Add notes for 2020-11-30

content/posts/2020-11.md

@@ -502,4 +502,38 @@ facet=true&f.owningComm.facet.limit=5&f.owningComm.facet.offset=5&f.countryCode.
 - Peter told me that he can't find the [CGIAR Research Program on Livestock](https://cgspace.cgiar.org/handle/10568/80099) community in the community filters on AReS
   - I looked briefly and couldn't find it either so I filed an issue on OpenRXV: https://github.com/ilri/OpenRXV/issues/62
 
+## 2020-11-30
+
+- Ben Hack asked for the ILRI subject we are using on CGSpace
+  - I linked him the input-forms.xml file and also sent him a list of 112 terms extracted with `xml` from the xmlstarlet package:
+
+```
+$ xml sel -t -m '//value-pairs[@value-pairs-name="ilrisubject"]/pair/displayed-value/text()' -c '.' -n dspace/config/input-forms.xml
+```
+
+- IWMI sent me a few new ORCID identifiers so I combined them with our existing ones as well as another ILRI one that Tezira asked me to update, filtered the unique ones, and then resolved their names using my `resolve-orcids.py` script:
+
+```
+$ cat ~/src/git/DSpace/dspace/config/controlled-vocabularies/cg-creator-id.xml /tmp/iwmi-orcids.txt /tmp/hung.txt | grep -oE '[A-Z0-9]{4}-[A-Z0-9]{4}-[A-Z0-9]{4}-[A-Z0-9]{4}' | sort | uniq > /tmp/2020-11-30-combined-orcids.txt
+$ ./resolve-orcids.py -i /tmp/2020-11-30-combined-orcids.txt -o /tmp/2020-11-30-combined-orcids-names.txt -d
+# sort names, copy to cg-creator-id.xml, add XML formatting, and then format with tidy (preserving accents)
+$ tidy -xml -utf8 -iq -m -w 0 dspace/config/controlled-vocabularies/cg-creator-id.xml
+```
+
+- I used my `fix-metadata-values.py` script to update the old occurences of Hung's ORCID and some others that I see have changed:
+
+```
+$ cat 2020-11-30-fix-hung-orcid.csv
+cg.creator.id,correct
+"Hung Nguyen-Viet: 0000-0001-9877-0596","Hung Nguyen-Viet: 0000-0003-1549-2733"
+"Adriana Tofiño: 0000-0001-7115-7169","Adriana Tofiño Rivera: 0000-0001-7115-7169"
+"Cristhian Puerta Rodriguez: 0000-0001-5992-1697","David Puerta: 0000-0001-5992-1697"
+"Ermias Betemariam: 0000-0002-1955-6995","Ermias Aynekulu: 0000-0002-1955-6995"
+"Hirut Betaw: 0000-0002-1205-3711","Betaw Hirut: 0000-0002-1205-3711"
+"Megan Zandstra: 0000-0002-3326-6492","Megan McNeil Zandstra: 0000-0002-3326-6492"
+"Tolu Eyinla: 0000-0003-1442-4392","Toluwalope Emmanuel: 0000-0003-1442-4392"
+"VInay Nangia: 0000-0001-5148-8614","Vinay Nangia: 0000-0001-5148-8614"
+$ ./fix-metadata-values.py -i 2020-11-30-fix-hung-orcid.csv -db dspace63 -u dspacetest -p 'dom@in34sniper' -f cg.creator.id -t 'correct' -m 240
+```
+
 <!-- vim: set sw=2 ts=2: -->

docs/2016-06/index.html

@@ -18,7 +18,7 @@ Working on second phase of metadata migration, looks like this will work for mov
 <meta property="og:type" content="article" />
 <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/2016-06/" />
 <meta property="article:published_time" content="2016-06-01T10:53:00+03:00" />
-<meta property="article:modified_time" content="2020-04-13T15:30:24+03:00" />
+<meta property="article:modified_time" content="2020-11-30T12:10:20+02:00" />
 
 <meta name="twitter:card" content="summary"/>
 <meta name="twitter:title" content="June, 2016"/>
@@ -41,9 +41,9 @@ Working on second phase of metadata migration, looks like this will work for mov
   "@type": "BlogPosting",
   "headline": "June, 2016",
   "url": "https://alanorth.github.io/cgspace-notes/2016-06/",
-  "wordCount": "1549",
+  "wordCount": "1551",
   "datePublished": "2016-06-01T10:53:00+03:00",
-  "dateModified": "2020-04-13T15:30:24+03:00",
+  "dateModified": "2020-11-30T12:10:20+02:00",
   "author": {
     "@type": "Person",
     "name": "Alan Orth"
@@ -239,7 +239,7 @@ UPDATE 960
 <ul>
 <li>Discuss controlled vocabularies for ~28 fields</li>
 <li>Looks like this is all we need: <a href="https://wiki.lyrasis.org/display/DSDOC5x/Submission+User+Interface#SubmissionUserInterface-ConfiguringControlledVocabularies">https://wiki.lyrasis.org/display/DSDOC5x/Submission+User+Interface#SubmissionUserInterface-ConfiguringControlledVocabularies</a></li>
-<li>I wrote an XPath expression to extract the ILRI subjects from <code>input-forms.xml</code> (uses xmlstartlet):</li>
+<li>I wrote an XPath expression to extract the ILRI subjects from <code>input-forms.xml</code> (from the xmlstarlet package):</li>
 </ul>
 <pre><code>$ xml sel -t -m '//value-pairs[@value-pairs-name=&quot;ilrisubject&quot;]/pair/displayed-value/text()' -c '.' -n dspace/config/input-forms.xml
 </code></pre><ul>

docs/2020-11/index.html

@@ -17,7 +17,7 @@ So far we’ve spent at least fifty hours to process the statistics and stat
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 <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/2020-11/" />
 <meta property="article:published_time" content="2020-11-01T13:11:54+02:00" />
-<meta property="article:modified_time" content="2020-11-29T08:40:58+02:00" />
+<meta property="article:modified_time" content="2020-11-29T14:50:02+02:00" />
 
