Add notes for 2016-12-28

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Alan Orth 2016-12-28 12:35:40 +02:00
parent 4684bf3290
commit 8d266b4f50
Signed by: alanorth
GPG Key ID: 0FB860CC9C45B1B9
28 changed files with 299 additions and 36 deletions

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@ -684,3 +684,16 @@ $ exit
``` ```
$ [dspace]/bin/dspace metadata-export -a -f /tmp/iita.csv -i 10568/68616 $ [dspace]/bin/dspace metadata-export -a -f /tmp/iita.csv -i 10568/68616
``` ```
## 2016-12-28
- We've been getting two alerts per day about CPU usage on the new server from Linode
- These are caused by the batch jobs for Solr etc that run in the early morning hours
- The Linode default is to alert at 90% CPU usage for two hours, but I see the old server was at 150%, so maybe we just need to adjust it
- Speaking of the old server (linode01), I think we can decommission it now
- I checked the S3 logs on the new server (linode18) to make sure the backups have been running and everything looks good
- In other news, I was looking at the Munin graphs for PostgreSQL on the new server and it looks slightly worrying:
![munin postgres stats](2016/12/postgres_size_ALL-week.png)
- I will have to check later why the size keeps increasing

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@ -90,7 +90,7 @@ $ psql -c 'SELECT * from pg_stat_activity;' | grep idle | grep -c cgspac
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<base href="https://alanorth.github.io/cgspace-notes/"> <base href="https://alanorth.github.io/cgspace-notes/">
@ -119,6 +119,14 @@ $ psql -c &#39;SELECT * from pg_stat_activity;&#39; | grep idle | grep -c cgspac
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@ -93,7 +93,7 @@ Replace lzop with xz in log compression cron jobs on DSpace Test—it uses less
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@ -122,6 +122,14 @@ Replace lzop with xz in log compression cron jobs on DSpace Test—it uses less
<a class="nav-link " href="https://alanorth.github.io/cgspace-notes/">Home</a> <a class="nav-link " href="https://alanorth.github.io/cgspace-notes/">Home</a>
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@ -78,7 +78,7 @@ Update GitHub wiki for documentation of maintenance tasks.
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@ -107,6 +107,14 @@ Update GitHub wiki for documentation of maintenance tasks.
<a class="nav-link " href="https://alanorth.github.io/cgspace-notes/">Home</a> <a class="nav-link " href="https://alanorth.github.io/cgspace-notes/">Home</a>
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@ -99,7 +99,7 @@ Also, lots of things like &ldquo;COTE D`LVOIRE&rdquo; and &ldquo;COTE D IVOIRE&r
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@ -128,6 +128,14 @@ Also, lots of things like &ldquo;COTE D`LVOIRE&rdquo; and &ldquo;COTE D IVOIRE&r
<a class="nav-link " href="https://alanorth.github.io/cgspace-notes/">Home</a> <a class="nav-link " href="https://alanorth.github.io/cgspace-notes/">Home</a>
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@ -78,7 +78,7 @@ Reinstall my local (Mac OS X) DSpace stack with Tomcat 7, PostgreSQL 9.3, and Ja
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@ -107,6 +107,14 @@ Reinstall my local (Mac OS X) DSpace stack with Tomcat 7, PostgreSQL 9.3, and Ja
<a class="nav-link " href="https://alanorth.github.io/cgspace-notes/">Home</a> <a class="nav-link " href="https://alanorth.github.io/cgspace-notes/">Home</a>
<a class="nav-link" href="https://alanorth.github.io/cgspace-notes/">CGSpace Notes</a>
<a class="nav-link" href="https://alanorth.github.io/cgspace-notes/tags/notes/">Notes</a>
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@ -84,7 +84,7 @@ Also, I noticed the checker log has some errors we should pay attention to:
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@ -113,6 +113,14 @@ Also, I noticed the checker log has some errors we should pay attention to:
<a class="nav-link " href="https://alanorth.github.io/cgspace-notes/">Home</a> <a class="nav-link " href="https://alanorth.github.io/cgspace-notes/">Home</a>
<a class="nav-link" href="https://alanorth.github.io/cgspace-notes/">CGSpace Notes</a>
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@ -90,7 +90,7 @@ There are 3,000 IPs accessing the REST API in a 24-hour period!
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<base href="https://alanorth.github.io/cgspace-notes/"> <base href="https://alanorth.github.io/cgspace-notes/">
@ -119,6 +119,14 @@ There are 3,000 IPs accessing the REST API in a 24-hour period!
