="Hugo 0.51" />
<meta name="generator" content="Hugo 0.52" />
@ -74,6 +74,39 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2017-04/">April, 2017</a></h2>
<p class="blog-post-meta"><time datetime="2017-04-02T17:08:52&#43;02:00">Sun Apr 02, 2017</time> by Alan Orth in
<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
</p>
</header>
<h2 id="2017-04-02">2017-04-02</h2>
<ul>
<li>Merge one change to CCAFS flagships that I had forgotten to remove last month (&ldquo;MANAGING CLIMATE RISK&rdquo;): <a href="https://github.com/ilri/DSpace/pull/317">https://github.com/ilri/DSpace/pull/317</a></li>
<li>Quick proof-of-concept hack to add <code>dc.rights</code> to the input form, including some inline instructions/hints:</li>
</ul>
<p><img src="/cgspace-notes/2017/04/dc-rights.png" alt="dc.rights in the submission form" /></p>
<ul>
<li>Remove redundant/duplicate text in the DSpace submission license</li>
<li>Testing the CMYK patch on a collection with 650 items:</li>
</ul>
<pre><code>$ [dspace]/bin/dspace filter-media -f -i 10568/16498 -p &quot;ImageMagick PDF Thumbnail&quot; -v &gt;&amp; /tmp/filter-media-cmyk.txt
</code></pre>
<a href='https://alanorth.github.io/cgspace-notes/2017-04/'>Read more →</a>
</article>
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2017-03/">March, 2017</a></h2>
@ -362,33 +395,6 @@ dspacetest=# select text_value from metadatavalue where metadata_field_id=3 and
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-06/">June, 2016</a></h2>
<p class="blog-post-meta"><time datetime="2016-06-01T10:53:00&#43;03:00">Wed Jun 01, 2016</time> by Alan Orth in
<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
</p>
</header>
<h2 id="2016-06-01">2016-06-01</h2>
<ul>
<li>Experimenting with IFPRI OAI (we want to harvest their publications)</li>
<li>After reading the <a href="https://www.oclc.org/support/services/contentdm/help/server-admin-help/oai-support.en.html">ContentDM documentation</a> I found IFPRI&rsquo;s OAI endpoint: <a href="http://ebrary.ifpri.org/oai/oai.php">http://ebrary.ifpri.org/oai/oai.php</a></li>
<li>After reading the <a href="https://www.openarchives.org/OAI/openarchivesprotocol.html">OAI documentation</a> and testing with an <a href="http://validator.oaipmh.com/">OAI validator</a> I found out how to get their publications</li>
<li>This is their publications set: <a href="http://ebrary.ifpri.org/oai/oai.php?verb=ListRecords&amp;from=2016-01-01&amp;set=p15738coll2&amp;metadataPrefix=oai_dc">http://ebrary.ifpri.org/oai/oai.php?verb=ListRecords&amp;from=2016-01-01&amp;set=p15738coll2&amp;metadataPrefix=oai_dc</a></li>
<li>You can see the others by using the OAI <code>ListSets</code> verb: <a href="http://ebrary.ifpri.org/oai/oai.php?verb=ListSets">http://ebrary.ifpri.org/oai/oai.php?verb=ListSets</a></li>
<li>Working on second phase of metadata migration, looks like this will work for moving CPWF-specific data in <code>dc.identifier.fund</code> to <code>cg.identifier.cpwfproject</code> and then the rest to <code>dc.description.sponsorship</code></li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2016-06/'>Read more →</a>
</article>
<nav class="blog-pagination">
<a class="btn btn-outline-primary" href="/cgspace-notes/tags/notes/page/2/" rel="prev" role="button">Previous page</a>
@ -413,6 +419,8 @@ dspacetest=# select text_value from metadatavalue where metadata_field_id=3 and
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2018-12/">December, 2018</a></li>
<li><a href="/cgspace-notes/2018-11/">November, 2018</a></li>
<li><a href="/cgspace-notes/2018-10/">October, 2018</a></li>
@ -421,8 +429,6 @@ dspacetest=# select text_value from metadatavalue where metadata_field_id=3 and
<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
</ol>
</section>