 <meta name="twitter:card" content="summary"/>
 <meta name="twitter:title" content="November, 2020"/>
@@ -39,9 +39,9 @@ So far we&rsquo;ve spent at least fifty hours to process the statistics and stat
   "@type": "BlogPosting",
   "headline": "November, 2020",
   "url": "https://alanorth.github.io/cgspace-notes/2020-11/",
-  "wordCount": "3438",
+  "wordCount": "3655",
   "datePublished": "2020-11-01T13:11:54+02:00",
-  "dateModified": "2020-11-29T08:40:58+02:00",
+  "dateModified": "2020-11-29T14:50:02+02:00",
   "author": {
     "@type": "Person",
     "name": "Alan Orth"
@@ -677,7 +677,37 @@ COPY 87411
 </ul>
 </li>
 </ul>
-<!-- raw HTML omitted -->
+<h2 id="2020-11-30">2020-11-30</h2>
+<ul>
+<li>Ben Hack asked for the ILRI subject we are using on CGSpace
+<ul>
+<li>I linked him the input-forms.xml file and also sent him a list of 112 terms extracted with <code>xml</code> from the xmlstarlet package:</li>
+</ul>
+</li>
+</ul>
+<pre><code>$ xml sel -t -m '//value-pairs[@value-pairs-name=&quot;ilrisubject&quot;]/pair/displayed-value/text()' -c '.' -n dspace/config/input-forms.xml
+</code></pre><ul>
+<li>IWMI sent me a few new ORCID identifiers so I combined them with our existing ones as well as another ILRI one that Tezira asked me to update, filtered the unique ones, and then resolved their names using my <code>resolve-orcids.py</code> script:</li>
+</ul>
+<pre><code>$ cat ~/src/git/DSpace/dspace/config/controlled-vocabularies/cg-creator-id.xml /tmp/iwmi-orcids.txt /tmp/hung.txt | grep -oE '[A-Z0-9]{4}-[A-Z0-9]{4}-[A-Z0-9]{4}-[A-Z0-9]{4}' | sort | uniq &gt; /tmp/2020-11-30-combined-orcids.txt
+$ ./resolve-orcids.py -i /tmp/2020-11-30-combined-orcids.txt -o /tmp/2020-11-30-combined-orcids-names.txt -d
+# sort names, copy to cg-creator-id.xml, add XML formatting, and then format with tidy (preserving accents)
+$ tidy -xml -utf8 -iq -m -w 0 dspace/config/controlled-vocabularies/cg-creator-id.xml
+</code></pre><ul>
+<li>I used my <code>fix-metadata-values.py</code> script to update the old occurences of Hung&rsquo;s ORCID and some others that I see have changed:</li>
+</ul>
+<pre><code>$ cat 2020-11-30-fix-hung-orcid.csv
+cg.creator.id,correct
+&quot;Hung Nguyen-Viet: 0000-0001-9877-0596&quot;,&quot;Hung Nguyen-Viet: 0000-0003-1549-2733&quot;
+&quot;Adriana Tofiño: 0000-0001-7115-7169&quot;,&quot;Adriana Tofiño Rivera: 0000-0001-7115-7169&quot;
+&quot;Cristhian Puerta Rodriguez: 0000-0001-5992-1697&quot;,&quot;David Puerta: 0000-0001-5992-1697&quot;
+&quot;Ermias Betemariam: 0000-0002-1955-6995&quot;,&quot;Ermias Aynekulu: 0000-0002-1955-6995&quot;
+&quot;Hirut Betaw: 0000-0002-1205-3711&quot;,&quot;Betaw Hirut: 0000-0002-1205-3711&quot;
+&quot;Megan Zandstra: 0000-0002-3326-6492&quot;,&quot;Megan McNeil Zandstra: 0000-0002-3326-6492&quot;
+&quot;Tolu Eyinla: 0000-0003-1442-4392&quot;,&quot;Toluwalope Emmanuel: 0000-0003-1442-4392&quot;
+&quot;VInay Nangia: 0000-0001-5148-8614&quot;,&quot;Vinay Nangia: 0000-0001-5148-8614&quot;
+$ ./fix-metadata-values.py -i 2020-11-30-fix-hung-orcid.csv -db dspace63 -u dspacetest -p 'dom@in34sniper' -f cg.creator.id -t 'correct' -m 240
+</code></pre><!-- raw HTML omitted -->
 
   
 

docs/categories/index.html

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docs/posts/index.html

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docs/sitemap.xml

@@ -4,7 +4,7 @@
   
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docs/tags/index.html

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docs/tags/notes/index.html

@@ -9,7 +9,7 @@
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docs/tags/notes/page/2/index.html

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docs/tags/notes/page/3/index.html

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