<a class="nav-link " href="https://alanorth.github.io/cgspace-notes/">Home</a> <a class="nav-link " href="https://alanorth.github.io/cgspace-notes/">Home</a>
<a class="nav-link" href="https://alanorth.github.io/cgspace-notes/">CGSpace Notes</a>
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@ -87,7 +87,7 @@ Working on second phase of metadata migration, looks like this will work for mov
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@ -116,6 +116,14 @@ Working on second phase of metadata migration, looks like this will work for mov
<a class="nav-link " href="https://alanorth.github.io/cgspace-notes/">Home</a> <a class="nav-link " href="https://alanorth.github.io/cgspace-notes/">Home</a>
<a class="nav-link" href="https://alanorth.github.io/cgspace-notes/">CGSpace Notes</a>
<a class="nav-link" href="https://alanorth.github.io/cgspace-notes/tags/notes/">Notes</a>
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@ -111,7 +111,7 @@ In this case the select query was showing 95 results before the update
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<base href="https://alanorth.github.io/cgspace-notes/"> <base href="https://alanorth.github.io/cgspace-notes/">
@ -140,6 +140,14 @@ In this case the select query was showing 95 results before the update
<a class="nav-link " href="https://alanorth.github.io/cgspace-notes/">Home</a> <a class="nav-link " href="https://alanorth.github.io/cgspace-notes/">Home</a>
<a class="nav-link" href="https://alanorth.github.io/cgspace-notes/">CGSpace Notes</a>
<a class="nav-link" href="https://alanorth.github.io/cgspace-notes/tags/notes/">Notes</a>
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@ -102,7 +102,7 @@ $ git rebase -i dspace-5.5
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<base href="https://alanorth.github.io/cgspace-notes/"> <base href="https://alanorth.github.io/cgspace-notes/">
@ -131,6 +131,14 @@ $ git rebase -i dspace-5.5
<a class="nav-link " href="https://alanorth.github.io/cgspace-notes/">Home</a> <a class="nav-link " href="https://alanorth.github.io/cgspace-notes/">Home</a>
<a class="nav-link" href="https://alanorth.github.io/cgspace-notes/">CGSpace Notes</a>
<a class="nav-link" href="https://alanorth.github.io/cgspace-notes/tags/notes/">Notes</a>
<a class="nav-link" href="https://alanorth.github.io/cgspace-notes/post/">Posts</a>
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@ -90,7 +90,7 @@ $ ldapsearch -x -H ldaps://svcgroot2.cgiarad.org:3269/ -b &quot;dc=cgiarad,dc=or
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<base href="https://alanorth.github.io/cgspace-notes/"> <base href="https://alanorth.github.io/cgspace-notes/">
@ -119,6 +119,14 @@ $ ldapsearch -x -H ldaps://svcgroot2.cgiarad.org:3269/ -b &quot;dc=cgiarad,dc=or
<a class="nav-link " href="https://alanorth.github.io/cgspace-notes/">Home</a> <a class="nav-link " href="https://alanorth.github.io/cgspace-notes/">Home</a>
<a class="nav-link" href="https://alanorth.github.io/cgspace-notes/">CGSpace Notes</a>
<a class="nav-link" href="https://alanorth.github.io/cgspace-notes/tags/notes/">Notes</a>
<a class="nav-link" href="https://alanorth.github.io/cgspace-notes/post/">Posts</a>
<a class="nav-link" href="https://alanorth.github.io/cgspace-notes/tags/">Tags</a>
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@ -54,7 +54,7 @@
<meta name="generator" content="Hugo 0.17" /> <meta name="generator" content="Hugo 0.18" />
<base href="https://alanorth.github.io/cgspace-notes/"> <base href="https://alanorth.github.io/cgspace-notes/">
@ -83,6 +83,14 @@
<a class="nav-link " href="https://alanorth.github.io/cgspace-notes/">Home</a> <a class="nav-link " href="https://alanorth.github.io/cgspace-notes/">Home</a>
<a class="nav-link" href="https://alanorth.github.io/cgspace-notes/">CGSpace Notes</a>
<a class="nav-link" href="https://alanorth.github.io/cgspace-notes/tags/notes/">Notes</a>
<a class="nav-link" href="https://alanorth.github.io/cgspace-notes/post/">Posts</a>
<a class="nav-link" href="https://alanorth.github.io/cgspace-notes/tags/">Tags</a>
