Add notes for 2022-11-30

content/posts/2022-11.md

@@ -502,5 +502,28 @@ $ sort -k4,1 /tmp/duplicates.txt    | \
 
 - This worked very well, but there were some metadata values that were tripled or quadrupled, so it only deleted the first duplicate
   - I just ran it again two more times to find the last duplicates, now we have none!
+- I also generated another SQL file with commands to update the last modified timestamps of these items:
+
+```console
+$ awk -F'\t' '{print $4}' /tmp/duplicates.txt | sort -u | sed "s/^\(.*\)$/UPDATE item SET last_modified=NOW() WHERE uuid='\1';/" > /tmp/update-timestamp.sql
+```
+
+- Tezira said she was having trouble archiving submissions
+  - In the afternoon I looked and found a high number of locks:
+
+```console
+$ psql -c 'SELECT * FROM pg_locks pl LEFT JOIN pg_stat_activity psa ON pl.pid = psa.pid;' | grep -o -E '(dspaceWeb|dspaceApi|dspaceCli)' | sort | uniq -c | sort -n
+     60 dspaceCli
+    176 dspaceApi
+   1194 dspaceWeb
+```
+
+[!PostgreSQL database locks](/cgspace-notes/2022/11/postgres_locks_cgspace-day.png)
+
+- The timing looks suspiciously close to when I was running the batch updates on the ILRI community this morning.
+  - I restarted Tomcat and PostgreSQL and everything was back to normal
+- I found some items on CGSpace in Dinka, Ndogo, and Bari languages, but the `dcterms.language` field was "other"
+  - That's so unfortunate! These languages are not in ISO 639-1, but they are in ISO 639-3, which uses Alpha 3 and has more space for languages
+  - I changed them from other to use the three-letter codes, and I will suggest to the CG Core group that we use ISO 639-3 in the future
 
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docs/2022-11/index.html

@@ -24,7 +24,7 @@ I reverted the Cocoon autosave change because it was more of a nuissance that Pe
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 <meta property="article:published_time" content="2022-11-01T09:11:36+03:00" />
-<meta property="article:modified_time" content="2022-11-28T23:19:19+03:00" />
+<meta property="article:modified_time" content="2022-11-30T12:35:31+03:00" />
 
 
 
@@ -54,9 +54,9 @@ I reverted the Cocoon autosave change because it was more of a nuissance that Pe
   "@type": "BlogPosting",
   "headline": "November, 2022",
   "url": "https://alanorth.github.io/cgspace-notes/2022-11/",
-  "wordCount": "3206",
+  "wordCount": "3401",
   "datePublished": "2022-11-01T09:11:36+03:00",
-  "dateModified": "2022-11-28T23:19:19+03:00",
+  "dateModified": "2022-11-30T12:35:31+03:00",
   "author": {
     "@type": "Person",
     "name": "Alan Orth"
@@ -707,6 +707,33 @@ I reverted the Cocoon autosave change because it was more of a nuissance that Pe
 <li>I just ran it again two more times to find the last duplicates, now we have none!</li>
 </ul>
 </li>
+<li>I also generated another SQL file with commands to update the last modified timestamps of these items:</li>
+</ul>
+<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;"><code class="language-console" data-lang="console"><span style="display:flex;"><span>$ awk -F<span style="color:#e6db74">&#39;\t&#39;</span> <span style="color:#e6db74">&#39;{print $4}&#39;</span> /tmp/duplicates.txt | sort -u | sed <span style="color:#e6db74">&#34;s/^\(.*\)</span>$<span style="color:#e6db74">/UPDATE item SET last_modified=NOW() WHERE uuid=&#39;\1&#39;;/&#34;</span> &gt; /tmp/update-timestamp.sql
+</span></span></code></pre></div><ul>
+<li>Tezira said she was having trouble archiving submissions
+<ul>
+<li>In the afternoon I looked and found a high number of locks:</li>
+</ul>
+</li>
+</ul>
+<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;"><code class="language-console" data-lang="console"><span style="display:flex;"><span>$ psql -c <span style="color:#e6db74">&#39;SELECT * FROM pg_locks pl LEFT JOIN pg_stat_activity psa ON pl.pid = psa.pid;&#39;</span> | grep -o -E <span style="color:#e6db74">&#39;(dspaceWeb|dspaceApi|dspaceCli)&#39;</span> | sort | uniq -c | sort -n
+</span></span><span style="display:flex;"><span>     60 dspaceCli
+</span></span><span style="display:flex;"><span>    176 dspaceApi
+</span></span><span style="display:flex;"><span>   1194 dspaceWeb
+</span></span></code></pre></div><p><a href="/cgspace-notes/2022/11/postgres_locks_cgspace-day.png">!PostgreSQL database locks</a></p>
+<ul>
+<li>The timing looks suspiciously close to when I was running the batch updates on the ILRI community this morning.
+<ul>
+<li>I restarted Tomcat and PostgreSQL and everything was back to normal</li>
+</ul>
+</li>
+<li>I found some items on CGSpace in Dinka, Ndogo, and Bari languages, but the <code>dcterms.language</code> field was &ldquo;other&rdquo;
+<ul>
+<li>That&rsquo;s so unfortunate! These languages are not in ISO 639-1, but they are in ISO 639-3, which uses Alpha 3 and has more space for languages</li>
+<li>I changed them from other to use the three-letter codes, and I will suggest to the CG Core group that we use ISO 639-3 in the future</li>
+</ul>
+</li>
 </ul>
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