35
docs/tags/notes/page/4/index.html
View File

@ -9,12 +9,12 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/tags/notes/" />
<meta property="og:updated_time" content="2016-05-01T23:06:00&#43;03:00"/>
<meta property="og:updated_time" content="2016-06-01T10:53:00&#43;03:00"/>
<meta name="twitter:card" content="summary"/>
<meta name="twitter:title" content="Notes"/>
<meta name="twitter:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."/>
<meta name="generator" content="Hugo 0.51" />
<meta name="generator" content="Hugo 0.52" />
@ -74,6 +74,33 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-06/">June, 2016</a></h2>
<p class="blog-post-meta"><time datetime="2016-06-01T10:53:00&#43;03:00">Wed Jun 01, 2016</time> by Alan Orth in
<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
</p>
</header>
<h2 id="2016-06-01">2016-06-01</h2>
<ul>
<li>Experimenting with IFPRI OAI (we want to harvest their publications)</li>
<li>After reading the <a href="https://www.oclc.org/support/services/contentdm/help/server-admin-help/oai-support.en.html">ContentDM documentation</a> I found IFPRI&rsquo;s OAI endpoint: <a href="http://ebrary.ifpri.org/oai/oai.php">http://ebrary.ifpri.org/oai/oai.php</a></li>
<li>After reading the <a href="https://www.openarchives.org/OAI/openarchivesprotocol.html">OAI documentation</a> and testing with an <a href="http://validator.oaipmh.com/">OAI validator</a> I found out how to get their publications</li>
<li>This is their publications set: <a href="http://ebrary.ifpri.org/oai/oai.php?verb=ListRecords&amp;from=2016-01-01&amp;set=p15738coll2&amp;metadataPrefix=oai_dc">http://ebrary.ifpri.org/oai/oai.php?verb=ListRecords&amp;from=2016-01-01&amp;set=p15738coll2&amp;metadataPrefix=oai_dc</a></li>
<li>You can see the others by using the OAI <code>ListSets</code> verb: <a href="http://ebrary.ifpri.org/oai/oai.php?verb=ListSets">http://ebrary.ifpri.org/oai/oai.php?verb=ListSets</a></li>
<li>Working on second phase of metadata migration, looks like this will work for moving CPWF-specific data in <code>dc.identifier.fund</code> to <code>cg.identifier.cpwfproject</code> and then the rest to <code>dc.description.sponsorship</code></li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2016-06/'>Read more →</a>
</article>
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-05/">May, 2016</a></h2>
@ -287,6 +314,8 @@
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2018-12/">December, 2018</a></li>
<li><a href="/cgspace-notes/2018-11/">November, 2018</a></li>
<li><a href="/cgspace-notes/2018-10/">October, 2018</a></li>
@ -295,8 +324,6 @@
<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
</ol>
</section>