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@ -54,7 +54,7 @@
<meta name="generator" content="Hugo 0.17" /> <meta name="generator" content="Hugo 0.18" />
<base href="https://alanorth.github.io/cgspace-notes/"> <base href="https://alanorth.github.io/cgspace-notes/">
@ -83,6 +83,14 @@
<a class="nav-link " href="https://alanorth.github.io/cgspace-notes/">Home</a> <a class="nav-link " href="https://alanorth.github.io/cgspace-notes/">Home</a>
<a class="nav-link" href="https://alanorth.github.io/cgspace-notes/">CGSpace Notes</a>
<a class="nav-link" href="https://alanorth.github.io/cgspace-notes/tags/notes/">Notes</a>
<a class="nav-link" href="https://alanorth.github.io/cgspace-notes/post/">Posts</a>
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@ -30,7 +30,7 @@
<meta itemprop="dateModified" content="2016-12-02T10:43:00&#43;03:00" /> <meta itemprop="dateModified" content="2016-12-02T10:43:00&#43;03:00" />
<meta itemprop="wordCount" content="3947"> <meta itemprop="wordCount" content="4078">
@ -54,7 +54,7 @@
<meta name="generator" content="Hugo 0.17" /> <meta name="generator" content="Hugo 0.18" />
<base href="https://alanorth.github.io/cgspace-notes/"> <base href="https://alanorth.github.io/cgspace-notes/">
@ -83,6 +83,14 @@
<a class="nav-link " href="https://alanorth.github.io/cgspace-notes/">Home</a> <a class="nav-link " href="https://alanorth.github.io/cgspace-notes/">Home</a>
<a class="nav-link" href="https://alanorth.github.io/cgspace-notes/">CGSpace Notes</a>
<a class="nav-link" href="https://alanorth.github.io/cgspace-notes/tags/notes/">Notes</a>
<a class="nav-link" href="https://alanorth.github.io/cgspace-notes/post/">Posts</a>
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@ -851,6 +859,23 @@ $ exit
<pre><code>$ [dspace]/bin/dspace metadata-export -a -f /tmp/iita.csv -i 10568/68616 <pre><code>$ [dspace]/bin/dspace metadata-export -a -f /tmp/iita.csv -i 10568/68616
</code></pre> </code></pre>
<h2 id="2016-12-28">2016-12-28</h2>
<ul>
<li>We&rsquo;ve been getting two alerts per day about CPU usage on the new server from Linode</li>
<li>These are caused by the batch jobs for Solr etc that run in the early morning hours</li>
<li>The Linode default is to alert at 90% CPU usage for two hours, but I see the old server was at 150%, so maybe we just need to adjust it</li>
<li>Speaking of the old server (linode01), I think we can decommission it now</li>
<li>I checked the S3 logs on the new server (linode18) to make sure the backups have been running and everything looks good</li>
<li>In other news, I was looking at the Munin graphs for PostgreSQL on the new server and it looks slightly worrying:</li>
</ul>
<p><img src="2016/12/postgres_size_ALL-week.png" alt="munin postgres stats" /></p>
<ul>
<li>I will have to check later why the size keeps increasing</li>
</ul>

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@ -36,7 +36,7 @@
<meta name="generator" content="Hugo 0.17" /> <meta name="generator" content="Hugo 0.18" />
<base href="https://alanorth.github.io/cgspace-notes/"> <base href="https://alanorth.github.io/cgspace-notes/">
@ -69,6 +69,14 @@
<a class="nav-link active" href="https://alanorth.github.io/cgspace-notes/">Home</a> <a class="nav-link active" href="https://alanorth.github.io/cgspace-notes/">Home</a>
<a class="nav-link" href="https://alanorth.github.io/cgspace-notes/">CGSpace Notes</a>
<a class="nav-link" href="https://alanorth.github.io/cgspace-notes/tags/notes/">Notes</a>
<a class="nav-link" href="https://alanorth.github.io/cgspace-notes/post/">Posts</a>
<a class="nav-link" href="https://alanorth.github.io/cgspace-notes/tags/">Tags</a>
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@ -344,7 +352,7 @@ dspacetest=# select text_value from metadatavalue where metadata_field_id=3 and
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@ -754,6 +754,23 @@ $ exit
&lt;pre&gt;&lt;code&gt;$ [dspace]/bin/dspace metadata-export -a -f /tmp/iita.csv -i 10568/68616 &lt;pre&gt;&lt;code&gt;$ [dspace]/bin/dspace metadata-export -a -f /tmp/iita.csv -i 10568/68616
&lt;/code&gt;&lt;/pre&gt; &lt;/code&gt;&lt;/pre&gt;
&lt;h2 id=&#34;2016-12-28&#34;&gt;2016-12-28&lt;/h2&gt;
&lt;ul&gt;
&lt;li&gt;We&amp;rsquo;ve been getting two alerts per day about CPU usage on the new server from Linode&lt;/li&gt;
&lt;li&gt;These are caused by the batch jobs for Solr etc that run in the early morning hours&lt;/li&gt;
&lt;li&gt;The Linode default is to alert at 90% CPU usage for two hours, but I see the old server was at 150%, so maybe we just need to adjust it&lt;/li&gt;
&lt;li&gt;Speaking of the old server (linode01), I think we can decommission it now&lt;/li&gt;
&lt;li&gt;I checked the S3 logs on the new server (linode18) to make sure the backups have been running and everything looks good&lt;/li&gt;
&lt;li&gt;In other news, I was looking at the Munin graphs for PostgreSQL on the new server and it looks slightly worrying:&lt;/li&gt;
&lt;/ul&gt;
&lt;p&gt;&lt;img src=&#34;2016/12/postgres_size_ALL-week.png&#34; alt=&#34;munin postgres stats&#34; /&gt;&lt;/p&gt;
&lt;ul&gt;
&lt;li&gt;I will have to check later why the size keeps increasing&lt;/li&gt;
&lt;/ul&gt;
</description> </description>
</item> </item>

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@ -36,7 +36,7 @@
<meta name="generator" content="Hugo 0.17" /> <meta name="generator" content="Hugo 0.18" />
<base href="https://alanorth.github.io/cgspace-notes/"> <base href="https://alanorth.github.io/cgspace-notes/">
@ -69,6 +69,14 @@
<a class="nav-link active" href="https://alanorth.github.io/cgspace-notes/">Home</a> <a class="nav-link active" href="https://alanorth.github.io/cgspace-notes/">Home</a>
<a class="nav-link" href="https://alanorth.github.io/cgspace-notes/">CGSpace Notes</a>
<a class="nav-link" href="https://alanorth.github.io/cgspace-notes/tags/notes/">Notes</a>
<a class="nav-link" href="https://alanorth.github.io/cgspace-notes/post/">Posts</a>
<a class="nav-link" href="https://alanorth.github.io/cgspace-notes/tags/">Tags</a>
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@ -206,7 +214,7 @@
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<a class="btn btn-outline-primary" href="/" role="button">Previous page</a> <a class="btn btn-outline-primary" href="/cgspace-notes/" role="button">Previous page</a>
<a class="btn btn-outline-primary disabled" href="#" role="button" aria-disabled="true">Next page</a> <a class="btn btn-outline-primary disabled" href="#" role="button" aria-disabled="true">Next page</a>

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@ -36,7 +36,7 @@
<meta name="generator" content="Hugo 0.17" /> <meta name="generator" content="Hugo 0.18" />
<base href="https://alanorth.github.io/cgspace-notes/"> <base href="https://alanorth.github.io/cgspace-notes/">
@ -69,6 +69,14 @@
<a class="nav-link " href="https://alanorth.github.io/cgspace-notes/">Home</a> <a class="nav-link " href="https://alanorth.github.io/cgspace-notes/">Home</a>
<a class="nav-link" href="https://alanorth.github.io/cgspace-notes/">CGSpace Notes</a>
<a class="nav-link" href="https://alanorth.github.io/cgspace-notes/tags/notes/">Notes</a>
<a class="nav-link" href="https://alanorth.github.io/cgspace-notes/post/">Posts</a>
<a class="nav-link" href="https://alanorth.github.io/cgspace-notes/tags/">Tags</a>
</nav> </nav>
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@ -344,7 +352,7 @@ dspacetest=# select text_value from metadatavalue where metadata_field_id=3 and
<a class="btn btn-outline-primary disabled" href="#" role="button" aria-disabled="true">Previous page</a> <a class="btn btn-outline-primary disabled" href="#" role="button" aria-disabled="true">Previous page</a>
<a class="btn btn-outline-primary" href="/post/page/2/" role="button">Next page</a> <a class="btn btn-outline-primary" href="/cgspace-notes/post/page/2/" role="button">Next page</a>
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@ -1,9 +1,9 @@
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<description>Recent content in Post-rsses on CGSpace Notes</description> <description>Recent content in Posts on CGSpace Notes</description>