53
docs/tags/page/2/index.html
View File

@ -9,12 +9,12 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/tags/" />
<meta property="og:updated_time" content="2018-01-02T08:35:54-08:00"/>
<meta property="og:updated_time" content="2018-02-01T16:28:54&#43;02:00"/>
<meta name="twitter:card" content="summary"/>
<meta name="twitter:title" content="Tags"/>
<meta name="twitter:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."/>
<meta name="generator" content="Hugo 0.51" />
<meta name="generator" content="Hugo 0.52" />
@ -28,7 +28,7 @@
"@type": "Person",
"name": "Alan Orth"
},
"dateModified": "2018-01-02T08:35:54-08:00",
"dateModified": "2018-02-01T16:28:54&#43;02:00",
"keywords": "notes,notes,",
"description": "Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
}
@ -89,6 +89,31 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2018-02/">February, 2018</a></h2>
<p class="blog-post-meta"><time datetime="2018-02-01T16:28:54&#43;02:00">Thu Feb 01, 2018</time> by Alan Orth in
<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
</p>
</header>
<h2 id="2018-02-01">2018-02-01</h2>
<ul>
<li>Peter gave feedback on the <code>dc.rights</code> proof of concept that I had sent him last week</li>
<li>We don&rsquo;t need to distinguish between internal and external works, so that makes it just a simple list</li>
<li>Yesterday I figured out how to monitor DSpace sessions using JMX</li>
<li>I copied the logic in the <code>jmx_tomcat_dbpools</code> provided by Ubuntu&rsquo;s <code>munin-plugins-java</code> package and used the stuff I discovered about JMX <a href="/cgspace-notes/2018-01/">in 2018-01</a></li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2018-02/'>Read more →</a>
</article>
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2018-01/">January, 2018</a></h2>
@ -411,24 +436,6 @@ COPY 54701
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2017-05/">May, 2017</a></h2>
<p class="blog-post-meta"><time datetime="2017-05-01T16:21:52&#43;02:00">Mon May 01, 2017</time> by Alan Orth in
<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
</p>
</header>
2017-05-01 ICARDA apparently started working on CG Core on their MEL repository They have done a few cg.* fields, but not very consistent and even copy some of CGSpace items: https://mel.cgiar.org/xmlui/handle/20.500.11766/6911?show=full https://cgspace.cgiar.org/handle/10568/73683 2017-05-02 Atmire got back about the Workflow Statistics issue, and apparently it&rsquo;s a bug in the CUA module so they will send us a pull request 2017-05-04 Sync DSpace Test with database and assetstore from CGSpace Re-deploy DSpace Test with Atmire&rsquo;s CUA patch for workflow statistics, run system updates, and restart the server Now I can see the workflow statistics and am able to select users, but everything returns 0 items Megan says there are still some mapped items are not appearing since last week, so I forced a full index-discovery -b Need to remember to check if the collection has more items (currently 39 on CGSpace, but 118 on the freshly reindexed DSPace Test) tomorrow: https://cgspace.
<a href='https://alanorth.github.io/cgspace-notes/2017-05/'>Read more →</a>
</article>
<nav class="blog-pagination">
<a class="btn btn-outline-primary" href="/cgspace-notes/tags/" rel="prev" role="button">Previous page</a>
@ -453,6 +460,8 @@ COPY 54701
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2018-12/">December, 2018</a></li>
<li><a href="/cgspace-notes/2018-11/">November, 2018</a></li>
<li><a href="/cgspace-notes/2018-10/">October, 2018</a></li>
@ -461,8 +470,6 @@ COPY 54701
<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
</ol>
</section>

63
docs/tags/page/3/index.html
View File

@ -9,12 +9,12 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/tags/" />
<meta property="og:updated_time" content="2017-04-02T17:08:52&#43;02:00"/>
<meta property="og:updated_time" content="2017-05-01T16:21:52&#43;02:00"/>
<meta name="twitter:card" content="summary"/>
<meta name="twitter:title" content="Tags"/>
<meta name="twitter:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."/>
<meta name="generator" content="Hugo 0.51" />
<meta name="generator" content="Hugo 0.52" />
@ -28,7 +28,7 @@
"@type": "Person",
"name": "Alan Orth"
},
"dateModified": "2017-04-02T17:08:52&#43;02:00",
"dateModified": "2017-05-01T16:21:52&#43;02:00",
"keywords": "notes,notes,",
"description": "Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
}
@ -89,6 +89,24 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2017-05/">May, 2017</a></h2>
<p class="blog-post-meta"><time datetime="2017-05-01T16:21:52&#43;02:00">Mon May 01, 2017</time> by Alan Orth in
<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
</p>
</header>
2017-05-01 ICARDA apparently started working on CG Core on their MEL repository They have done a few cg.* fields, but not very consistent and even copy some of CGSpace items: https://mel.cgiar.org/xmlui/handle/20.500.11766/6911?show=full https://cgspace.cgiar.org/handle/10568/73683 2017-05-02 Atmire got back about the Workflow Statistics issue, and apparently it&rsquo;s a bug in the CUA module so they will send us a pull request 2017-05-04 Sync DSpace Test with database and assetstore from CGSpace Re-deploy DSpace Test with Atmire&rsquo;s CUA patch for workflow statistics, run system updates, and restart the server Now I can see the workflow statistics and am able to select users, but everything returns 0 items Megan says there are still some mapped items are not appearing since last week, so I forced a full index-discovery -b Need to remember to check if the collection has more items (currently 39 on CGSpace, but 118 on the freshly reindexed DSPace Test) tomorrow: https://cgspace.
<a href='https://alanorth.github.io/cgspace-notes/2017-05/'>Read more →</a>
</article>
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2017-04/">April, 2017</a></h2>
@ -375,41 +393,6 @@ $ git rebase -i dspace-5.5
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-07/">July, 2016</a></h2>
<p class="blog-post-meta"><time datetime="2016-07-01T10:53:00&#43;03:00">Fri Jul 01, 2016</time> by Alan Orth in
<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
</p>
</header>
<h2 id="2016-07-01">2016-07-01</h2>
<ul>
<li>Add <code>dc.description.sponsorship</code> to Discovery sidebar facets and make investors clickable in item view (<a href="https://github.com/ilri/DSpace/issues/232">#232</a>)</li>
<li>I think this query should find and replace all authors that have &ldquo;,&rdquo; at the end of their names:</li>
</ul>
<pre><code>dspacetest=# update metadatavalue set text_value = regexp_replace(text_value, '(^.+?),$', '\1') where metadata_field_id=3 and resource_type_id=2 and text_value ~ '^.+?,$';
UPDATE 95
dspacetest=# select text_value from metadatavalue where metadata_field_id=3 and resource_type_id=2 and text_value ~ '^.+?,$';
text_value
------------
(0 rows)
</code></pre>
<ul>
<li>In this case the select query was showing 95 results before the update</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2016-07/'>Read more →</a>
</article>
<nav class="blog-pagination">
<a class="btn btn-outline-primary" href="/cgspace-notes/tags/page/2/" rel="prev" role="button">Previous page</a>
@ -434,6 +417,8 @@ dspacetest=# select text_value from metadatavalue where metadata_field_id=3 and
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2018-12/">December, 2018</a></li>
<li><a href="/cgspace-notes/2018-11/">November, 2018</a></li>
<li><a href="/cgspace-notes/2018-10/">October, 2018</a></li>
@ -442,8 +427,6 @@ dspacetest=# select text_value from metadatavalue where metadata_field_id=3 and
<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
</ol>
</section>