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<lastBuildDate>Fri, 02 Dec 2016 10:43:00 +0300</lastBuildDate> <lastBuildDate>Fri, 02 Dec 2016 10:43:00 +0300</lastBuildDate>
@ -754,6 +754,23 @@ $ exit
&lt;pre&gt;&lt;code&gt;$ [dspace]/bin/dspace metadata-export -a -f /tmp/iita.csv -i 10568/68616 &lt;pre&gt;&lt;code&gt;$ [dspace]/bin/dspace metadata-export -a -f /tmp/iita.csv -i 10568/68616
&lt;/code&gt;&lt;/pre&gt; &lt;/code&gt;&lt;/pre&gt;
&lt;h2 id=&#34;2016-12-28&#34;&gt;2016-12-28&lt;/h2&gt;
&lt;ul&gt;
&lt;li&gt;We&amp;rsquo;ve been getting two alerts per day about CPU usage on the new server from Linode&lt;/li&gt;
&lt;li&gt;These are caused by the batch jobs for Solr etc that run in the early morning hours&lt;/li&gt;
&lt;li&gt;The Linode default is to alert at 90% CPU usage for two hours, but I see the old server was at 150%, so maybe we just need to adjust it&lt;/li&gt;
&lt;li&gt;Speaking of the old server (linode01), I think we can decommission it now&lt;/li&gt;
&lt;li&gt;I checked the S3 logs on the new server (linode18) to make sure the backups have been running and everything looks good&lt;/li&gt;
&lt;li&gt;In other news, I was looking at the Munin graphs for PostgreSQL on the new server and it looks slightly worrying:&lt;/li&gt;
&lt;/ul&gt;
&lt;p&gt;&lt;img src=&#34;2016/12/postgres_size_ALL-week.png&#34; alt=&#34;munin postgres stats&#34; /&gt;&lt;/p&gt;
&lt;ul&gt;
&lt;li&gt;I will have to check later why the size keeps increasing&lt;/li&gt;
&lt;/ul&gt;
</description> </description>
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@ -36,7 +36,7 @@
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@ -15,3 +15,7 @@ Disallow: /cgspace-notes/2016-02/
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Disallow: /cgspace-notes/2015-12/ Disallow: /cgspace-notes/2015-12/
Disallow: /cgspace-notes/2015-11/ Disallow: /cgspace-notes/2015-11/
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<a class="nav-link" href="https://alanorth.github.io/cgspace-notes/">CGSpace Notes</a>
<a class="nav-link" href="https://alanorth.github.io/cgspace-notes/tags/notes/">Notes</a>
<a class="nav-link" href="https://alanorth.github.io/cgspace-notes/post/">Posts</a>
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@ -344,7 +352,7 @@ dspacetest=# select text_value from metadatavalue where metadata_field_id=3 and
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@ -753,6 +753,23 @@ $ exit
&lt;pre&gt;&lt;code&gt;$ [dspace]/bin/dspace metadata-export -a -f /tmp/iita.csv -i 10568/68616 &lt;pre&gt;&lt;code&gt;$ [dspace]/bin/dspace metadata-export -a -f /tmp/iita.csv -i 10568/68616
&lt;/code&gt;&lt;/pre&gt; &lt;/code&gt;&lt;/pre&gt;
&lt;h2 id=&#34;2016-12-28&#34;&gt;2016-12-28&lt;/h2&gt;
&lt;ul&gt;
&lt;li&gt;We&amp;rsquo;ve been getting two alerts per day about CPU usage on the new server from Linode&lt;/li&gt;
&lt;li&gt;These are caused by the batch jobs for Solr etc that run in the early morning hours&lt;/li&gt;
&lt;li&gt;The Linode default is to alert at 90% CPU usage for two hours, but I see the old server was at 150%, so maybe we just need to adjust it&lt;/li&gt;
&lt;li&gt;Speaking of the old server (linode01), I think we can decommission it now&lt;/li&gt;
&lt;li&gt;I checked the S3 logs on the new server (linode18) to make sure the backups have been running and everything looks good&lt;/li&gt;
&lt;li&gt;In other news, I was looking at the Munin graphs for PostgreSQL on the new server and it looks slightly worrying:&lt;/li&gt;
&lt;/ul&gt;
&lt;p&gt;&lt;img src=&#34;2016/12/postgres_size_ALL-week.png&#34; alt=&#34;munin postgres stats&#34; /&gt;&lt;/p&gt;
&lt;ul&gt;
&lt;li&gt;I will have to check later why the size keeps increasing&lt;/li&gt;
&lt;/ul&gt;
</description> </description>
</item> </item>

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<a class="nav-link" href="https://alanorth.github.io/cgspace-notes/">CGSpace Notes</a>
<a class="nav-link" href="https://alanorth.github.io/cgspace-notes/tags/notes/">Notes</a>
<a class="nav-link" href="https://alanorth.github.io/cgspace-notes/post/">Posts</a>
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