47
docs/tags/page/4/index.html
View File

@ -9,12 +9,12 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/tags/" />
<meta property="og:updated_time" content="2016-06-01T10:53:00&#43;03:00"/>
<meta property="og:updated_time" content="2016-07-01T10:53:00&#43;03:00"/>
<meta name="twitter:card" content="summary"/>
<meta name="twitter:title" content="Tags"/>
<meta name="twitter:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."/>
<meta name="generator" content="Hugo 0.51" />
<meta name="generator" content="Hugo 0.52" />
@ -28,7 +28,7 @@
"@type": "Person",
"name": "Alan Orth"
},
"dateModified": "2016-06-01T10:53:00&#43;03:00",
"dateModified": "2016-07-01T10:53:00&#43;03:00",
"keywords": "notes,notes,",
"description": "Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
}
@ -89,6 +89,41 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-07/">July, 2016</a></h2>
<p class="blog-post-meta"><time datetime="2016-07-01T10:53:00&#43;03:00">Fri Jul 01, 2016</time> by Alan Orth in
<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
</p>
</header>
<h2 id="2016-07-01">2016-07-01</h2>
<ul>
<li>Add <code>dc.description.sponsorship</code> to Discovery sidebar facets and make investors clickable in item view (<a href="https://github.com/ilri/DSpace/issues/232">#232</a>)</li>
<li>I think this query should find and replace all authors that have &ldquo;,&rdquo; at the end of their names:</li>
</ul>
<pre><code>dspacetest=# update metadatavalue set text_value = regexp_replace(text_value, '(^.+?),$', '\1') where metadata_field_id=3 and resource_type_id=2 and text_value ~ '^.+?,$';
UPDATE 95
dspacetest=# select text_value from metadatavalue where metadata_field_id=3 and resource_type_id=2 and text_value ~ '^.+?,$';
text_value
------------
(0 rows)
</code></pre>
<ul>
<li>In this case the select query was showing 95 results before the update</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2016-07/'>Read more →</a>
</article>
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-06/">June, 2016</a></h2>
@ -309,7 +344,7 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/posts/">Posts</a></h2>
<p class="blog-post-meta"><time datetime="2018-11-01T16:41:30&#43;02:00">Thu Nov 01, 2018</time> by Alan Orth</p>
<p class="blog-post-meta"><time datetime="2018-12-02T02:09:30&#43;02:00">Sun Dec 02, 2018</time> by Alan Orth</p>
</header>
<a href='https://alanorth.github.io/cgspace-notes/posts/'>Read more →</a>
@ -343,6 +378,8 @@
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2018-12/">December, 2018</a></li>
<li><a href="/cgspace-notes/2018-11/">November, 2018</a></li>
<li><a href="/cgspace-notes/2018-10/">October, 2018</a></li>
@ -351,8 +388,6 @@
<li><a href="/cgspace-notes/2018-08/">August, 2018</a></li>
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
</ol>
</section>